Wall clock time and date at job start Mon Mar 30 2020 07:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46995 * 2 1 4 4 H 1.09004 * 109.46740 * 54.89053 * 3 2 1 5 5 C 1.50697 * 109.47185 * 174.88617 * 3 2 1 6 6 H 1.07995 * 120.00165 * 119.99885 * 5 3 2 7 7 C 1.37885 * 119.99766 * 300.00322 * 5 3 2 8 8 N 1.31515 * 120.00071 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99658 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47326 * 90.00071 * 9 7 5 11 11 H 1.48504 * 109.46823 * 210.00013 * 9 7 5 12 12 H 1.48498 * 109.47124 * 329.99926 * 9 7 5 13 13 N 1.46892 * 109.47459 * 294.89081 * 3 2 1 14 14 C 1.46895 * 111.00334 * 154.15798 * 13 3 2 15 15 C 1.53003 * 109.47372 * 185.52348 * 14 13 3 16 16 H 1.09005 * 109.62901 * 305.00297 * 15 14 13 17 17 C 1.52960 * 109.63847 * 184.59718 * 15 14 13 18 18 C 1.50745 * 109.77339 * 191.14811 * 17 15 14 19 19 C 1.38594 * 118.76594 * 196.83391 * 18 17 15 20 20 C 1.38077 * 120.27669 * 180.13081 * 19 18 17 21 21 C 1.38261 * 119.85932 * 0.05219 * 20 19 18 22 22 C 1.38058 * 119.89833 * 359.89592 * 21 20 19 23 23 C 1.37909 * 121.34784 * 16.85126 * 18 17 15 24 24 C 1.50655 * 121.51326 * 359.68023 * 23 18 17 25 25 O 1.42650 * 110.39607 * 15.82700 * 24 23 18 26 26 H 1.09003 * 109.46824 * 177.55271 * 1 2 3 27 27 H 1.08999 * 109.47420 * 297.55300 * 1 2 3 28 28 H 1.09002 * 109.46881 * 57.55671 * 1 2 3 29 29 H 1.08995 * 109.46945 * 240.00308 * 2 1 3 30 30 H 1.08998 * 109.47108 * 120.00082 * 2 1 3 31 31 H 0.97001 * 119.99740 * 179.97438 * 8 7 5 32 32 H 1.00901 * 111.00022 * 278.11363 * 13 3 2 33 33 H 1.08994 * 109.47244 * 305.51923 * 14 13 3 34 34 H 1.09002 * 109.47328 * 65.52606 * 14 13 3 35 35 H 1.09003 * 109.42408 * 311.24340 * 17 15 14 36 36 H 1.09003 * 109.42240 * 71.05855 * 17 15 14 37 37 H 1.07999 * 119.86625 * 0.17745 * 19 18 17 38 38 H 1.07995 * 120.07098 * 180.02562 * 20 19 18 39 39 H 1.07998 * 120.04798 * 179.90810 * 21 20 19 40 40 H 1.07997 * 119.84740 * 180.02562 * 22 21 20 41 41 H 1.09000 * 109.33691 * 136.21573 * 24 23 18 42 42 H 1.08991 * 109.34050 * 255.89535 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6038 1.9820 0.8407 5 6 3.5416 1.4445 0.1266 6 1 4.1484 1.8885 -0.6486 7 6 4.1409 0.8792 1.2323 8 7 3.4021 0.3388 2.1766 9 14 6.0024 0.8810 1.3889 10 1 6.4389 2.1143 2.0915 11 1 6.4350 -0.3096 2.1639 12 1 6.6130 0.8396 0.0359 13 7 1.6537 2.0985 -1.2562 14 6 1.5551 3.5537 -1.0817 15 6 1.0195 4.1866 -2.3676 16 1 1.6469 3.8928 -3.2092 17 6 1.0231 5.7101 -2.2310 18 6 0.2512 6.3261 -3.3699 19 6 0.4217 7.6750 -3.6386 20 6 -0.2717 8.2719 -4.6728 21 6 -1.1405 7.5209 -5.4427 22 6 -1.3100 6.1769 -5.1764 23 6 -0.6127 5.5758 -4.1398 24 6 -0.8207 4.1057 -3.8844 25 8 -0.3255 3.7503 -2.5947 26 1 -0.3633 -1.0268 -0.0439 27 1 -0.3634 0.4754 0.9111 28 1 -0.3633 0.5513 -0.8673 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.8237 -0.0591 2.9543 32 1 2.2968 1.8661 -1.9982 33 1 0.8770 3.7757 -0.2578 34 1 2.5417 3.9608 -0.8601 35 1 0.5591 5.9903 -1.2853 36 1 2.0506 6.0734 -2.2511 37 1 1.1003 8.2616 -3.0372 38 1 -0.1361 9.3231 -4.8795 39 1 -1.6856 7.9850 -6.2514 40 1 -1.9886 5.5910 -5.7786 41 1 -1.8850 3.8770 -3.9390 42 1 -0.2882 3.5291 -4.6406 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700334386.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:45:39 Heat of formation + Delta-G solvation = -50.416204 kcal Electronic energy + Delta-G solvation = -21150.341506 eV Core-core repulsion = 18093.681526 eV Total energy + Delta-G solvation = -3056.659979 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.19961 -38.80213 -37.69223 -34.86760 -33.87304 -32.95742 -32.42115 -30.61855 -28.39389 -26.57659 -25.97464 -24.37553 -23.25618 -22.56380 -21.50621 -20.75486 -18.77155 -18.01416 -17.13687 -16.93506 -16.64583 -16.29007 -15.63839 -15.54614 -15.24050 -14.96461 -14.54630 -14.48556 -14.08002 -14.00773 -13.89372 -13.31105 -13.19230 -12.96266 -12.87835 -12.77733 -12.62416 -12.50963 -12.38271 -12.07093 -11.86838 -11.65458 -11.49518 -11.20811 -11.00471 -10.46351 -10.44973 -9.67488 -9.50452 -9.00294 -8.03610 -6.27077 0.39782 0.45096 1.39191 1.40966 1.50227 2.41012 2.78836 2.91175 3.15185 3.44819 3.77633 3.81054 4.01005 4.12550 4.18572 4.27403 4.41603 4.47338 4.51751 4.58751 4.66010 4.71547 4.76159 4.79271 4.83796 4.89814 4.96499 5.05811 5.10914 5.18997 5.20197 5.44590 5.52937 5.53375 5.60041 5.64718 5.67852 5.79546 6.09865 6.11503 6.20705 6.32141 6.40390 6.83718 7.03618 7.44691 8.92556 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.026619 B = 0.003879 C = 0.003495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.644981 B = 7216.282862 C = 8010.356813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.101 4.101 3 C 0.223 3.777 4 H -0.003 1.003 5 C -0.561 4.561 6 H 0.053 0.947 7 C 0.019 3.981 8 N -0.912 5.912 9 Si 0.953 3.047 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.269 1.269 13 N -0.675 5.675 14 C 0.079 3.921 15 C 0.106 3.894 16 H 0.059 0.941 17 C -0.106 4.106 18 C -0.090 4.090 19 C -0.129 4.129 20 C -0.124 4.124 21 C -0.127 4.127 22 C -0.119 4.119 23 C -0.135 4.135 24 C 0.095 3.905 25 O -0.377 6.377 26 H 0.045 0.955 27 H 0.027 0.973 28 H 0.056 0.944 29 H 0.028 0.972 30 H 0.061 0.939 31 H 0.262 0.738 32 H 0.328 0.672 33 H 0.053 0.947 34 H 0.038 0.962 35 H 0.080 0.920 36 H 0.095 0.905 37 H 0.134 0.866 38 H 0.146 0.854 39 H 0.148 0.852 40 H 0.143 0.857 41 H 0.115 0.885 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.629 13.606 -14.585 21.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.139 4.139 3 C 0.114 3.886 4 H 0.015 0.985 5 C -0.600 4.600 6 H 0.071 0.929 7 C -0.181 4.181 8 N -0.550 5.550 9 Si 0.778 3.222 10 H -0.203 1.203 11 H -0.209 1.209 12 H -0.194 1.194 13 N -0.304 5.304 14 C -0.051 4.051 15 C 0.048 3.952 16 H 0.077 0.923 17 C -0.144 4.144 18 C -0.090 4.090 19 C -0.147 4.147 20 C -0.142 4.142 21 C -0.145 4.145 22 C -0.136 4.136 23 C -0.136 4.136 24 C 0.019 3.981 25 O -0.296 6.296 26 H 0.064 0.936 27 H 0.046 0.954 28 H 0.076 0.924 29 H 0.047 0.953 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.144 0.856 33 H 0.072 0.928 34 H 0.056 0.944 35 H 0.098 0.902 36 H 0.113 0.887 37 H 0.152 0.848 38 H 0.164 0.836 39 H 0.166 0.834 40 H 0.161 0.839 41 H 0.133 0.867 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -8.412 13.295 -14.162 21.168 hybrid contribution 2.142 0.188 0.500 2.207 sum -6.270 13.483 -13.663 20.194 Atomic orbital electron populations 1.21556 0.96627 0.99690 1.00345 1.21343 0.94229 0.98424 0.99945 1.18909 0.91658 0.91557 0.86475 0.98534 1.22188 0.93938 1.38238 1.05627 0.92926 1.25698 1.02226 0.94707 0.95478 1.70021 1.36480 1.38770 1.09772 0.85648 0.80846 0.77506 0.78158 1.20349 1.20918 1.19367 1.60724 1.54356 1.06942 1.08332 1.21747 0.98126 0.89411 0.95838 1.22020 0.83761 0.92275 0.97166 0.92303 1.21072 1.01057 0.94900 0.97333 1.19683 0.97635 0.94733 0.96949 1.21321 1.00799 0.93751 0.98838 1.21455 0.96421 1.01081 0.95201 1.21447 0.98794 0.93892 1.00351 1.21269 0.99557 0.95880 0.96933 1.20503 0.98298 0.97226 0.97527 1.21552 1.00991 0.90020 0.85537 1.88152 1.28929 1.78590 1.33891 0.93628 0.95407 0.92450 0.95295 0.92098 0.92892 0.85581 0.92798 0.94412 0.90159 0.88665 0.84791 0.83635 0.83387 0.83914 0.86671 0.91501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.35 9.83 71.98 0.71 -4.64 16 2 C -0.10 -5.00 5.45 30.60 0.17 -4.83 16 3 C 0.22 11.37 1.97 44.17 0.09 11.46 16 4 H 0.00 -0.19 7.70 -2.38 -0.02 -0.21 16 5 C -0.56 -30.48 8.47 25.60 0.22 -30.27 16 6 H 0.05 2.79 7.73 -2.91 -0.02 2.77 16 7 C 0.02 1.04 5.29 84.66 0.45 1.49 16 8 N -0.91 -52.57 11.29 21.45 0.24 -52.33 16 9 Si 0.95 43.29 29.54 68.60 2.03 45.31 16 10 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 11 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 12 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 13 N -0.67 -29.02 5.59 -495.47 -2.77 -31.79 16 14 C 0.08 3.01 5.17 86.31 0.45 3.46 16 15 C 0.11 3.32 2.84 30.58 0.09 3.40 16 16 H 0.06 1.80 8.08 -2.38 -0.02 1.78 16 17 C -0.11 -2.81 5.33 29.85 0.16 -2.65 16 18 C -0.09 -2.23 5.78 -19.84 -0.11 -2.35 16 19 C -0.13 -2.67 9.67 22.32 0.22 -2.45 16 20 C -0.12 -2.11 10.05 22.24 0.22 -1.89 16 21 C -0.13 -2.08 10.05 22.23 0.22 -1.86 16 22 C -0.12 -2.23 9.67 22.32 0.22 -2.02 16 23 C -0.14 -3.23 5.80 -19.86 -0.12 -3.35 16 24 C 0.10 2.39 6.66 71.22 0.47 2.86 16 25 O -0.38 -12.45 10.41 -148.98 -1.55 -14.00 16 26 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.06 2.40 7.69 -2.39 -0.02 2.38 16 29 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.06 3.38 5.95 -2.39 -0.01 3.36 16 31 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 32 H 0.33 13.74 8.46 -89.69 -0.76 12.98 16 33 H 0.05 2.21 7.92 -2.39 -0.02 2.19 16 34 H 0.04 1.47 8.12 -2.39 -0.02 1.45 16 35 H 0.08 2.19 8.10 -2.39 -0.02 2.17 16 36 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 37 H 0.13 2.30 8.06 -2.91 -0.02 2.28 16 38 H 0.15 1.68 8.06 -2.91 -0.02 1.65 16 39 H 0.15 1.55 8.06 -2.91 -0.02 1.52 16 40 H 0.14 1.98 8.06 -2.91 -0.02 1.95 16 41 H 0.12 2.44 8.14 -2.39 -0.02 2.42 16 42 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -62.55 339.32 1.62 -60.93 By element: Atomic # 1 Polarization: 25.27 SS G_CDS: 0.23 Total: 25.50 kcal Atomic # 6 Polarization: -37.07 SS G_CDS: 3.44 Total: -33.63 kcal Atomic # 7 Polarization: -81.59 SS G_CDS: -2.53 Total: -84.12 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: -1.55 Total: -14.00 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.31 kcal Total: -62.55 1.62 -60.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700334386.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.517 kcal (2) G-P(sol) polarization free energy of solvation -62.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds