Wall clock time and date at job start Mon Mar 30 2020 07:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46995 * 2 1 4 4 H 1.09004 * 109.46740 * 54.89053 * 3 2 1 5 5 C 1.50697 * 109.47185 * 174.88617 * 3 2 1 6 6 H 1.07995 * 120.00165 * 119.99885 * 5 3 2 7 7 C 1.37885 * 119.99766 * 300.00322 * 5 3 2 8 8 N 1.31515 * 120.00071 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99658 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47326 * 90.00071 * 9 7 5 11 11 H 1.48504 * 109.46823 * 210.00013 * 9 7 5 12 12 H 1.48498 * 109.47124 * 329.99926 * 9 7 5 13 13 N 1.46892 * 109.47459 * 294.89081 * 3 2 1 14 14 C 1.46895 * 111.00334 * 154.15798 * 13 3 2 15 15 C 1.53003 * 109.47372 * 185.52348 * 14 13 3 16 16 H 1.09005 * 109.62901 * 305.00297 * 15 14 13 17 17 C 1.52960 * 109.63847 * 184.59718 * 15 14 13 18 18 C 1.50745 * 109.77339 * 191.14811 * 17 15 14 19 19 C 1.38594 * 118.76594 * 196.83391 * 18 17 15 20 20 C 1.38077 * 120.27669 * 180.13081 * 19 18 17 21 21 C 1.38261 * 119.85932 * 0.05219 * 20 19 18 22 22 C 1.38058 * 119.89833 * 359.89592 * 21 20 19 23 23 C 1.37909 * 121.34784 * 16.85126 * 18 17 15 24 24 C 1.50655 * 121.51326 * 359.68023 * 23 18 17 25 25 O 1.42650 * 110.39607 * 15.82700 * 24 23 18 26 26 H 1.09003 * 109.46824 * 177.55271 * 1 2 3 27 27 H 1.08999 * 109.47420 * 297.55300 * 1 2 3 28 28 H 1.09002 * 109.46881 * 57.55671 * 1 2 3 29 29 H 1.08995 * 109.46945 * 240.00308 * 2 1 3 30 30 H 1.08998 * 109.47108 * 120.00082 * 2 1 3 31 31 H 0.97001 * 119.99740 * 179.97438 * 8 7 5 32 32 H 1.00901 * 111.00022 * 278.11363 * 13 3 2 33 33 H 1.08994 * 109.47244 * 305.51923 * 14 13 3 34 34 H 1.09002 * 109.47328 * 65.52606 * 14 13 3 35 35 H 1.09003 * 109.42408 * 311.24340 * 17 15 14 36 36 H 1.09003 * 109.42240 * 71.05855 * 17 15 14 37 37 H 1.07999 * 119.86625 * 0.17745 * 19 18 17 38 38 H 1.07995 * 120.07098 * 180.02562 * 20 19 18 39 39 H 1.07998 * 120.04798 * 179.90810 * 21 20 19 40 40 H 1.07997 * 119.84740 * 180.02562 * 22 21 20 41 41 H 1.09000 * 109.33691 * 136.21573 * 24 23 18 42 42 H 1.08991 * 109.34050 * 255.89535 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6038 1.9820 0.8407 5 6 3.5416 1.4445 0.1266 6 1 4.1484 1.8885 -0.6486 7 6 4.1409 0.8792 1.2323 8 7 3.4021 0.3388 2.1766 9 14 6.0024 0.8810 1.3889 10 1 6.4389 2.1143 2.0915 11 1 6.4350 -0.3096 2.1639 12 1 6.6130 0.8396 0.0359 13 7 1.6537 2.0985 -1.2562 14 6 1.5551 3.5537 -1.0817 15 6 1.0195 4.1866 -2.3676 16 1 1.6469 3.8928 -3.2092 17 6 1.0231 5.7101 -2.2310 18 6 0.2512 6.3261 -3.3699 19 6 0.4217 7.6750 -3.6386 20 6 -0.2717 8.2719 -4.6728 21 6 -1.1405 7.5209 -5.4427 22 6 -1.3100 6.1769 -5.1764 23 6 -0.6127 5.5758 -4.1398 24 6 -0.8207 4.1057 -3.8844 25 8 -0.3255 3.7503 -2.5947 26 1 -0.3633 -1.0268 -0.0439 27 1 -0.3634 0.4754 0.9111 28 1 -0.3633 0.5513 -0.8673 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.8237 -0.0591 2.9543 32 1 2.2968 1.8661 -1.9982 33 1 0.8770 3.7757 -0.2578 34 1 2.5417 3.9608 -0.8601 35 1 0.5591 5.9903 -1.2853 36 1 2.0506 6.0734 -2.2511 37 1 1.1003 8.2616 -3.0372 38 1 -0.1361 9.3231 -4.8795 39 1 -1.6856 7.9850 -6.2514 40 1 -1.9886 5.5910 -5.7786 41 1 -1.8850 3.8770 -3.9390 42 1 -0.2882 3.5291 -4.6406 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700334386.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:45:39 Heat of formation + Delta-G solvation = -34.135349 kcal Electronic energy + Delta-G solvation = -21149.635515 eV Core-core repulsion = 18093.681526 eV Total energy + Delta-G solvation = -3055.953988 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.23490 -37.66880 -35.95889 -33.44853 -32.34949 -31.64612 -31.09605 -29.34616 -26.63268 -25.51737 -24.54550 -22.61392 -22.33747 -21.27912 -20.03958 -19.25444 -17.16097 -16.56244 -16.15763 -15.77138 -15.18592 -14.76343 -14.71925 -14.03697 -13.81370 -13.53802 -13.45648 -13.13842 -12.81113 -12.72884 -12.37980 -11.90506 -11.76878 -11.60951 -11.42388 -11.16354 -11.11900 -10.97343 -10.87418 -10.63888 -10.33336 -10.06960 -9.55036 -9.50841 -9.25615 -9.00710 -8.85033 -8.64405 -8.35734 -7.17918 -5.97654 -4.11369 1.22519 1.26059 3.26703 3.34321 3.36712 3.61525 4.05771 4.39719 4.59331 4.66585 4.79882 4.85536 5.03476 5.23860 5.28049 5.31029 5.41801 5.49145 5.53765 5.69913 5.72147 5.87747 5.89680 5.98562 6.08951 6.31098 6.34117 6.37985 6.48267 6.56793 6.57472 6.62694 6.82057 6.88697 7.19482 7.28985 7.45138 7.51884 7.64737 7.81256 8.13522 8.17471 8.37196 8.70495 9.02552 9.56232 11.01905 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.026619 B = 0.003879 C = 0.003495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.644981 B = 7216.282862 C = 8010.356813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.104 4.104 3 C 0.216 3.784 4 H 0.032 0.968 5 C -0.547 4.547 6 H 0.052 0.948 7 C 0.067 3.933 8 N -0.884 5.884 9 Si 0.888 3.112 10 H -0.282 1.282 11 H -0.286 1.286 12 H -0.275 1.275 13 N -0.681 5.681 14 C 0.075 3.925 15 C 0.096 3.904 16 H 0.056 0.944 17 C -0.113 4.113 18 C -0.066 4.066 19 C -0.120 4.120 20 C -0.122 4.122 21 C -0.127 4.127 22 C -0.114 4.114 23 C -0.116 4.116 24 C 0.098 3.902 25 O -0.349 6.349 26 H 0.022 0.978 27 H 0.034 0.966 28 H 0.053 0.947 29 H 0.029 0.971 30 H 0.089 0.911 31 H 0.261 0.739 32 H 0.325 0.675 33 H 0.070 0.930 34 H 0.043 0.957 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.122 0.878 38 H 0.120 0.880 39 H 0.120 0.880 40 H 0.122 0.878 41 H 0.101 0.899 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.518 12.295 -12.689 19.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.143 4.143 3 C 0.108 3.892 4 H 0.050 0.950 5 C -0.586 4.586 6 H 0.071 0.929 7 C -0.135 4.135 8 N -0.522 5.522 9 Si 0.716 3.284 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.200 1.200 13 N -0.310 5.310 14 C -0.055 4.055 15 C 0.037 3.963 16 H 0.074 0.926 17 C -0.150 4.150 18 C -0.066 4.066 19 C -0.138 4.138 20 C -0.140 4.140 21 C -0.145 4.145 22 C -0.132 4.132 23 C -0.117 4.117 24 C 0.021 3.979 25 O -0.267 6.267 26 H 0.042 0.958 27 H 0.054 0.946 28 H 0.072 0.928 29 H 0.048 0.952 30 H 0.107 0.893 31 H 0.071 0.929 32 H 0.140 0.860 33 H 0.088 0.912 34 H 0.061 0.939 35 H 0.106 0.894 36 H 0.102 0.898 37 H 0.140 0.860 38 H 0.138 0.862 39 H 0.138 0.862 40 H 0.140 0.860 41 H 0.119 0.881 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.294 11.971 -12.248 19.029 hybrid contribution 2.172 0.551 -0.045 2.241 sum -6.122 12.522 -12.293 18.585 Atomic orbital electron populations 1.21708 0.98903 0.98293 1.00637 1.21471 0.92223 0.99140 1.01462 1.19137 0.92616 0.91374 0.86098 0.95033 1.21890 0.92850 1.38350 1.05505 0.92931 1.24938 0.97852 0.94994 0.95735 1.69887 1.34770 1.38182 1.09359 0.86667 0.86137 0.77528 0.78063 1.20792 1.21158 1.20032 1.60803 1.54760 1.05445 1.09947 1.21772 0.98546 0.90833 0.94342 1.22242 0.83834 0.91025 0.99170 0.92551 1.21181 1.00135 0.96708 0.96996 1.19626 0.96706 0.93699 0.96593 1.21110 1.00255 0.94286 0.98124 1.21085 0.97187 0.99725 0.96025 1.21048 0.99220 0.94227 1.00023 1.20990 0.99706 0.95102 0.97420 1.20434 0.97336 0.97520 0.96361 1.21380 1.00231 0.89215 0.87067 1.88221 1.28809 1.77914 1.31740 0.95846 0.94641 0.92810 0.95223 0.89325 0.92891 0.85958 0.91162 0.93908 0.89440 0.89774 0.86023 0.86205 0.86194 0.86004 0.88148 0.92059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.96 9.83 37.16 0.37 -2.60 16 2 C -0.10 -2.55 5.45 -26.73 -0.15 -2.69 16 3 C 0.22 5.35 1.97 -68.87 -0.14 5.22 16 4 H 0.03 0.87 7.70 -51.93 -0.40 0.47 16 5 C -0.55 -14.64 8.47 -34.44 -0.29 -14.93 16 6 H 0.05 1.39 7.73 -52.49 -0.41 0.98 16 7 C 0.07 1.84 5.29 -17.82 -0.09 1.74 16 8 N -0.88 -24.99 11.29 55.43 0.63 -24.36 16 9 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 13 N -0.68 -14.38 5.59 -107.96 -0.60 -14.98 16 14 C 0.08 1.40 5.17 -3.83 -0.02 1.38 16 15 C 0.10 1.49 2.84 -26.75 -0.08 1.41 16 16 H 0.06 0.87 8.08 -51.93 -0.42 0.45 16 17 C -0.11 -1.50 5.33 -27.88 -0.15 -1.65 16 18 C -0.07 -0.85 5.78 -104.59 -0.60 -1.46 16 19 C -0.12 -1.34 9.67 -39.51 -0.38 -1.72 16 20 C -0.12 -1.22 10.05 -39.63 -0.40 -1.62 16 21 C -0.13 -1.24 10.05 -39.64 -0.40 -1.64 16 22 C -0.11 -1.21 9.67 -39.50 -0.38 -1.60 16 23 C -0.12 -1.47 5.80 -104.62 -0.61 -2.07 16 24 C 0.10 1.27 6.66 35.98 0.24 1.51 16 25 O -0.35 -5.76 10.41 -35.23 -0.37 -6.13 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.05 1.14 7.69 -51.93 -0.40 0.74 16 29 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.09 2.40 5.95 -51.93 -0.31 2.09 16 31 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 32 H 0.32 6.75 8.46 -39.29 -0.33 6.42 16 33 H 0.07 1.38 7.92 -51.93 -0.41 0.97 16 34 H 0.04 0.81 8.12 -51.93 -0.42 0.39 16 35 H 0.09 1.17 8.10 -51.93 -0.42 0.75 16 36 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 38 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 39 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 40 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 41 H 0.10 1.13 8.14 -51.93 -0.42 0.70 16 42 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 339.32 15.07 5.11 5.11 Total: -1.00 -29.01 339.32 -10.21 -39.22 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -6.88 Total: 5.87 kcal Atomic # 6 Polarization: -17.64 SS G_CDS: -3.08 Total: -20.72 kcal Atomic # 7 Polarization: -39.37 SS G_CDS: 0.02 Total: -39.34 kcal Atomic # 8 Polarization: -5.76 SS G_CDS: -0.37 Total: -6.13 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.01 -10.21 -39.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700334386.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.088 kcal (2) G-P(sol) polarization free energy of solvation -29.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds