Wall clock time and date at job start Mon Mar 30 2020 07:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53007 * 109.47022 * 2 1 4 4 C 1.53000 * 109.47233 * 119.99520 * 2 1 3 5 5 H 1.08997 * 110.56775 * 303.89828 * 4 2 1 6 6 C 1.54481 * 110.51055 * 181.21163 * 4 2 1 7 7 O 1.44433 * 104.80231 * 217.37928 * 6 4 2 8 8 C 1.44420 * 105.27455 * 40.51478 * 7 6 4 9 9 C 1.54482 * 104.80454 * 319.48825 * 8 7 6 10 10 H 1.08999 * 110.51290 * 265.19824 * 9 8 7 11 11 N 1.46495 * 110.51405 * 142.62456 * 9 8 7 12 12 C 1.38859 * 120.00123 * 90.68823 * 11 9 8 13 13 C 1.39572 * 119.84347 * 180.02562 * 12 11 9 14 14 C 1.36333 * 120.15954 * 179.97438 * 13 12 11 15 15 C 1.40886 * 119.84107 * 0.02862 * 14 13 12 16 16 C 1.41133 * 120.15584 * 180.02562 * 15 14 13 17 17 H 1.08000 * 120.00491 * 24.07894 * 16 15 14 18 18 C 1.39871 * 119.99539 * 204.07535 * 16 15 14 19 19 N 1.30910 * 119.99780 * 214.79249 * 18 16 15 20 20 Si 1.86793 * 119.99865 * 34.79852 * 18 16 15 21 21 H 1.48500 * 109.47068 * 267.27742 * 20 18 16 22 22 H 1.48495 * 109.47478 * 27.28403 * 20 18 16 23 23 H 1.48512 * 109.47109 * 147.28309 * 20 18 16 24 24 C 1.40886 * 119.68549 * 0.26805 * 15 14 13 25 25 C 1.36340 * 119.83754 * 359.42121 * 24 15 14 26 26 H 1.09004 * 109.47213 * 306.57650 * 1 2 3 27 27 H 1.09003 * 109.47446 * 66.57324 * 1 2 3 28 28 H 1.09000 * 109.47312 * 186.57247 * 1 2 3 29 29 H 1.09000 * 109.47359 * 240.00001 * 2 1 3 30 30 H 1.08992 * 109.47003 * 60.00159 * 3 2 1 31 31 H 1.09004 * 109.47037 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.46796 * 299.99857 * 3 2 1 33 33 H 1.09001 * 110.36731 * 98.55489 * 6 4 2 34 34 H 1.08990 * 110.46708 * 336.25629 * 6 4 2 35 35 H 1.09002 * 110.37730 * 200.65721 * 8 7 6 36 36 H 1.09004 * 110.46735 * 78.36583 * 8 7 6 37 37 H 0.96999 * 119.99911 * 270.69268 * 11 9 8 38 38 H 1.08002 * 119.91462 * 0.02562 * 13 12 11 39 39 H 1.08006 * 120.08074 * 180.02562 * 14 13 12 40 40 H 0.96996 * 120.00021 * 5.10270 * 19 18 16 41 41 H 1.08002 * 120.08310 * 179.73119 * 24 15 14 42 42 H 1.07996 * 119.92046 * 180.27576 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7211 1.2493 5 1 1.6310 -0.2629 2.1497 6 6 3.5842 -0.7087 1.2889 7 8 3.9499 -1.9985 1.8262 8 6 3.0463 -2.9391 1.2062 9 6 1.6780 -2.2222 1.1935 10 1 1.0891 -2.5078 2.0652 11 7 0.9491 -2.5290 -0.0396 12 6 0.0889 -3.6182 -0.0851 13 6 -0.6035 -3.9078 -1.2619 14 6 -1.4492 -4.9758 -1.3138 15 6 -1.6239 -5.7877 -0.1757 16 6 -2.4973 -6.8954 -0.2223 17 1 -2.7279 -7.3619 -1.1686 18 6 -3.0641 -7.3889 0.9573 19 7 -3.2738 -8.6738 1.0950 20 14 -3.5221 -6.2147 2.3359 21 1 -2.3885 -6.1039 3.2888 22 1 -3.8232 -4.8766 1.7670 23 1 -4.7189 -6.7304 3.0483 24 6 -0.9264 -5.4857 1.0105 25 6 -0.0791 -4.4182 1.0462 26 1 -0.3634 0.6124 0.8253 27 1 -0.3634 0.4086 -0.9430 28 1 -0.3634 -1.0209 0.1176 29 1 1.8933 -0.5138 -0.8900 30 1 1.6766 1.9563 0.8899 31 1 3.1300 1.4426 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 3.9405 0.0888 1.9409 34 1 3.9902 -0.5870 0.2848 35 1 2.9894 -3.8550 1.7944 36 1 3.3673 -3.1619 0.1886 37 1 1.0673 -1.9713 -0.8244 38 1 -0.4683 -3.2847 -2.1336 39 1 -1.9840 -5.1990 -2.2252 40 1 -2.9691 -9.2909 0.4115 41 1 -1.0589 -6.1012 1.8881 42 1 0.4596 -4.1880 1.9535 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699457105.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:00 Heat of formation + Delta-G solvation = -38.976682 kcal Electronic energy + Delta-G solvation = -21704.605441 eV Core-core repulsion = 18648.441517 eV Total energy + Delta-G solvation = -3056.163924 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.32812 -39.57179 -37.19595 -36.03045 -34.70588 -31.87484 -31.33009 -30.16531 -28.99155 -27.89254 -25.63873 -23.86562 -23.77300 -22.70014 -21.91237 -20.13841 -19.99031 -18.44872 -17.38566 -16.91314 -16.55430 -16.27981 -15.90283 -15.61881 -15.33560 -15.00765 -14.57556 -14.35658 -14.21430 -14.04261 -13.92004 -13.46907 -13.25803 -13.00111 -12.86837 -12.75169 -12.37610 -12.34689 -12.19799 -11.99321 -11.86915 -11.67532 -11.45981 -11.35709 -11.04876 -10.94234 -10.76906 -10.32046 -9.56677 -9.30815 -8.32006 -6.15336 0.93086 1.03219 1.41072 1.59407 1.76876 2.25488 2.62344 2.65755 3.21091 3.50165 3.60937 3.70831 3.89703 4.15103 4.16522 4.26322 4.35556 4.37940 4.41635 4.49921 4.73883 4.78289 4.83368 4.84333 4.85551 4.90444 4.97535 5.05290 5.08649 5.14747 5.19588 5.30472 5.46149 5.47163 5.54983 5.58856 5.63809 5.73871 5.81675 6.01513 6.20456 6.46058 6.65730 6.87154 6.99737 7.20864 8.01252 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.026013 B = 0.004629 C = 0.004447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.146951 B = 6047.506562 C = 6294.225572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.078 4.078 3 C -0.145 4.145 4 C -0.116 4.116 5 H 0.094 0.906 6 C 0.048 3.952 7 O -0.394 6.394 8 C 0.030 3.970 9 C 0.130 3.870 10 H 0.081 0.919 11 N -0.730 5.730 12 C 0.111 3.889 13 C -0.142 4.142 14 C -0.192 4.192 15 C 0.038 3.962 16 C -0.576 4.576 17 H 0.041 0.959 18 C 0.024 3.976 19 N -0.837 5.837 20 Si 1.091 2.909 21 H -0.260 1.260 22 H -0.267 1.267 23 H -0.275 1.275 24 C -0.213 4.213 25 C -0.149 4.149 26 H 0.051 0.949 27 H 0.056 0.944 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.108 0.892 34 H 0.069 0.931 35 H 0.084 0.916 36 H 0.060 0.940 37 H 0.403 0.597 38 H 0.123 0.877 39 H 0.093 0.907 40 H 0.278 0.722 41 H 0.092 0.908 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.134 19.687 0.504 22.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.097 4.097 3 C -0.202 4.202 4 C -0.135 4.135 5 H 0.113 0.887 6 C -0.028 4.028 7 O -0.313 6.313 8 C -0.048 4.048 9 C 0.022 3.978 10 H 0.099 0.901 11 N -0.369 5.369 12 C 0.013 3.987 13 C -0.164 4.164 14 C -0.211 4.211 15 C 0.035 3.965 16 C -0.606 4.606 17 H 0.059 0.941 18 C -0.191 4.191 19 N -0.460 5.460 20 Si 0.911 3.089 21 H -0.185 1.185 22 H -0.192 1.192 23 H -0.201 1.201 24 C -0.233 4.233 25 C -0.171 4.171 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.084 0.916 29 H 0.088 0.912 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.127 0.873 34 H 0.087 0.913 35 H 0.103 0.897 36 H 0.079 0.921 37 H 0.242 0.758 38 H 0.141 0.859 39 H 0.111 0.889 40 H 0.088 0.912 41 H 0.110 0.890 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 10.638 19.591 2.261 22.407 hybrid contribution 0.242 -0.924 -2.315 2.505 sum 10.879 18.666 -0.054 21.606 Atomic orbital electron populations 1.22190 0.95107 1.03287 1.01660 1.20944 0.95862 0.96640 0.96262 1.21858 1.01419 0.94543 1.02406 1.22794 0.96297 0.93832 1.00613 0.88725 1.23666 0.93128 0.86008 0.99984 1.89111 1.56966 1.18197 1.67027 1.23996 0.89156 0.93411 0.98258 1.22046 0.92087 0.94689 0.88936 0.90136 1.44255 1.48378 1.30531 1.13699 1.17353 0.96235 0.91402 0.93751 1.20169 1.00086 0.99314 0.96843 1.20711 1.04077 0.97831 0.98519 1.17713 0.93564 0.92393 0.92851 1.20261 1.29971 1.15239 0.95142 0.94082 1.28095 0.91222 0.97919 1.01847 1.70652 1.37165 1.03879 1.34351 0.83419 0.77574 0.74389 0.73477 1.18515 1.19202 1.20094 1.20711 1.02768 1.01647 0.98172 1.20226 1.02265 0.97133 0.97512 0.92945 0.92530 0.91644 0.91173 0.92221 0.91694 0.92104 0.87349 0.91319 0.89734 0.92135 0.75768 0.85924 0.88912 0.91187 0.88967 0.86548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.13 8.55 71.98 0.62 -2.52 16 2 C -0.08 -1.23 1.84 -10.79 -0.02 -1.25 16 3 C -0.15 -1.72 8.94 71.98 0.64 -1.08 16 4 C -0.12 -2.07 2.68 -9.78 -0.03 -2.10 16 5 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 6 C 0.05 0.83 6.09 72.49 0.44 1.27 16 7 O -0.39 -9.65 11.65 -148.98 -1.74 -11.39 16 8 C 0.03 0.76 7.35 72.49 0.53 1.29 16 9 C 0.13 3.11 2.93 46.01 0.13 3.25 16 10 H 0.08 2.14 6.33 -2.39 -0.02 2.12 16 11 N -0.73 -19.54 2.95 -313.74 -0.92 -20.46 16 12 C 0.11 4.03 6.46 38.67 0.25 4.28 16 13 C -0.14 -5.51 9.82 22.15 0.22 -5.30 16 14 C -0.19 -8.99 9.74 22.47 0.22 -8.77 16 15 C 0.04 2.00 5.15 -21.27 -0.11 1.89 16 16 C -0.58 -33.33 9.28 23.38 0.22 -33.11 16 17 H 0.04 2.53 8.06 -2.91 -0.02 2.50 16 18 C 0.02 1.36 5.12 85.23 0.44 1.79 16 19 N -0.84 -47.76 13.66 21.82 0.30 -47.46 16 20 Si 1.09 49.95 25.83 68.60 1.77 51.72 16 21 H -0.26 -11.11 6.51 99.48 0.65 -10.46 16 22 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 23 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 24 C -0.21 -10.30 7.61 22.48 0.17 -10.13 16 25 C -0.15 -6.06 9.14 22.15 0.20 -5.85 16 26 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.06 1.60 5.35 -2.39 -0.01 1.59 16 29 H 0.07 1.12 6.56 -2.39 -0.02 1.10 16 30 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.06 0.65 7.03 -2.38 -0.02 0.63 16 32 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.07 1.06 7.56 -2.39 -0.02 1.04 16 35 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 36 H 0.06 1.53 8.06 -2.38 -0.02 1.52 16 37 H 0.40 9.33 5.34 -92.71 -0.50 8.84 16 38 H 0.12 3.93 8.06 -2.91 -0.02 3.91 16 39 H 0.09 4.27 8.06 -2.91 -0.02 4.25 16 40 H 0.28 15.77 8.73 -92.71 -0.81 14.96 16 41 H 0.09 4.55 5.12 -2.91 -0.01 4.54 16 42 H 0.12 4.15 6.15 -2.91 -0.02 4.13 16 Total: -1.00 -61.07 322.91 3.76 -57.32 By element: Atomic # 1 Polarization: 26.16 SS G_CDS: 0.42 Total: 26.58 kcal Atomic # 6 Polarization: -60.24 SS G_CDS: 3.92 Total: -56.32 kcal Atomic # 7 Polarization: -67.29 SS G_CDS: -0.63 Total: -67.92 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: -1.74 Total: -11.39 kcal Atomic # 14 Polarization: 49.95 SS G_CDS: 1.77 Total: 51.72 kcal Total: -61.07 3.76 -57.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699457105.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.343 kcal (2) G-P(sol) polarization free energy of solvation -61.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds