Wall clock time and date at job start Mon Mar 30 2020 07:33:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53008 * 109.46924 * 2 1 4 4 H 1.09000 * 110.33256 * 304.20719 * 3 2 1 5 5 C 1.54480 * 110.36920 * 181.83754 * 3 2 1 6 6 C 1.54507 * 104.06279 * 217.19081 * 5 3 2 7 7 H 1.08996 * 110.63015 * 118.69754 * 6 5 3 8 8 N 1.46900 * 110.51437 * 241.35930 * 6 5 3 9 9 C 1.46895 * 111.00205 * 201.09746 * 8 6 5 10 10 H 1.08993 * 109.47174 * 34.99228 * 9 8 6 11 11 C 1.50701 * 109.46796 * 274.99601 * 9 8 6 12 12 H 1.08002 * 119.99911 * 330.31252 * 11 9 8 13 13 C 1.37878 * 120.00270 * 150.03499 * 11 9 8 14 14 N 1.31514 * 120.00291 * 174.78780 * 13 11 9 15 15 Si 1.86804 * 119.99680 * 354.78847 * 13 11 9 16 16 H 1.48500 * 109.47102 * 84.76608 * 15 13 11 17 17 H 1.48500 * 109.47310 * 204.76833 * 15 13 11 18 18 H 1.48505 * 109.46888 * 324.76636 * 15 13 11 19 19 C 1.50699 * 109.47359 * 154.99615 * 9 8 6 20 20 C 1.38239 * 119.99745 * 47.34027 * 19 9 8 21 21 C 1.38238 * 119.99529 * 179.76788 * 20 19 9 22 22 C 1.38226 * 120.00064 * 0.50387 * 21 20 19 23 23 C 1.38233 * 120.00347 * 359.74942 * 22 21 20 24 24 C 1.38232 * 119.99796 * 359.97438 * 23 22 21 25 25 C 1.54485 * 104.06190 * 359.97438 * 6 5 3 26 26 O 1.44423 * 104.80208 * 23.98267 * 25 6 5 27 27 H 1.09001 * 109.46979 * 299.99810 * 1 2 3 28 28 H 1.08996 * 109.47128 * 59.99616 * 1 2 3 29 29 H 1.08994 * 109.46964 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.46851 * 240.00610 * 2 1 3 31 31 H 1.08996 * 109.47631 * 120.00228 * 2 1 3 32 32 H 1.09001 * 110.51264 * 98.54757 * 5 3 2 33 33 H 1.08999 * 110.51210 * 335.83487 * 5 3 2 34 34 H 1.00902 * 110.99537 * 325.05186 * 8 6 5 35 35 H 0.97000 * 119.99866 * 180.02562 * 14 13 11 36 36 H 1.08001 * 120.00222 * 359.97438 * 20 19 9 37 37 H 1.08000 * 119.99670 * 180.23316 * 21 20 19 38 38 H 1.08007 * 120.00351 * 179.72740 * 22 21 20 39 39 H 1.07995 * 120.00281 * 179.97438 * 23 22 21 40 40 H 1.08001 * 120.00419 * 179.97438 * 24 23 22 41 41 H 1.08997 * 110.37204 * 142.80747 * 25 6 5 42 42 H 1.08998 * 110.37848 * 265.14871 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6245 1.9912 -0.8453 5 6 3.5839 1.4671 -0.0464 6 6 3.9680 2.6571 0.8611 7 1 4.5675 2.3180 1.7058 8 7 4.6939 3.6772 0.0927 9 6 5.4843 4.5410 0.9798 10 1 5.8670 3.9525 1.8135 11 6 4.6126 5.6514 1.5071 12 1 3.7878 6.0183 0.9141 13 6 4.8643 6.1951 2.7489 14 7 4.1700 7.2311 3.1662 15 14 6.1918 5.4601 3.8385 16 1 7.5097 6.0371 3.4706 17 1 5.8943 5.7716 5.2596 18 1 6.2265 3.9873 3.6513 19 6 6.6379 5.1305 0.2098 20 6 6.4222 5.6955 -1.0333 21 6 7.4796 6.2406 -1.7375 22 6 8.7541 6.2113 -1.2033 23 6 8.9706 5.6417 0.0375 24 6 7.9124 5.1017 0.7442 25 6 2.6106 3.2112 1.3480 26 8 1.6975 2.0975 1.2406 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 3.9328 1.6357 -1.0653 33 1 3.9927 0.5374 0.3494 34 1 5.2775 3.2518 -0.6119 35 1 4.3474 7.6138 4.0397 36 1 5.4272 5.7140 -1.4529 37 1 7.3105 6.6853 -2.7071 38 1 9.5810 6.6332 -1.7554 39 1 9.9664 5.6184 0.4547 40 1 8.0815 4.6563 1.7134 41 1 2.6853 3.5420 2.3838 42 1 2.2846 4.0321 0.7092 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688451758.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:33:51 Heat of formation + Delta-G solvation = -43.043487 kcal Electronic energy + Delta-G solvation = -21634.403916 eV Core-core repulsion = 18578.063641 eV Total energy + Delta-G solvation = -3056.340274 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.74239 -39.97738 -37.02648 -34.56955 -34.38345 -32.89155 -31.66144 -30.39198 -28.66029 -28.15848 -24.59182 -24.15717 -23.37593 -21.96765 -21.57843 -21.50532 -19.04344 -17.71053 -17.28464 -16.82347 -16.62455 -16.27381 -16.02982 -15.81277 -15.39320 -14.90303 -14.53463 -14.47376 -14.29951 -14.10004 -13.91447 -13.77233 -13.46847 -12.95219 -12.66871 -12.64326 -12.49582 -12.27249 -12.14167 -11.92939 -11.83762 -11.74724 -11.49865 -11.45493 -11.36735 -10.76201 -10.64732 -9.67886 -9.42421 -9.17200 -8.30266 -6.29818 0.61163 0.66876 1.25545 1.26706 1.33345 2.27671 2.90227 3.02489 3.14616 3.48247 3.63340 3.77490 4.09636 4.12792 4.21503 4.24633 4.29211 4.35698 4.39704 4.43080 4.50831 4.67960 4.71751 4.81910 4.87292 4.91361 4.96045 5.01322 5.06830 5.10288 5.12198 5.21549 5.30860 5.31948 5.46349 5.52388 5.69577 5.73795 5.84715 5.97456 6.06500 6.27707 6.47209 6.75136 6.86006 7.33308 8.85864 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.016816 B = 0.005885 C = 0.004847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.697749 B = 4757.090084 C = 5775.736263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.112 4.112 3 C 0.070 3.930 4 H 0.066 0.934 5 C -0.139 4.139 6 C 0.066 3.934 7 H 0.036 0.964 8 N -0.664 5.664 9 C 0.218 3.782 10 H 0.010 0.990 11 C -0.471 4.471 12 H 0.042 0.958 13 C 0.021 3.979 14 N -0.941 5.941 15 Si 0.913 3.087 16 H -0.257 1.257 17 H -0.292 1.292 18 H -0.253 1.253 19 C -0.074 4.074 20 C -0.110 4.110 21 C -0.123 4.123 22 C -0.136 4.136 23 C -0.125 4.125 24 C -0.156 4.156 25 C 0.075 3.925 26 O -0.395 6.395 27 H 0.039 0.961 28 H 0.056 0.944 29 H 0.070 0.930 30 H 0.099 0.901 31 H 0.066 0.934 32 H 0.097 0.903 33 H 0.090 0.910 34 H 0.338 0.662 35 H 0.264 0.736 36 H 0.116 0.884 37 H 0.142 0.858 38 H 0.149 0.851 39 H 0.139 0.861 40 H 0.100 0.900 41 H 0.062 0.938 42 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.389 -12.420 -9.580 16.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.149 4.149 3 C 0.013 3.987 4 H 0.084 0.916 5 C -0.177 4.177 6 C -0.045 4.045 7 H 0.054 0.946 8 N -0.297 5.297 9 C 0.110 3.890 10 H 0.027 0.973 11 C -0.509 4.509 12 H 0.060 0.940 13 C -0.177 4.177 14 N -0.581 5.581 15 Si 0.739 3.261 16 H -0.181 1.181 17 H -0.218 1.218 18 H -0.178 1.178 19 C -0.075 4.075 20 C -0.129 4.129 21 C -0.141 4.141 22 C -0.154 4.154 23 C -0.143 4.143 24 C -0.174 4.174 25 C -0.002 4.002 26 O -0.314 6.314 27 H 0.059 0.941 28 H 0.075 0.925 29 H 0.089 0.911 30 H 0.117 0.883 31 H 0.085 0.915 32 H 0.116 0.884 33 H 0.109 0.891 34 H 0.157 0.843 35 H 0.073 0.927 36 H 0.134 0.866 37 H 0.160 0.840 38 H 0.166 0.834 39 H 0.157 0.843 40 H 0.119 0.881 41 H 0.081 0.919 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.646 -11.948 -9.304 15.576 hybrid contribution 1.013 0.019 1.422 1.746 sum 4.660 -11.929 -7.882 15.038 Atomic orbital electron populations 1.21710 0.95267 1.02144 1.01539 1.21619 0.96798 0.93015 1.03502 1.23171 0.93720 0.94921 0.86891 0.91597 1.23133 0.96223 0.97419 1.00947 1.22719 0.95176 0.91221 0.95383 0.94626 1.60531 1.32415 1.21209 1.15495 1.18617 0.88798 0.91621 0.89999 0.97293 1.20932 1.12704 1.16348 1.00954 0.94000 1.25661 0.97797 0.95018 0.99227 1.70022 1.43241 1.24179 1.20656 0.86271 0.81302 0.80184 0.78335 1.18141 1.21818 1.17777 1.20522 0.93939 0.98219 0.94814 1.21005 0.99269 0.98078 0.94532 1.21443 0.92806 0.99215 1.00662 1.21360 0.97635 1.00500 0.95918 1.21307 0.98819 0.98542 0.95609 1.21136 0.93444 1.03039 0.99815 1.23134 0.88111 0.88566 1.00429 1.89059 1.57391 1.43539 1.41449 0.94138 0.92495 0.91082 0.88286 0.91529 0.88405 0.89120 0.84254 0.92722 0.86628 0.83991 0.83360 0.84328 0.88147 0.91948 0.92972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.05 9.83 71.98 0.71 -2.34 16 2 C -0.11 -2.34 5.57 30.60 0.17 -2.17 16 3 C 0.07 1.95 3.27 31.10 0.10 2.05 16 4 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 5 C -0.14 -3.67 6.30 31.61 0.20 -3.47 16 6 C 0.07 2.37 3.43 45.93 0.16 2.53 16 7 H 0.04 1.37 7.51 -2.39 -0.02 1.36 16 8 N -0.66 -25.41 5.70 -472.00 -2.69 -28.09 16 9 C 0.22 9.81 1.86 43.42 0.08 9.89 16 10 H 0.01 0.45 4.33 -2.39 -0.01 0.43 16 11 C -0.47 -25.92 8.04 25.60 0.21 -25.72 16 12 H 0.04 2.62 8.06 -2.91 -0.02 2.59 16 13 C 0.02 1.21 5.47 84.65 0.46 1.68 16 14 N -0.94 -58.40 13.96 21.45 0.30 -58.10 16 15 Si 0.91 43.96 25.30 68.60 1.74 45.69 16 16 H -0.26 -11.78 6.96 99.48 0.69 -11.09 16 17 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 18 H -0.25 -11.46 6.28 99.48 0.63 -10.84 16 19 C -0.07 -3.03 4.57 -19.87 -0.09 -3.12 16 20 C -0.11 -4.12 9.10 22.27 0.20 -3.92 16 21 C -0.12 -3.75 10.05 22.27 0.22 -3.53 16 22 C -0.14 -3.81 10.05 22.27 0.22 -3.59 16 23 C -0.12 -3.89 10.05 22.27 0.22 -3.66 16 24 C -0.16 -5.92 8.89 22.27 0.20 -5.72 16 25 C 0.08 3.09 6.35 72.49 0.46 3.55 16 26 O -0.39 -14.44 11.00 -148.98 -1.64 -16.08 16 27 H 0.04 0.99 7.91 -2.39 -0.02 0.98 16 28 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.10 2.23 7.62 -2.39 -0.02 2.21 16 33 H 0.09 2.05 7.87 -2.39 -0.02 2.03 16 34 H 0.34 11.13 7.63 -89.69 -0.68 10.44 16 35 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 36 H 0.12 4.44 7.94 -2.91 -0.02 4.42 16 37 H 0.14 3.41 8.06 -2.91 -0.02 3.38 16 38 H 0.15 3.02 8.06 -2.91 -0.02 3.00 16 39 H 0.14 3.45 8.06 -2.91 -0.02 3.42 16 40 H 0.10 3.84 6.49 -2.91 -0.02 3.82 16 41 H 0.06 2.88 8.14 -2.39 -0.02 2.86 16 42 H 0.05 2.36 8.06 -2.39 -0.02 2.34 16 Total: -1.00 -65.93 333.87 1.45 -64.48 By element: Atomic # 1 Polarization: 29.44 SS G_CDS: 0.21 Total: 29.66 kcal Atomic # 6 Polarization: -41.09 SS G_CDS: 3.53 Total: -37.56 kcal Atomic # 7 Polarization: -83.81 SS G_CDS: -2.39 Total: -86.20 kcal Atomic # 8 Polarization: -14.44 SS G_CDS: -1.64 Total: -16.08 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 1.74 Total: 45.69 kcal Total: -65.93 1.45 -64.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688451758.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.440 kcal (2) G-P(sol) polarization free energy of solvation -65.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds