Wall clock time and date at job start Mon Mar 30 2020 07:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53007 * 109.47022 * 2 1 4 4 C 1.53000 * 109.47233 * 119.99520 * 2 1 3 5 5 H 1.08997 * 110.56775 * 303.89828 * 4 2 1 6 6 C 1.54481 * 110.51055 * 181.21163 * 4 2 1 7 7 O 1.44433 * 104.80231 * 217.37928 * 6 4 2 8 8 C 1.44420 * 105.27455 * 40.51478 * 7 6 4 9 9 C 1.54482 * 104.80454 * 319.48825 * 8 7 6 10 10 H 1.08999 * 110.51290 * 265.19824 * 9 8 7 11 11 N 1.46495 * 110.51405 * 142.62456 * 9 8 7 12 12 C 1.38859 * 120.00123 * 90.68823 * 11 9 8 13 13 C 1.39572 * 119.84347 * 180.02562 * 12 11 9 14 14 C 1.36333 * 120.15954 * 179.97438 * 13 12 11 15 15 C 1.40886 * 119.84107 * 0.02862 * 14 13 12 16 16 C 1.41133 * 120.15584 * 180.02562 * 15 14 13 17 17 H 1.08000 * 120.00491 * 24.07894 * 16 15 14 18 18 C 1.39871 * 119.99539 * 204.07535 * 16 15 14 19 19 N 1.30910 * 119.99780 * 214.79249 * 18 16 15 20 20 Si 1.86793 * 119.99865 * 34.79852 * 18 16 15 21 21 H 1.48500 * 109.47068 * 267.27742 * 20 18 16 22 22 H 1.48495 * 109.47478 * 27.28403 * 20 18 16 23 23 H 1.48512 * 109.47109 * 147.28309 * 20 18 16 24 24 C 1.40886 * 119.68549 * 0.26805 * 15 14 13 25 25 C 1.36340 * 119.83754 * 359.42121 * 24 15 14 26 26 H 1.09004 * 109.47213 * 306.57650 * 1 2 3 27 27 H 1.09003 * 109.47446 * 66.57324 * 1 2 3 28 28 H 1.09000 * 109.47312 * 186.57247 * 1 2 3 29 29 H 1.09000 * 109.47359 * 240.00001 * 2 1 3 30 30 H 1.08992 * 109.47003 * 60.00159 * 3 2 1 31 31 H 1.09004 * 109.47037 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.46796 * 299.99857 * 3 2 1 33 33 H 1.09001 * 110.36731 * 98.55489 * 6 4 2 34 34 H 1.08990 * 110.46708 * 336.25629 * 6 4 2 35 35 H 1.09002 * 110.37730 * 200.65721 * 8 7 6 36 36 H 1.09004 * 110.46735 * 78.36583 * 8 7 6 37 37 H 0.96999 * 119.99911 * 270.69268 * 11 9 8 38 38 H 1.08002 * 119.91462 * 0.02562 * 13 12 11 39 39 H 1.08006 * 120.08074 * 180.02562 * 14 13 12 40 40 H 0.96996 * 120.00021 * 5.10270 * 19 18 16 41 41 H 1.08002 * 120.08310 * 179.73119 * 24 15 14 42 42 H 1.07996 * 119.92046 * 180.27576 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7211 1.2493 5 1 1.6310 -0.2629 2.1497 6 6 3.5842 -0.7087 1.2889 7 8 3.9499 -1.9985 1.8262 8 6 3.0463 -2.9391 1.2062 9 6 1.6780 -2.2222 1.1935 10 1 1.0891 -2.5078 2.0652 11 7 0.9491 -2.5290 -0.0396 12 6 0.0889 -3.6182 -0.0851 13 6 -0.6035 -3.9078 -1.2619 14 6 -1.4492 -4.9758 -1.3138 15 6 -1.6239 -5.7877 -0.1757 16 6 -2.4973 -6.8954 -0.2223 17 1 -2.7279 -7.3619 -1.1686 18 6 -3.0641 -7.3889 0.9573 19 7 -3.2738 -8.6738 1.0950 20 14 -3.5221 -6.2147 2.3359 21 1 -2.3885 -6.1039 3.2888 22 1 -3.8232 -4.8766 1.7670 23 1 -4.7189 -6.7304 3.0483 24 6 -0.9264 -5.4857 1.0105 25 6 -0.0791 -4.4182 1.0462 26 1 -0.3634 0.6124 0.8253 27 1 -0.3634 0.4086 -0.9430 28 1 -0.3634 -1.0209 0.1176 29 1 1.8933 -0.5138 -0.8900 30 1 1.6766 1.9563 0.8899 31 1 3.1300 1.4426 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 3.9405 0.0888 1.9409 34 1 3.9902 -0.5870 0.2848 35 1 2.9894 -3.8550 1.7944 36 1 3.3673 -3.1619 0.1886 37 1 1.0673 -1.9713 -0.8244 38 1 -0.4683 -3.2847 -2.1336 39 1 -1.9840 -5.1990 -2.2252 40 1 -2.9691 -9.2909 0.4115 41 1 -1.0589 -6.1012 1.8881 42 1 0.4596 -4.1880 1.9535 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699457105.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:00 Heat of formation + Delta-G solvation = -23.990850 kcal Electronic energy + Delta-G solvation = -21703.955607 eV Core-core repulsion = 18648.441517 eV Total energy + Delta-G solvation = -3055.514090 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.24383 -37.91281 -36.11004 -34.52681 -33.04087 -30.36254 -29.68741 -28.96860 -27.68767 -27.08623 -23.90092 -22.91853 -22.34628 -21.23463 -20.42215 -18.93346 -18.11359 -17.13222 -16.19883 -15.73539 -15.55302 -14.80751 -14.19201 -14.12638 -13.88184 -13.79834 -13.55075 -13.09616 -12.79271 -12.44417 -12.32471 -12.25758 -12.23748 -12.07964 -11.54048 -11.28253 -11.20349 -10.90859 -10.81468 -10.60773 -10.56785 -10.40050 -10.15628 -10.03696 -9.80534 -9.30864 -9.12543 -8.56119 -7.77717 -7.28935 -6.65304 -4.18686 2.74826 2.85673 3.27615 3.41404 3.57828 3.83164 4.11908 4.32271 4.44562 4.53061 4.56839 4.80085 5.00731 5.12791 5.21761 5.25860 5.34297 5.50864 5.57341 5.59716 5.64895 5.76231 5.82285 5.87540 5.92850 5.97573 6.03980 6.07951 6.14498 6.23077 6.50893 6.58019 6.68997 6.79535 6.98091 7.26239 7.37707 7.53995 7.64115 7.93748 8.02138 8.24895 8.46647 8.58258 8.77132 8.94336 10.03483 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.026013 B = 0.004629 C = 0.004447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.146951 B = 6047.506562 C = 6294.225572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.082 4.082 3 C -0.149 4.149 4 C -0.125 4.125 5 H 0.087 0.913 6 C 0.050 3.950 7 O -0.379 6.379 8 C 0.027 3.973 9 C 0.136 3.864 10 H 0.089 0.911 11 N -0.747 5.747 12 C 0.071 3.929 13 C -0.136 4.136 14 C -0.186 4.186 15 C 0.070 3.930 16 C -0.538 4.538 17 H 0.073 0.927 18 C 0.055 3.945 19 N -0.808 5.808 20 Si 1.059 2.941 21 H -0.275 1.275 22 H -0.267 1.267 23 H -0.287 1.287 24 C -0.210 4.210 25 C -0.135 4.135 26 H 0.048 0.952 27 H 0.049 0.951 28 H 0.092 0.908 29 H 0.069 0.931 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.087 0.913 34 H 0.058 0.942 35 H 0.092 0.908 36 H 0.062 0.938 37 H 0.390 0.610 38 H 0.089 0.911 39 H 0.094 0.906 40 H 0.287 0.713 41 H 0.101 0.899 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.087 15.827 0.064 18.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.101 4.101 3 C -0.206 4.206 4 C -0.145 4.145 5 H 0.105 0.895 6 C -0.027 4.027 7 O -0.297 6.297 8 C -0.052 4.052 9 C 0.028 3.972 10 H 0.107 0.893 11 N -0.386 5.386 12 C -0.025 4.025 13 C -0.158 4.158 14 C -0.206 4.206 15 C 0.067 3.933 16 C -0.567 4.567 17 H 0.091 0.909 18 C -0.166 4.166 19 N -0.430 5.430 20 Si 0.884 3.116 21 H -0.201 1.201 22 H -0.192 1.192 23 H -0.214 1.214 24 C -0.229 4.229 25 C -0.157 4.157 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.110 0.890 29 H 0.088 0.912 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.105 0.895 34 H 0.076 0.924 35 H 0.110 0.890 36 H 0.081 0.919 37 H 0.228 0.772 38 H 0.107 0.893 39 H 0.112 0.888 40 H 0.098 0.902 41 H 0.119 0.881 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 8.554 15.693 1.833 17.966 hybrid contribution 0.648 -0.005 -2.072 2.170 sum 9.202 15.688 -0.238 18.189 Atomic orbital electron populations 1.22255 0.94158 1.05029 1.01064 1.20971 0.96857 0.95355 0.96924 1.21895 1.00723 0.96096 1.01874 1.22829 0.95930 0.96066 0.99649 0.89471 1.23458 0.93536 0.86813 0.98851 1.89113 1.56935 1.17007 1.66670 1.24127 0.89149 0.93408 0.98476 1.21911 0.92544 0.92384 0.90355 0.89271 1.44233 1.49812 1.32178 1.12342 1.17223 0.98251 0.91985 0.94996 1.19899 1.00827 0.99848 0.95222 1.20540 1.03613 0.97264 0.99157 1.17574 0.92739 0.91800 0.91209 1.20319 1.27096 1.13246 0.95999 0.90853 1.27118 0.91848 0.97380 1.00242 1.70581 1.34644 1.03502 1.34242 0.83829 0.76819 0.75951 0.75017 1.20149 1.19183 1.21389 1.20659 1.02425 1.00866 0.98995 1.20003 1.02364 0.97538 0.95808 0.93281 0.93214 0.88959 0.91233 0.92627 0.92800 0.92644 0.89457 0.92430 0.88981 0.91947 0.77208 0.89284 0.88784 0.90150 0.88130 0.88935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.90 8.55 37.15 0.32 -1.58 16 2 C -0.08 -0.82 1.84 -90.62 -0.17 -0.99 16 3 C -0.15 -1.22 8.94 37.16 0.33 -0.89 16 4 C -0.13 -1.37 2.68 -89.05 -0.24 -1.61 16 5 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 6 C 0.05 0.54 6.09 37.93 0.23 0.77 16 7 O -0.38 -5.25 11.65 -35.23 -0.41 -5.66 16 8 C 0.03 0.38 7.35 37.93 0.28 0.65 16 9 C 0.14 1.86 2.93 -66.36 -0.19 1.67 16 10 H 0.09 1.33 6.33 -51.93 -0.33 1.00 16 11 N -0.75 -11.30 2.95 -50.52 -0.15 -11.45 16 12 C 0.07 1.39 6.46 -83.68 -0.54 0.85 16 13 C -0.14 -2.80 9.82 -39.77 -0.39 -3.19 16 14 C -0.19 -4.36 9.74 -39.27 -0.38 -4.75 16 15 C 0.07 1.80 5.15 -106.80 -0.55 1.25 16 16 C -0.54 -14.71 9.28 -37.87 -0.35 -15.07 16 17 H 0.07 2.08 8.06 -52.49 -0.42 1.66 16 18 C 0.06 1.47 5.12 -17.33 -0.09 1.39 16 19 N -0.81 -21.91 13.66 55.54 0.76 -21.15 16 20 Si 1.06 24.35 25.83 -169.99 -4.39 19.96 16 21 H -0.28 -6.06 6.51 56.52 0.37 -5.70 16 22 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 23 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 24 C -0.21 -5.08 7.61 -39.26 -0.30 -5.38 16 25 C -0.14 -2.87 9.14 -39.77 -0.36 -3.24 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.09 1.29 5.35 -51.93 -0.28 1.01 16 29 H 0.07 0.71 6.56 -51.93 -0.34 0.37 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.40 7.03 -51.93 -0.37 0.04 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.06 0.58 7.56 -51.93 -0.39 0.18 16 35 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 36 H 0.06 0.89 8.06 -51.93 -0.42 0.47 16 37 H 0.39 5.35 5.34 -40.82 -0.22 5.13 16 38 H 0.09 1.60 8.06 -52.49 -0.42 1.17 16 39 H 0.09 2.12 8.06 -52.48 -0.42 1.70 16 40 H 0.29 7.61 8.73 -40.82 -0.36 7.25 16 41 H 0.10 2.47 5.12 -52.49 -0.27 2.20 16 42 H 0.09 1.77 6.15 -52.49 -0.32 1.44 16 LS Contribution 322.91 15.07 4.87 4.87 Total: -1.00 -27.21 322.91 -8.08 -35.29 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: -6.35 Total: 8.26 kcal Atomic # 6 Polarization: -27.70 SS G_CDS: -2.41 Total: -30.10 kcal Atomic # 7 Polarization: -33.22 SS G_CDS: 0.61 Total: -32.61 kcal Atomic # 8 Polarization: -5.25 SS G_CDS: -0.41 Total: -5.66 kcal Atomic # 14 Polarization: 24.35 SS G_CDS: -4.39 Total: 19.96 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -27.21 -8.08 -35.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699457105.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.298 kcal (2) G-P(sol) polarization free energy of solvation -27.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds