Wall clock time and date at job start Mon Mar 30 2020 07:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47073 * 2 1 4 4 H 1.08995 * 109.47485 * 54.99089 * 3 2 1 5 5 C 1.53002 * 109.46892 * 294.99404 * 3 2 1 6 6 C 1.50697 * 109.46897 * 174.99704 * 3 2 1 7 7 C 1.38305 * 119.96687 * 59.97461 * 6 3 2 8 8 C 1.38258 * 120.14390 * 179.97438 * 7 6 3 9 9 C 1.38140 * 120.06876 * 359.76906 * 8 7 6 10 10 C 1.38853 * 119.92677 * 0.50351 * 9 8 7 11 11 N 1.39924 * 120.06657 * 179.74292 * 10 9 8 12 12 C 1.34772 * 119.99871 * 214.81050 * 11 10 9 13 13 O 1.21291 * 120.00370 * 355.37256 * 12 11 10 14 14 C 1.50706 * 120.00080 * 175.37016 * 12 11 10 15 15 H 1.08992 * 109.47167 * 59.99964 * 14 12 11 16 16 C 1.52994 * 109.46793 * 300.00147 * 14 12 11 17 17 C 1.50703 * 109.47234 * 180.02562 * 14 12 11 18 18 H 1.08004 * 119.99729 * 359.97438 * 17 14 12 19 19 C 1.37872 * 120.00140 * 180.02562 * 17 14 12 20 20 N 1.31516 * 120.00002 * 359.97438 * 19 17 14 21 21 Si 1.86798 * 120.00230 * 179.97438 * 19 17 14 22 22 H 1.48503 * 109.47235 * 179.97438 * 21 19 17 23 23 H 1.48505 * 109.47117 * 299.99828 * 21 19 17 24 24 H 1.48498 * 109.47163 * 59.99458 * 21 19 17 25 25 C 1.38095 * 119.96328 * 239.99362 * 6 3 2 26 26 H 1.08998 * 109.47287 * 179.97438 * 1 2 3 27 27 H 1.08989 * 109.47482 * 300.00825 * 1 2 3 28 28 H 1.09004 * 109.46892 * 60.00794 * 1 2 3 29 29 H 1.08995 * 109.47039 * 239.99205 * 2 1 3 30 30 H 1.09005 * 109.46506 * 119.99873 * 2 1 3 31 31 H 1.09000 * 109.47052 * 300.00517 * 5 3 2 32 32 H 1.09001 * 109.46958 * 60.00254 * 5 3 2 33 33 H 1.09001 * 109.47444 * 180.02562 * 5 3 2 34 34 H 1.08003 * 119.92695 * 0.02562 * 7 6 3 35 35 H 1.07998 * 119.96892 * 180.02562 * 8 7 6 36 36 H 1.07999 * 120.03665 * 180.27586 * 9 8 7 37 37 H 0.97001 * 120.00113 * 34.81955 * 11 10 9 38 38 H 1.09002 * 109.47610 * 300.00044 * 16 14 12 39 39 H 1.09000 * 109.47644 * 60.00178 * 16 14 12 40 40 H 1.09003 * 109.47144 * 179.97438 * 16 14 12 41 41 H 0.97001 * 120.00340 * 180.02562 * 20 19 17 42 42 H 1.07990 * 120.03598 * 359.95996 * 25 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8417 5 6 1.6354 2.1264 -1.3074 6 6 3.5419 1.4442 0.1239 7 6 4.3149 0.8156 -0.8353 8 6 5.6932 0.8154 -0.7255 9 6 6.3026 1.4477 0.3408 10 6 5.5291 2.0748 1.3085 11 7 6.1432 2.7115 2.3926 12 6 5.5533 2.6981 3.6043 13 8 4.4520 2.2077 3.7373 14 6 6.2622 3.2923 4.7941 15 1 6.4599 4.3481 4.6093 16 6 7.5851 2.5574 5.0188 17 6 5.3948 3.1499 6.0183 18 1 4.4269 2.6769 5.9422 19 6 5.8364 3.6245 7.2351 20 7 7.0149 4.2010 7.3276 21 14 4.7610 3.4487 8.7523 22 1 5.4596 4.0342 9.9247 23 1 3.4767 4.1616 8.5340 24 1 4.4920 2.0102 9.0044 25 6 4.1448 2.0732 1.1953 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8898 28 1 -0.3633 0.5137 -0.8901 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8901 31 1 2.0700 1.5873 -2.1492 32 1 0.5490 2.1251 -1.3971 33 1 1.9990 3.1540 -1.3077 34 1 3.8410 0.3245 -1.6723 35 1 6.2941 0.3240 -1.4764 36 1 7.3794 1.4511 0.4237 37 1 6.9934 3.1627 2.2721 38 1 7.3875 1.5015 5.2037 39 1 8.2127 2.6600 4.1336 40 1 8.0981 2.9875 5.8791 41 1 7.3258 4.5346 8.1838 42 1 3.5407 2.5642 1.9438 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600197682.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:41:10 Heat of formation + Delta-G solvation = -37.473789 kcal Electronic energy + Delta-G solvation = -21069.308384 eV Core-core repulsion = 18013.209630 eV Total energy + Delta-G solvation = -3056.098754 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.08121 -38.47263 -36.15148 -33.86540 -33.83127 -31.02021 -30.76644 -29.17694 -28.36727 -25.18702 -24.81296 -23.51067 -22.08872 -21.86833 -19.78819 -19.26016 -17.10995 -16.35016 -15.97279 -15.64910 -15.24307 -14.69872 -14.54135 -14.43725 -13.98992 -13.59095 -13.26929 -13.02988 -12.86381 -12.56067 -12.28338 -12.11480 -11.85817 -11.64952 -11.61602 -11.44823 -11.02741 -10.81198 -10.75699 -10.72303 -10.59389 -10.48146 -10.33112 -10.01130 -9.75440 -9.04491 -8.73718 -8.47967 -8.34504 -7.70824 -6.07249 -4.10996 1.55443 1.67474 3.34338 3.36953 3.41944 3.51489 3.74321 4.09181 4.44133 4.70920 4.81074 5.03739 5.14910 5.26276 5.31589 5.36977 5.39536 5.47908 5.50856 5.63847 5.77140 5.83751 5.88466 5.92940 5.97105 6.02028 6.11526 6.25580 6.32609 6.38120 6.55365 6.60866 6.69204 6.76903 6.81080 6.87530 6.97865 7.38112 7.44239 7.69825 7.91177 8.05490 8.31846 8.96921 9.05238 9.54723 11.00391 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.020483 B = 0.004338 C = 0.003727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.653713 B = 6453.776869 C = 7511.177933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.115 4.115 3 C -0.053 4.053 4 H 0.079 0.921 5 C -0.142 4.142 6 C -0.060 4.060 7 C -0.144 4.144 8 C -0.102 4.102 9 C -0.162 4.162 10 C 0.165 3.835 11 N -0.689 5.689 12 C 0.518 3.482 13 O -0.523 6.523 14 C 0.031 3.969 15 H 0.056 0.944 16 C -0.133 4.133 17 C -0.503 4.503 18 H 0.074 0.926 19 C 0.060 3.940 20 N -0.896 5.896 21 Si 0.902 3.098 22 H -0.288 1.288 23 H -0.276 1.276 24 H -0.276 1.276 25 C -0.123 4.123 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.054 0.946 34 H 0.115 0.885 35 H 0.119 0.881 36 H 0.120 0.880 37 H 0.407 0.593 38 H 0.032 0.968 39 H 0.013 0.987 40 H 0.095 0.905 41 H 0.262 0.738 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.277 -4.835 -17.081 18.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.152 4.152 3 C -0.071 4.071 4 H 0.097 0.903 5 C -0.200 4.200 6 C -0.061 4.061 7 C -0.163 4.163 8 C -0.121 4.121 9 C -0.182 4.182 10 C 0.069 3.931 11 N -0.335 5.335 12 C 0.309 3.691 13 O -0.397 6.397 14 C 0.010 3.990 15 H 0.073 0.927 16 C -0.191 4.191 17 C -0.542 4.542 18 H 0.092 0.908 19 C -0.141 4.141 20 N -0.535 5.535 21 Si 0.730 3.270 22 H -0.213 1.213 23 H -0.201 1.201 24 H -0.202 1.202 25 C -0.143 4.143 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.133 0.867 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.242 0.758 38 H 0.051 0.949 39 H 0.032 0.968 40 H 0.114 0.886 41 H 0.072 0.928 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -4.944 -5.078 -16.728 18.167 hybrid contribution 0.130 0.113 0.790 0.808 sum -4.814 -4.966 -15.938 17.374 Atomic orbital electron populations 1.21833 0.95909 1.01433 1.01899 1.21563 0.95568 0.95814 1.02260 1.20164 0.91164 0.96764 0.99019 0.90300 1.21875 1.00977 1.00522 0.96581 1.19705 0.95066 0.97202 0.94130 1.20801 0.93530 1.02389 0.99611 1.20807 0.94593 0.99111 0.97542 1.20894 0.99507 1.01156 0.96691 1.17944 0.92258 0.94568 0.88331 1.44106 1.25591 1.55510 1.08247 1.22284 0.86123 0.77282 0.83375 1.90530 1.20313 1.44268 1.84617 1.18901 0.94062 0.96391 0.89611 0.92680 1.21761 0.96934 0.99356 1.01092 1.21073 1.03346 1.38482 0.91285 0.90768 1.24940 0.95260 0.94899 0.99030 1.69856 1.18442 1.39727 1.25513 0.86487 0.80414 0.78537 0.81600 1.21324 1.20149 1.20167 1.21287 0.93622 1.01343 0.98040 0.92926 0.92599 0.92612 0.92004 0.91692 0.92636 0.92353 0.92647 0.86693 0.86320 0.86155 0.75784 0.94890 0.96842 0.88635 0.92819 0.84289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.67 37.16 0.36 -1.09 16 2 C -0.11 -1.27 5.14 -26.73 -0.14 -1.40 16 3 C -0.05 -0.64 2.56 -91.77 -0.23 -0.88 16 4 H 0.08 1.05 7.87 -51.93 -0.41 0.65 16 5 C -0.14 -1.43 8.76 37.16 0.33 -1.11 16 6 C -0.06 -0.87 4.78 -104.65 -0.50 -1.37 16 7 C -0.14 -1.84 8.76 -39.55 -0.35 -2.18 16 8 C -0.10 -1.28 10.04 -39.61 -0.40 -1.68 16 9 C -0.16 -2.29 9.97 -39.39 -0.39 -2.69 16 10 C 0.16 2.81 6.30 -83.69 -0.53 2.29 16 11 N -0.69 -12.43 5.19 -9.86 -0.05 -12.48 16 12 C 0.52 11.72 6.99 -10.98 -0.08 11.64 16 13 O -0.52 -13.31 12.90 5.55 0.07 -13.23 16 14 C 0.03 0.77 2.64 -92.92 -0.24 0.52 16 15 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 16 C -0.13 -3.03 8.87 37.15 0.33 -2.70 16 17 C -0.50 -14.09 8.37 -34.44 -0.29 -14.38 16 18 H 0.07 2.19 6.75 -52.48 -0.35 1.83 16 19 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16 20 N -0.90 -24.87 11.32 55.43 0.63 -24.24 16 21 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 22 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 25 C -0.12 -2.15 8.32 -39.39 -0.33 -2.48 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.47 6.57 -51.93 -0.34 0.13 16 29 H 0.06 0.62 7.56 -51.93 -0.39 0.23 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.05 0.51 7.39 -51.93 -0.38 0.13 16 32 H 0.06 0.51 6.56 -51.93 -0.34 0.17 16 33 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.12 1.20 7.15 -52.48 -0.38 0.83 16 35 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 36 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 37 H 0.41 6.15 8.39 -40.82 -0.34 5.81 16 38 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.01 0.24 7.67 -51.93 -0.40 -0.16 16 40 H 0.10 2.38 6.07 -51.93 -0.32 2.07 16 41 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 42 H 0.14 2.77 6.11 -52.49 -0.32 2.45 16 LS Contribution 338.12 15.07 5.10 5.10 Total: -1.00 -30.13 338.12 -8.32 -38.45 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -6.49 Total: 5.71 kcal Atomic # 6 Polarization: -13.41 SS G_CDS: -2.55 Total: -15.96 kcal Atomic # 7 Polarization: -37.30 SS G_CDS: 0.58 Total: -36.72 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: 0.07 Total: -13.23 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.13 -8.32 -38.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600197682.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.978 kcal (2) G-P(sol) polarization free energy of solvation -30.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds