Wall clock time and date at job start Mon Mar 30 2020 07:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.31003 * 120.00275 * 2 1 4 4 C 1.50706 * 119.99543 * 0.02562 * 3 2 1 5 5 N 1.46900 * 109.46958 * 125.00073 * 4 3 2 6 6 C 1.46896 * 111.00195 * 179.97438 * 5 4 3 7 7 C 1.50697 * 109.47382 * 179.97438 * 6 5 4 8 8 C 1.38280 * 119.97205 * 270.02476 * 7 6 5 9 9 C 1.38255 * 120.11174 * 179.97438 * 8 7 6 10 10 C 1.38163 * 120.05063 * 359.76900 * 9 8 7 11 11 C 1.38710 * 119.94702 * 0.48231 * 10 9 8 12 12 O 1.35900 * 120.05544 * 179.76528 * 11 10 9 13 13 C 1.42898 * 117.00172 * 359.72769 * 12 11 10 14 14 C 1.52997 * 109.47319 * 179.97438 * 13 12 11 15 15 C 1.50697 * 109.47466 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99890 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00428 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99563 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00432 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46616 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47104 * 119.99966 * 19 17 15 22 22 H 1.48489 * 109.47200 * 240.00246 * 19 17 15 23 23 C 1.38129 * 119.97079 * 90.00085 * 7 6 5 24 24 H 1.08998 * 109.46560 * 300.00255 * 1 2 3 25 25 H 1.08999 * 109.47108 * 60.00050 * 1 2 3 26 26 H 1.09002 * 109.46857 * 180.02562 * 1 2 3 27 27 H 1.07996 * 119.99838 * 180.02562 * 2 1 3 28 28 H 1.07992 * 120.00128 * 180.02562 * 3 2 1 29 29 H 1.08996 * 109.47105 * 4.99780 * 4 3 2 30 30 H 1.09006 * 109.46860 * 244.99975 * 4 3 2 31 31 H 1.00901 * 111.00271 * 303.95431 * 5 4 3 32 32 H 1.09005 * 109.46944 * 59.99947 * 6 5 4 33 33 H 1.09002 * 109.47398 * 300.00389 * 6 5 4 34 34 H 1.08000 * 119.95034 * 0.02562 * 8 7 6 35 35 H 1.07991 * 119.97457 * 180.02562 * 9 8 7 36 36 H 1.08006 * 120.02763 * 180.24929 * 10 9 8 37 37 H 1.09002 * 109.47259 * 300.00149 * 13 12 11 38 38 H 1.09001 * 109.47074 * 60.00171 * 13 12 11 39 39 H 1.09002 * 109.47153 * 300.00307 * 14 13 12 40 40 H 1.08998 * 109.47533 * 59.99936 * 14 13 12 41 41 H 0.97002 * 119.99731 * 180.02562 * 18 17 15 42 42 H 1.07998 * 120.02418 * 0.02613 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1621 1.1345 0.0000 4 6 1.4085 2.4396 0.0006 5 7 1.8521 3.2606 1.1351 6 6 1.1378 4.5438 1.1675 7 6 1.6179 5.3565 2.3423 8 6 0.9881 5.2381 3.5677 9 6 1.4265 5.9819 4.6475 10 6 2.4983 6.8421 4.5057 11 6 3.1284 6.9665 3.2763 12 8 4.1799 7.8155 3.1331 13 6 4.5799 8.5535 4.2895 14 6 5.7699 9.4482 3.9371 15 6 6.1922 10.2261 5.1568 16 1 5.6648 10.0951 6.0901 17 6 7.2525 11.1042 5.0815 18 7 7.8950 11.2634 3.9451 19 14 7.7755 12.0690 6.5932 20 1 6.8975 11.7119 7.7363 21 1 9.1837 11.7380 6.9289 22 1 7.6614 13.5233 6.3162 23 6 2.6868 6.2186 2.1942 24 1 -0.3632 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 2.0470 -0.9353 -0.0004 28 1 3.2420 1.1345 -0.0004 29 1 0.3404 2.2423 0.0905 30 1 1.6027 2.9716 -0.9308 31 1 1.7424 2.7633 2.0062 32 1 0.0676 4.3615 1.2653 33 1 1.3303 5.0903 0.2442 34 1 0.1530 4.5629 3.6817 35 1 0.9333 5.8874 5.6036 36 1 2.8430 7.4200 5.3506 37 1 3.7494 9.1710 4.6317 38 1 4.8680 7.8613 5.0806 39 1 6.6003 8.8304 3.5952 40 1 5.4823 10.1405 3.1459 41 1 8.6412 11.8809 3.8922 42 1 3.1782 6.3107 1.2369 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599004470.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:04 Heat of formation + Delta-G solvation = -30.405673 kcal Electronic energy + Delta-G solvation = -19678.971721 eV Core-core repulsion = 16623.179463 eV Total energy + Delta-G solvation = -3055.792258 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.07938 -39.01331 -37.77270 -35.54177 -35.18587 -32.59336 -32.11839 -30.59635 -28.74995 -27.14230 -26.47838 -24.54526 -23.52901 -23.24001 -21.57688 -19.53266 -18.97059 -18.12047 -17.37331 -16.94899 -16.91777 -16.82036 -16.42130 -16.00311 -15.51156 -15.01356 -14.69312 -14.35223 -14.34717 -14.30514 -14.05943 -13.77981 -13.36085 -13.08903 -12.91134 -12.73480 -12.62255 -12.56042 -12.46281 -12.41733 -11.86964 -11.66634 -11.59366 -11.55396 -11.36461 -10.63814 -10.00021 -9.80011 -9.35372 -9.08308 -8.27549 -6.41417 0.33997 0.53654 1.28826 1.40426 1.41674 1.55186 2.27012 2.51251 2.77835 3.06738 3.48062 3.83390 3.92480 4.01651 4.16114 4.21810 4.24079 4.25845 4.32194 4.41503 4.49959 4.53392 4.57823 4.68048 4.72663 4.75604 4.82717 4.86335 5.10954 5.11919 5.20113 5.30825 5.44504 5.45430 5.52362 5.60706 5.68149 5.75260 5.83117 5.91035 6.06222 6.09491 6.45970 6.57837 6.73582 7.28725 8.85873 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.034877 B = 0.002476 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.617304 B =11306.557619 C =11758.407381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.155 4.155 3 C -0.172 4.172 4 C 0.085 3.915 5 N -0.694 5.694 6 C 0.107 3.893 7 C -0.046 4.046 8 C -0.152 4.152 9 C -0.077 4.077 10 C -0.223 4.223 11 C 0.105 3.895 12 O -0.343 6.343 13 C 0.085 3.915 14 C 0.027 3.973 15 C -0.545 4.545 16 H 0.071 0.929 17 C -0.001 4.001 18 N -0.931 5.931 19 Si 0.978 3.022 20 H -0.257 1.257 21 H -0.277 1.277 22 H -0.276 1.276 23 C -0.153 4.153 24 H 0.066 0.934 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.117 0.883 28 H 0.104 0.896 29 H 0.054 0.946 30 H 0.075 0.925 31 H 0.346 0.654 32 H 0.063 0.937 33 H 0.079 0.921 34 H 0.152 0.848 35 H 0.152 0.848 36 H 0.126 0.874 37 H 0.060 0.940 38 H 0.059 0.941 39 H -0.003 1.003 40 H -0.002 1.002 41 H 0.267 0.733 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.059 -20.483 -4.152 28.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.174 4.174 3 C -0.190 4.190 4 C -0.043 4.043 5 N -0.326 5.326 6 C -0.022 4.022 7 C -0.047 4.047 8 C -0.171 4.171 9 C -0.095 4.095 10 C -0.242 4.242 11 C 0.059 3.941 12 O -0.258 6.258 13 C 0.011 3.989 14 C -0.010 4.010 15 C -0.583 4.583 16 H 0.089 0.911 17 C -0.199 4.199 18 N -0.570 5.570 19 Si 0.802 3.198 20 H -0.181 1.181 21 H -0.202 1.202 22 H -0.202 1.202 23 C -0.172 4.172 24 H 0.085 0.915 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.135 0.865 28 H 0.122 0.878 29 H 0.072 0.928 30 H 0.093 0.907 31 H 0.165 0.835 32 H 0.081 0.919 33 H 0.097 0.903 34 H 0.169 0.831 35 H 0.170 0.830 36 H 0.144 0.856 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.016 0.984 40 H 0.017 0.983 41 H 0.076 0.924 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -18.273 -20.087 -4.757 27.569 hybrid contribution 0.202 0.603 0.824 1.041 sum -18.071 -19.484 -3.933 26.864 Atomic orbital electron populations 1.20918 0.92444 1.02977 1.02123 1.23074 0.97053 0.97877 0.99391 1.22764 0.99915 0.93883 1.02465 1.21104 0.97144 0.91709 0.94374 1.60370 1.60399 1.04748 1.07109 1.20828 0.96151 0.89575 0.95597 1.19688 0.93859 0.95169 0.95961 1.21219 1.02116 1.01881 0.91841 1.21229 0.94332 0.93828 1.00138 1.21508 1.01010 1.05080 0.96576 1.19534 0.88074 0.91142 0.95315 1.86084 1.46555 1.53864 1.39301 1.22847 0.97477 0.92922 0.85655 1.18975 0.91705 0.93329 0.96976 1.21424 1.16036 1.24199 0.96626 0.91071 1.26079 0.96067 0.97906 0.99848 1.70136 1.22051 1.37326 1.27527 0.85203 0.78247 0.77882 0.78515 1.18076 1.20227 1.20183 1.20410 0.99763 0.99444 0.97614 0.91495 0.91246 0.91209 0.86534 0.87805 0.92789 0.90651 0.83508 0.91882 0.90254 0.83059 0.83025 0.85577 0.92172 0.92303 0.98435 0.98339 0.92431 0.86237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.18 8.65 71.24 0.62 -0.57 16 2 C -0.15 -1.92 10.26 25.65 0.26 -1.65 16 3 C -0.17 -2.61 9.78 25.65 0.25 -2.36 16 4 C 0.08 1.26 5.93 85.56 0.51 1.77 16 5 N -0.69 -12.69 6.48 -521.98 -3.38 -16.07 16 6 C 0.11 1.93 5.81 85.56 0.50 2.43 16 7 C -0.05 -1.10 5.39 -19.88 -0.11 -1.21 16 8 C -0.15 -3.15 9.70 22.28 0.22 -2.93 16 9 C -0.08 -1.81 10.04 22.26 0.22 -1.59 16 10 C -0.22 -6.94 9.04 22.36 0.20 -6.74 16 11 C 0.10 3.83 6.69 22.50 0.15 3.98 16 12 O -0.34 -15.30 10.14 -92.43 -0.94 -16.24 16 13 C 0.09 3.87 4.68 71.98 0.34 4.21 16 14 C 0.03 1.54 5.34 29.85 0.16 1.69 16 15 C -0.55 -31.28 9.11 25.60 0.23 -31.05 16 16 H 0.07 3.81 7.74 -2.91 -0.02 3.79 16 17 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 18 N -0.93 -57.42 13.29 21.45 0.28 -57.13 16 19 Si 0.98 43.97 29.54 68.60 2.03 46.00 16 20 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 21 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 22 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 23 C -0.15 -4.85 9.64 22.37 0.22 -4.64 16 24 H 0.07 0.60 7.66 -2.39 -0.02 0.58 16 25 H 0.07 0.60 7.85 -2.39 -0.02 0.58 16 26 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 27 H 0.12 1.26 8.06 -2.91 -0.02 1.24 16 28 H 0.10 1.79 8.06 -2.91 -0.02 1.77 16 29 H 0.05 0.64 5.79 -2.39 -0.01 0.63 16 30 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 31 H 0.35 5.91 8.72 -89.69 -0.78 5.13 16 32 H 0.06 0.86 8.08 -2.38 -0.02 0.84 16 33 H 0.08 1.49 8.09 -2.39 -0.02 1.47 16 34 H 0.15 2.05 8.06 -2.91 -0.02 2.03 16 35 H 0.15 2.57 8.06 -2.92 -0.02 2.54 16 36 H 0.13 3.91 6.30 -2.91 -0.02 3.89 16 37 H 0.06 2.56 7.67 -2.39 -0.02 2.54 16 38 H 0.06 2.52 7.65 -2.39 -0.02 2.50 16 39 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 40 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 41 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 42 H 0.12 3.86 8.06 -2.91 -0.02 3.84 16 Total: -1.00 -67.82 352.99 2.43 -65.40 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: 0.21 Total: 16.28 kcal Atomic # 6 Polarization: -42.46 SS G_CDS: 4.23 Total: -38.23 kcal Atomic # 7 Polarization: -70.11 SS G_CDS: -3.10 Total: -73.20 kcal Atomic # 8 Polarization: -15.30 SS G_CDS: -0.94 Total: -16.24 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -67.82 2.43 -65.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599004470.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.992 kcal (2) G-P(sol) polarization free energy of solvation -67.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds