Wall clock time and date at job start Mon Mar 30 2020 07:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47073 * 2 1 4 4 H 1.08995 * 109.47485 * 54.99089 * 3 2 1 5 5 C 1.53002 * 109.46892 * 294.99404 * 3 2 1 6 6 C 1.50697 * 109.46897 * 174.99704 * 3 2 1 7 7 C 1.38305 * 119.96687 * 59.97461 * 6 3 2 8 8 C 1.38258 * 120.14390 * 179.97438 * 7 6 3 9 9 C 1.38140 * 120.06876 * 359.76906 * 8 7 6 10 10 C 1.38853 * 119.92677 * 0.50351 * 9 8 7 11 11 N 1.39924 * 120.06657 * 179.74292 * 10 9 8 12 12 C 1.34772 * 119.99871 * 214.81050 * 11 10 9 13 13 O 1.21291 * 120.00370 * 355.37256 * 12 11 10 14 14 C 1.50706 * 120.00080 * 175.37016 * 12 11 10 15 15 H 1.08992 * 109.47167 * 59.99964 * 14 12 11 16 16 C 1.52994 * 109.46793 * 300.00147 * 14 12 11 17 17 C 1.50703 * 109.47234 * 180.02562 * 14 12 11 18 18 H 1.08004 * 119.99729 * 359.97438 * 17 14 12 19 19 C 1.37872 * 120.00140 * 180.02562 * 17 14 12 20 20 N 1.31516 * 120.00002 * 359.97438 * 19 17 14 21 21 Si 1.86798 * 120.00230 * 179.97438 * 19 17 14 22 22 H 1.48503 * 109.47235 * 179.97438 * 21 19 17 23 23 H 1.48505 * 109.47117 * 299.99828 * 21 19 17 24 24 H 1.48498 * 109.47163 * 59.99458 * 21 19 17 25 25 C 1.38095 * 119.96328 * 239.99362 * 6 3 2 26 26 H 1.08998 * 109.47287 * 179.97438 * 1 2 3 27 27 H 1.08989 * 109.47482 * 300.00825 * 1 2 3 28 28 H 1.09004 * 109.46892 * 60.00794 * 1 2 3 29 29 H 1.08995 * 109.47039 * 239.99205 * 2 1 3 30 30 H 1.09005 * 109.46506 * 119.99873 * 2 1 3 31 31 H 1.09000 * 109.47052 * 300.00517 * 5 3 2 32 32 H 1.09001 * 109.46958 * 60.00254 * 5 3 2 33 33 H 1.09001 * 109.47444 * 180.02562 * 5 3 2 34 34 H 1.08003 * 119.92695 * 0.02562 * 7 6 3 35 35 H 1.07998 * 119.96892 * 180.02562 * 8 7 6 36 36 H 1.07999 * 120.03665 * 180.27586 * 9 8 7 37 37 H 0.97001 * 120.00113 * 34.81955 * 11 10 9 38 38 H 1.09002 * 109.47610 * 300.00044 * 16 14 12 39 39 H 1.09000 * 109.47644 * 60.00178 * 16 14 12 40 40 H 1.09003 * 109.47144 * 179.97438 * 16 14 12 41 41 H 0.97001 * 120.00340 * 180.02562 * 20 19 17 42 42 H 1.07990 * 120.03598 * 359.95996 * 25 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8417 5 6 1.6354 2.1264 -1.3074 6 6 3.5419 1.4442 0.1239 7 6 4.3149 0.8156 -0.8353 8 6 5.6932 0.8154 -0.7255 9 6 6.3026 1.4477 0.3408 10 6 5.5291 2.0748 1.3085 11 7 6.1432 2.7115 2.3926 12 6 5.5533 2.6981 3.6043 13 8 4.4520 2.2077 3.7373 14 6 6.2622 3.2923 4.7941 15 1 6.4599 4.3481 4.6093 16 6 7.5851 2.5574 5.0188 17 6 5.3948 3.1499 6.0183 18 1 4.4269 2.6769 5.9422 19 6 5.8364 3.6245 7.2351 20 7 7.0149 4.2010 7.3276 21 14 4.7610 3.4487 8.7523 22 1 5.4596 4.0342 9.9247 23 1 3.4767 4.1616 8.5340 24 1 4.4920 2.0102 9.0044 25 6 4.1448 2.0732 1.1953 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8898 28 1 -0.3633 0.5137 -0.8901 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8901 31 1 2.0700 1.5873 -2.1492 32 1 0.5490 2.1251 -1.3971 33 1 1.9990 3.1540 -1.3077 34 1 3.8410 0.3245 -1.6723 35 1 6.2941 0.3240 -1.4764 36 1 7.3794 1.4511 0.4237 37 1 6.9934 3.1627 2.2721 38 1 7.3875 1.5015 5.2037 39 1 8.2127 2.6600 4.1336 40 1 8.0981 2.9875 5.8791 41 1 7.3258 4.5346 8.1838 42 1 3.5407 2.5642 1.9438 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600197682.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:41:10 Heat of formation + Delta-G solvation = -53.824764 kcal Electronic energy + Delta-G solvation = -21070.017416 eV Core-core repulsion = 18013.209630 eV Total energy + Delta-G solvation = -3056.807785 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.49878 -39.86382 -37.27496 -35.84742 -35.28374 -32.67568 -32.02018 -30.40319 -29.41997 -27.24405 -25.71184 -25.13527 -23.35654 -23.07424 -21.20164 -20.62147 -18.56304 -18.19474 -17.51855 -17.05747 -16.53643 -16.34117 -15.95967 -15.63955 -15.18348 -14.88957 -14.69238 -14.39177 -14.29719 -13.82437 -13.57857 -13.25208 -13.03320 -12.98349 -12.87925 -12.71015 -12.66647 -12.54731 -12.38626 -12.26746 -12.04114 -11.69946 -11.59428 -11.43236 -11.13893 -11.04610 -10.63054 -10.34105 -9.61926 -9.00007 -8.18594 -6.29279 0.39181 0.51837 1.39465 1.40734 1.49355 1.81704 2.23964 2.46066 2.91153 3.11425 3.68874 3.88756 4.14900 4.16431 4.22950 4.30462 4.42637 4.50463 4.53938 4.62796 4.69249 4.73983 4.75178 4.82480 4.89584 4.95494 5.03467 5.10577 5.13857 5.17127 5.24439 5.39374 5.42672 5.48556 5.49419 5.52457 5.64231 5.70202 5.80870 5.90202 6.15665 6.19829 6.62130 6.79228 7.32256 7.42821 8.87251 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.020483 B = 0.004338 C = 0.003727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.653713 B = 6453.776869 C = 7511.177933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.111 4.111 3 C -0.055 4.055 4 H 0.052 0.948 5 C -0.136 4.136 6 C -0.065 4.065 7 C -0.136 4.136 8 C -0.094 4.094 9 C -0.157 4.157 10 C 0.131 3.869 11 N -0.672 5.672 12 C 0.520 3.480 13 O -0.562 6.562 14 C 0.028 3.972 15 H 0.046 0.954 16 C -0.120 4.120 17 C -0.532 4.532 18 H 0.048 0.952 19 C 0.022 3.978 20 N -0.909 5.909 21 Si 0.955 3.045 22 H -0.273 1.273 23 H -0.277 1.277 24 H -0.277 1.277 25 C -0.153 4.153 26 H 0.063 0.937 27 H 0.042 0.958 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.040 0.960 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.045 0.955 34 H 0.149 0.851 35 H 0.160 0.840 36 H 0.145 0.855 37 H 0.420 0.580 38 H 0.021 0.979 39 H 0.053 0.947 40 H 0.074 0.926 41 H 0.266 0.734 42 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.709 -6.045 -19.727 20.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.148 4.148 3 C -0.073 4.073 4 H 0.070 0.930 5 C -0.193 4.193 6 C -0.066 4.066 7 C -0.154 4.154 8 C -0.112 4.112 9 C -0.178 4.178 10 C 0.037 3.963 11 N -0.318 5.318 12 C 0.310 3.690 13 O -0.440 6.440 14 C 0.006 3.994 15 H 0.064 0.936 16 C -0.178 4.178 17 C -0.570 4.570 18 H 0.066 0.934 19 C -0.177 4.177 20 N -0.548 5.548 21 Si 0.781 3.219 22 H -0.197 1.197 23 H -0.202 1.202 24 H -0.202 1.202 25 C -0.174 4.174 26 H 0.082 0.918 27 H 0.061 0.939 28 H 0.091 0.909 29 H 0.100 0.900 30 H 0.059 0.941 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.065 0.935 34 H 0.166 0.834 35 H 0.177 0.823 36 H 0.163 0.837 37 H 0.258 0.742 38 H 0.041 0.959 39 H 0.072 0.928 40 H 0.092 0.908 41 H 0.075 0.925 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -4.341 -6.277 -19.414 20.860 hybrid contribution -0.058 0.474 1.500 1.574 sum -4.399 -5.803 -17.915 19.338 Atomic orbital electron populations 1.21822 0.94671 1.02244 1.02115 1.21536 0.96674 0.94624 1.01982 1.20202 0.89967 0.97694 0.99480 0.92970 1.21837 1.02054 0.99880 0.95519 1.19951 0.96371 0.96665 0.93576 1.21204 0.93840 1.00898 0.99451 1.21307 0.94865 0.97666 0.97334 1.21187 1.00582 1.00082 0.95907 1.18195 0.92450 0.96599 0.89052 1.43683 1.25690 1.55113 1.07269 1.21850 0.85563 0.77097 0.84452 1.90518 1.21776 1.46220 1.85455 1.18822 0.94666 0.96236 0.89636 0.93628 1.21572 0.96234 0.97975 1.02026 1.21217 1.03156 1.39223 0.93396 0.93371 1.25570 0.96451 0.94493 1.01228 1.69929 1.19080 1.39600 1.26239 0.85655 0.78970 0.78352 0.78926 1.19730 1.20222 1.20242 1.21169 0.94021 1.03302 0.98873 0.91817 0.93871 0.90940 0.89983 0.94120 0.90806 0.90896 0.93540 0.83376 0.82253 0.83734 0.74157 0.95941 0.92769 0.90752 0.92463 0.88234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 9.67 71.98 0.70 -1.97 16 2 C -0.11 -2.33 5.14 30.59 0.16 -2.17 16 3 C -0.05 -1.33 2.56 -11.54 -0.03 -1.36 16 4 H 0.05 1.51 7.87 -2.39 -0.02 1.50 16 5 C -0.14 -2.48 8.76 71.98 0.63 -1.84 16 6 C -0.07 -1.85 4.78 -19.88 -0.10 -1.94 16 7 C -0.14 -3.00 8.76 22.29 0.20 -2.80 16 8 C -0.09 -1.96 10.04 22.25 0.22 -1.74 16 9 C -0.16 -4.05 9.97 22.39 0.22 -3.83 16 10 C 0.13 4.49 6.30 38.15 0.24 4.73 16 11 N -0.67 -24.57 5.19 -303.50 -1.58 -26.14 16 12 C 0.52 24.56 6.99 87.66 0.61 25.17 16 13 O -0.56 -30.57 12.90 -3.07 -0.04 -30.61 16 14 C 0.03 1.40 2.64 -12.29 -0.03 1.37 16 15 H 0.05 2.37 8.14 -2.39 -0.02 2.35 16 16 C -0.12 -5.48 8.87 71.98 0.64 -4.84 16 17 C -0.53 -31.01 8.37 25.60 0.21 -30.80 16 18 H 0.05 3.01 6.75 -2.91 -0.02 2.99 16 19 C 0.02 1.24 5.30 84.65 0.45 1.69 16 20 N -0.91 -51.01 11.32 21.45 0.24 -50.76 16 21 Si 0.96 45.19 29.54 68.60 2.03 47.22 16 22 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 23 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 24 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 25 C -0.15 -5.61 8.32 22.39 0.19 -5.43 16 26 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.07 1.03 6.57 -2.39 -0.02 1.02 16 29 H 0.08 1.38 7.56 -2.39 -0.02 1.36 16 30 H 0.04 1.04 8.14 -2.38 -0.02 1.02 16 31 H 0.07 1.08 7.39 -2.39 -0.02 1.06 16 32 H 0.07 1.11 6.56 -2.39 -0.02 1.10 16 33 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.15 2.32 7.15 -2.91 -0.02 2.30 16 35 H 0.16 2.12 8.06 -2.91 -0.02 2.09 16 36 H 0.14 2.97 8.06 -2.91 -0.02 2.95 16 37 H 0.42 12.47 8.39 -92.71 -0.78 11.69 16 38 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.05 1.97 7.67 -2.39 -0.02 1.95 16 40 H 0.07 3.73 6.07 -2.39 -0.01 3.72 16 41 H 0.27 14.14 8.31 -92.71 -0.77 13.37 16 42 H 0.10 4.39 6.11 -2.92 -0.02 4.37 16 Total: -1.00 -68.83 338.12 5.20 -63.63 By element: Atomic # 1 Polarization: 22.19 SS G_CDS: 0.23 Total: 22.43 kcal Atomic # 6 Polarization: -30.07 SS G_CDS: 4.31 Total: -25.76 kcal Atomic # 7 Polarization: -75.57 SS G_CDS: -1.33 Total: -76.91 kcal Atomic # 8 Polarization: -30.57 SS G_CDS: -0.04 Total: -30.61 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -68.83 5.20 -63.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600197682.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.806 kcal (2) G-P(sol) polarization free energy of solvation -68.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds