Wall clock time and date at job start Mon Mar 30 2020 07:33:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53008 * 109.46924 * 2 1 4 4 H 1.09000 * 110.33256 * 304.20719 * 3 2 1 5 5 C 1.54480 * 110.36920 * 181.83754 * 3 2 1 6 6 C 1.54507 * 104.06279 * 217.19081 * 5 3 2 7 7 H 1.08996 * 110.63015 * 118.69754 * 6 5 3 8 8 N 1.46900 * 110.51437 * 241.35930 * 6 5 3 9 9 C 1.46895 * 111.00205 * 201.09746 * 8 6 5 10 10 H 1.08993 * 109.47174 * 34.99228 * 9 8 6 11 11 C 1.50701 * 109.46796 * 274.99601 * 9 8 6 12 12 H 1.08002 * 119.99911 * 330.31252 * 11 9 8 13 13 C 1.37878 * 120.00270 * 150.03499 * 11 9 8 14 14 N 1.31514 * 120.00291 * 174.78780 * 13 11 9 15 15 Si 1.86804 * 119.99680 * 354.78847 * 13 11 9 16 16 H 1.48500 * 109.47102 * 84.76608 * 15 13 11 17 17 H 1.48500 * 109.47310 * 204.76833 * 15 13 11 18 18 H 1.48505 * 109.46888 * 324.76636 * 15 13 11 19 19 C 1.50699 * 109.47359 * 154.99615 * 9 8 6 20 20 C 1.38239 * 119.99745 * 47.34027 * 19 9 8 21 21 C 1.38238 * 119.99529 * 179.76788 * 20 19 9 22 22 C 1.38226 * 120.00064 * 0.50387 * 21 20 19 23 23 C 1.38233 * 120.00347 * 359.74942 * 22 21 20 24 24 C 1.38232 * 119.99796 * 359.97438 * 23 22 21 25 25 C 1.54485 * 104.06190 * 359.97438 * 6 5 3 26 26 O 1.44423 * 104.80208 * 23.98267 * 25 6 5 27 27 H 1.09001 * 109.46979 * 299.99810 * 1 2 3 28 28 H 1.08996 * 109.47128 * 59.99616 * 1 2 3 29 29 H 1.08994 * 109.46964 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.46851 * 240.00610 * 2 1 3 31 31 H 1.08996 * 109.47631 * 120.00228 * 2 1 3 32 32 H 1.09001 * 110.51264 * 98.54757 * 5 3 2 33 33 H 1.08999 * 110.51210 * 335.83487 * 5 3 2 34 34 H 1.00902 * 110.99537 * 325.05186 * 8 6 5 35 35 H 0.97000 * 119.99866 * 180.02562 * 14 13 11 36 36 H 1.08001 * 120.00222 * 359.97438 * 20 19 9 37 37 H 1.08000 * 119.99670 * 180.23316 * 21 20 19 38 38 H 1.08007 * 120.00351 * 179.72740 * 22 21 20 39 39 H 1.07995 * 120.00281 * 179.97438 * 23 22 21 40 40 H 1.08001 * 120.00419 * 179.97438 * 24 23 22 41 41 H 1.08997 * 110.37204 * 142.80747 * 25 6 5 42 42 H 1.08998 * 110.37848 * 265.14871 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6245 1.9912 -0.8453 5 6 3.5839 1.4671 -0.0464 6 6 3.9680 2.6571 0.8611 7 1 4.5675 2.3180 1.7058 8 7 4.6939 3.6772 0.0927 9 6 5.4843 4.5410 0.9798 10 1 5.8670 3.9525 1.8135 11 6 4.6126 5.6514 1.5071 12 1 3.7878 6.0183 0.9141 13 6 4.8643 6.1951 2.7489 14 7 4.1700 7.2311 3.1662 15 14 6.1918 5.4601 3.8385 16 1 7.5097 6.0371 3.4706 17 1 5.8943 5.7716 5.2596 18 1 6.2265 3.9873 3.6513 19 6 6.6379 5.1305 0.2098 20 6 6.4222 5.6955 -1.0333 21 6 7.4796 6.2406 -1.7375 22 6 8.7541 6.2113 -1.2033 23 6 8.9706 5.6417 0.0375 24 6 7.9124 5.1017 0.7442 25 6 2.6106 3.2112 1.3480 26 8 1.6975 2.0975 1.2406 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 3.9328 1.6357 -1.0653 33 1 3.9927 0.5374 0.3494 34 1 5.2775 3.2518 -0.6119 35 1 4.3474 7.6138 4.0397 36 1 5.4272 5.7140 -1.4529 37 1 7.3105 6.6853 -2.7071 38 1 9.5810 6.6332 -1.7554 39 1 9.9664 5.6184 0.4547 40 1 8.0815 4.6563 1.7134 41 1 2.6853 3.5420 2.3838 42 1 2.2846 4.0321 0.7092 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688451758.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:33:52 Heat of formation + Delta-G solvation = -25.087094 kcal Electronic energy + Delta-G solvation = -21633.625268 eV Core-core repulsion = 18578.063641 eV Total energy + Delta-G solvation = -3055.561627 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.32553 -38.56381 -35.47491 -33.33946 -32.59346 -31.31257 -30.26570 -29.08868 -27.19089 -26.35532 -23.33539 -22.57477 -21.96923 -20.81380 -20.18782 -19.87085 -17.05654 -16.28116 -15.92562 -15.41424 -15.13936 -14.80947 -14.30765 -14.27237 -14.00354 -13.43270 -13.21298 -13.01267 -12.83582 -12.81820 -12.45650 -12.34474 -12.04711 -11.51470 -11.37672 -11.09971 -10.92721 -10.86374 -10.69970 -10.60272 -10.47328 -10.19738 -10.12262 -9.88229 -9.57117 -9.17171 -8.68239 -8.27283 -7.95541 -7.54130 -6.17486 -4.14817 2.02799 2.08032 3.20124 3.23984 3.29124 4.29934 4.31913 4.46076 4.82812 4.93568 4.98691 5.12927 5.24510 5.37322 5.44961 5.47480 5.51021 5.57044 5.65940 5.75210 5.88324 5.94726 5.98748 6.00854 6.08828 6.14372 6.21431 6.23698 6.29073 6.37806 6.52253 6.58377 6.65659 6.75746 6.78852 7.06913 7.11154 7.26416 7.42985 7.48601 7.70675 7.83162 8.15289 8.57981 8.95307 9.44602 10.94523 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.016816 B = 0.005885 C = 0.004847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.697749 B = 4757.090084 C = 5775.736263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.117 4.117 3 C 0.079 3.921 4 H 0.066 0.934 5 C -0.153 4.153 6 C 0.068 3.932 7 H 0.046 0.954 8 N -0.664 5.664 9 C 0.209 3.791 10 H 0.020 0.980 11 C -0.484 4.484 12 H 0.086 0.914 13 C 0.076 3.924 14 N -0.888 5.888 15 Si 0.859 3.141 16 H -0.268 1.268 17 H -0.288 1.288 18 H -0.267 1.267 19 C -0.048 4.048 20 C -0.096 4.096 21 C -0.127 4.127 22 C -0.146 4.146 23 C -0.124 4.124 24 C -0.136 4.136 25 C 0.068 3.932 26 O -0.383 6.383 27 H 0.062 0.938 28 H 0.051 0.949 29 H 0.049 0.951 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.322 0.678 35 H 0.265 0.735 36 H 0.126 0.874 37 H 0.111 0.889 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.105 0.895 41 H 0.092 0.908 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.914 -10.567 -7.539 13.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.155 4.155 3 C 0.021 3.979 4 H 0.084 0.916 5 C -0.191 4.191 6 C -0.043 4.043 7 H 0.064 0.936 8 N -0.296 5.296 9 C 0.102 3.898 10 H 0.037 0.963 11 C -0.522 4.522 12 H 0.104 0.896 13 C -0.127 4.127 14 N -0.525 5.525 15 Si 0.687 3.313 16 H -0.194 1.194 17 H -0.214 1.214 18 H -0.192 1.192 19 C -0.050 4.050 20 C -0.114 4.114 21 C -0.145 4.145 22 C -0.165 4.165 23 C -0.142 4.142 24 C -0.155 4.155 25 C -0.009 4.009 26 O -0.302 6.302 27 H 0.081 0.919 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.097 0.903 33 H 0.087 0.913 34 H 0.139 0.861 35 H 0.075 0.925 36 H 0.144 0.856 37 H 0.130 0.870 38 H 0.127 0.873 39 H 0.127 0.873 40 H 0.124 0.876 41 H 0.110 0.890 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.159 -10.060 -7.231 12.443 hybrid contribution 1.818 -0.553 0.953 2.126 sum 2.977 -10.613 -6.277 12.685 Atomic orbital electron populations 1.21709 0.95519 1.01012 1.02407 1.21591 0.96568 0.95181 1.02127 1.22863 0.93256 0.93334 0.88468 0.91617 1.23174 0.96597 0.98564 1.00790 1.22723 0.96676 0.90148 0.94733 0.93565 1.60762 1.32565 1.20697 1.15573 1.18895 0.88749 0.92721 0.89475 0.96251 1.20843 1.13636 1.16060 1.01668 0.89623 1.24972 0.95487 0.94571 0.97674 1.69873 1.40610 1.21925 1.20085 0.87155 0.83516 0.80129 0.80528 1.19350 1.21374 1.19228 1.20697 0.93993 0.96567 0.93720 1.20969 0.98678 0.97203 0.94567 1.21085 0.93217 1.00425 0.99753 1.20880 0.96854 1.02311 0.96425 1.20929 0.98227 0.99689 0.95373 1.21010 0.93005 1.01944 0.99506 1.23464 0.86400 0.88292 1.02738 1.89070 1.57589 1.44131 1.39388 0.91907 0.92942 0.93203 0.91235 0.91459 0.90312 0.91266 0.86076 0.92452 0.85639 0.87049 0.87295 0.87291 0.87644 0.88983 0.90532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.83 37.16 0.37 -1.29 16 2 C -0.12 -1.37 5.57 -26.73 -0.15 -1.52 16 3 C 0.08 1.14 3.27 -25.95 -0.08 1.05 16 4 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 5 C -0.15 -2.17 6.30 -25.16 -0.16 -2.33 16 6 C 0.07 1.22 3.43 -66.14 -0.23 0.99 16 7 H 0.05 0.88 7.51 -51.93 -0.39 0.49 16 8 N -0.66 -12.58 5.70 -100.54 -0.57 -13.15 16 9 C 0.21 4.62 1.86 -70.02 -0.13 4.49 16 10 H 0.02 0.46 4.33 -51.93 -0.22 0.24 16 11 C -0.48 -12.67 8.04 -34.44 -0.28 -12.95 16 12 H 0.09 2.49 8.06 -52.49 -0.42 2.07 16 13 C 0.08 2.10 5.47 -17.82 -0.10 2.01 16 14 N -0.89 -26.15 13.96 55.43 0.77 -25.38 16 15 Si 0.86 20.77 25.30 -169.99 -4.30 16.47 16 16 H -0.27 -6.38 6.96 56.52 0.39 -5.99 16 17 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 18 H -0.27 -6.18 6.28 56.52 0.36 -5.83 16 19 C -0.05 -1.01 4.57 -104.62 -0.48 -1.48 16 20 C -0.10 -1.83 9.10 -39.58 -0.36 -2.19 16 21 C -0.13 -2.13 10.05 -39.59 -0.40 -2.53 16 22 C -0.15 -2.38 10.05 -39.59 -0.40 -2.77 16 23 C -0.12 -2.15 10.05 -39.59 -0.40 -2.55 16 24 C -0.14 -2.70 8.89 -39.59 -0.35 -3.06 16 25 C 0.07 1.32 6.35 37.94 0.24 1.56 16 26 O -0.38 -6.84 11.00 -35.23 -0.39 -7.22 16 27 H 0.06 0.79 7.91 -51.93 -0.41 0.38 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.08 1.02 7.62 -51.93 -0.40 0.62 16 33 H 0.07 0.89 7.87 -51.93 -0.41 0.48 16 34 H 0.32 5.44 7.63 -39.29 -0.30 5.14 16 35 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 36 H 0.13 2.39 7.94 -52.49 -0.42 1.98 16 37 H 0.11 1.57 8.06 -52.49 -0.42 1.14 16 38 H 0.11 1.45 8.06 -52.48 -0.42 1.02 16 39 H 0.11 1.61 8.06 -52.49 -0.42 1.18 16 40 H 0.11 2.10 6.49 -52.49 -0.34 1.75 16 41 H 0.09 1.95 8.14 -51.93 -0.42 1.53 16 42 H 0.08 1.60 8.06 -51.93 -0.42 1.18 16 LS Contribution 333.87 15.07 5.03 5.03 Total: -1.00 -28.55 333.87 -9.08 -37.63 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: -6.72 Total: 9.20 kcal Atomic # 6 Polarization: -19.68 SS G_CDS: -2.90 Total: -22.58 kcal Atomic # 7 Polarization: -38.73 SS G_CDS: 0.20 Total: -38.53 kcal Atomic # 8 Polarization: -6.84 SS G_CDS: -0.39 Total: -7.22 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -4.30 Total: 16.47 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -28.55 -9.08 -37.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688451758.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.547 kcal (2) G-P(sol) polarization free energy of solvation -28.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds