Wall clock time and date at job start Mon Mar 30 2020 07:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53008 * 109.47041 * 2 1 4 4 C 1.53004 * 109.47234 * 180.02562 * 3 2 1 5 5 H 1.09005 * 110.79617 * 302.82693 * 4 3 2 6 6 C 1.54991 * 110.90999 * 66.44910 * 4 3 2 7 7 O 1.44378 * 103.49033 * 155.22444 * 6 4 3 8 8 C 1.43750 * 106.97472 * 319.93826 * 7 6 4 9 9 C 1.54100 * 107.29233 * 26.51513 * 8 7 6 10 10 H 1.08998 * 110.48897 * 116.63930 * 9 8 7 11 11 N 1.46499 * 110.48800 * 239.29113 * 9 8 7 12 12 C 1.39678 * 120.00037 * 269.76476 * 11 9 8 13 13 C 1.39338 * 119.95034 * 359.72968 * 12 11 9 14 14 C 1.38481 * 120.42212 * 179.71750 * 13 12 11 15 15 C 1.37696 * 120.32372 * 0.55613 * 14 13 12 16 16 C 1.40747 * 119.89082 * 359.72378 * 15 14 13 17 17 C 1.41408 * 120.20251 * 180.02562 * 16 15 14 18 18 H 1.08002 * 119.99892 * 150.18618 * 17 16 15 19 19 C 1.39926 * 120.00068 * 330.18186 * 17 16 15 20 20 N 1.30828 * 120.00274 * 161.73884 * 19 17 16 21 21 Si 1.86805 * 119.99912 * 341.73491 * 19 17 16 22 22 H 1.48504 * 109.46966 * 95.41667 * 21 19 17 23 23 H 1.48502 * 109.47055 * 215.41169 * 21 19 17 24 24 H 1.48495 * 109.47336 * 335.41578 * 21 19 17 25 25 C 1.38276 * 119.95419 * 180.02562 * 12 11 9 26 26 H 1.09002 * 109.47594 * 59.99879 * 1 2 3 27 27 H 1.09004 * 109.47148 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47565 * 300.00001 * 1 2 3 29 29 H 1.09005 * 109.47514 * 240.00421 * 2 1 3 30 30 H 1.09000 * 109.47514 * 119.99590 * 2 1 3 31 31 H 1.08998 * 109.47230 * 60.00082 * 3 2 1 32 32 H 1.09008 * 109.46667 * 299.99867 * 3 2 1 33 33 H 1.09002 * 110.61792 * 36.72423 * 6 4 3 34 34 H 1.08994 * 110.75694 * 273.79287 * 6 4 3 35 35 H 1.08996 * 109.87622 * 145.93702 * 8 7 6 36 36 H 1.08994 * 109.87819 * 267.09186 * 8 7 6 37 37 H 0.97001 * 119.99520 * 89.77112 * 11 9 8 38 38 H 1.08000 * 119.78823 * 359.97438 * 13 12 11 39 39 H 1.08000 * 119.83767 * 180.27315 * 14 13 12 40 40 H 1.07997 * 120.04745 * 179.70128 * 15 14 13 41 41 H 0.96999 * 120.00362 * 179.97438 * 20 19 17 42 42 H 1.08004 * 120.15921 * 0.02562 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9574 0.8901 0.8554 6 6 4.1226 0.8643 -1.3282 7 8 5.4335 1.4598 -1.4351 8 6 5.3113 2.8244 -1.0001 9 6 4.1224 2.8887 -0.0219 10 1 4.4611 3.1822 0.9716 11 7 3.1036 3.8196 -0.5135 12 6 3.1541 5.1668 -0.1482 13 6 4.1706 5.6231 0.6884 14 6 4.2334 6.9579 1.0520 15 6 3.2844 7.8471 0.5995 16 6 2.2483 7.3995 -0.2415 17 6 1.2706 8.3071 -0.7105 18 1 0.7957 8.1428 -1.6665 19 6 0.9183 9.4179 0.0640 20 7 0.3045 10.4326 -0.4885 21 14 1.3242 9.4520 1.8871 22 1 2.6074 10.1698 2.0952 23 1 0.2405 10.1521 2.6225 24 1 1.4473 8.0613 2.3929 25 6 2.1917 6.0446 -0.6124 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6765 1.9564 -0.8901 33 1 3.4954 1.1638 -2.1679 34 1 4.1975 -0.2217 -1.2749 35 1 6.2251 3.1352 -0.4937 36 1 5.1217 3.4710 -1.8569 37 1 2.3940 3.5003 -1.0927 38 1 4.9167 4.9322 1.0522 39 1 5.0279 7.3022 1.6974 40 1 3.3349 8.8861 0.8898 41 1 0.0600 11.2025 0.0485 42 1 1.4003 5.6909 -1.2567 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710906628.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:07 Heat of formation + Delta-G solvation = -36.899930 kcal Electronic energy + Delta-G solvation = -21288.934546 eV Core-core repulsion = 18232.860677 eV Total energy + Delta-G solvation = -3056.073870 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.02937 -37.82817 -35.69287 -34.67829 -33.18716 -31.14161 -30.21703 -29.23001 -27.02297 -26.09452 -25.07587 -23.00935 -21.66794 -21.16612 -20.69548 -19.37425 -17.68612 -16.55170 -16.14155 -15.79645 -15.55368 -15.07070 -14.76181 -14.50442 -14.36928 -13.69968 -13.43226 -12.99775 -12.87105 -12.68308 -12.43480 -12.38942 -12.15988 -11.77262 -11.68111 -11.47802 -11.20934 -10.99623 -10.85853 -10.71479 -10.63686 -10.43669 -10.41529 -9.76396 -9.68549 -9.51033 -9.28314 -8.91918 -7.61190 -6.89281 -6.51185 -4.45500 2.68611 2.89316 3.17497 3.27477 3.38990 3.79632 4.05211 4.08012 4.40694 4.58494 4.59164 4.76794 4.93055 5.01676 5.14578 5.20544 5.30949 5.44269 5.52368 5.57723 5.61178 5.69153 5.73053 5.82971 5.90957 5.97852 6.02950 6.04283 6.13548 6.20367 6.31513 6.56569 6.75727 6.78545 6.87661 6.98751 7.30222 7.55114 7.67097 7.78418 7.98701 8.33303 8.39077 8.48742 8.76758 8.90386 10.13566 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.021288 B = 0.004520 C = 0.004060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.975303 B = 6193.235106 C = 6894.356692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.124 4.124 3 C -0.106 4.106 4 C -0.130 4.130 5 H 0.091 0.909 6 C 0.052 3.948 7 O -0.382 6.382 8 C 0.029 3.971 9 C 0.131 3.869 10 H 0.093 0.907 11 N -0.748 5.748 12 C 0.234 3.766 13 C -0.302 4.302 14 C -0.048 4.048 15 C -0.271 4.271 16 C 0.126 3.874 17 C -0.451 4.451 18 H 0.088 0.912 19 C 0.086 3.914 20 N -0.813 5.813 21 Si 0.915 3.085 22 H -0.272 1.272 23 H -0.294 1.294 24 H -0.245 1.245 25 C -0.276 4.276 26 H 0.055 0.945 27 H 0.051 0.949 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.059 0.941 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.067 0.933 37 H 0.392 0.608 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.097 0.903 41 H 0.284 0.716 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.492 -16.821 2.201 17.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.144 4.144 4 C -0.149 4.149 5 H 0.109 0.891 6 C -0.025 4.025 7 O -0.301 6.301 8 C -0.049 4.049 9 C 0.023 3.977 10 H 0.111 0.889 11 N -0.383 5.383 12 C 0.135 3.865 13 C -0.325 4.325 14 C -0.066 4.066 15 C -0.291 4.291 16 C 0.122 3.878 17 C -0.480 4.480 18 H 0.106 0.894 19 C -0.132 4.132 20 N -0.437 5.437 21 Si 0.742 3.258 22 H -0.198 1.198 23 H -0.222 1.222 24 H -0.168 1.168 25 C -0.300 4.300 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.107 0.893 35 H 0.103 0.897 36 H 0.085 0.915 37 H 0.228 0.772 38 H 0.110 0.890 39 H 0.110 0.890 40 H 0.114 0.886 41 H 0.094 0.906 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 3.684 -16.724 2.179 17.263 hybrid contribution -0.297 0.293 0.580 0.715 sum 3.386 -16.431 2.759 17.002 Atomic orbital electron populations 1.21776 0.95759 1.01399 1.02172 1.21564 0.96028 0.96778 1.01823 1.21490 0.93135 0.96659 1.03088 1.23015 0.96779 0.95972 0.99151 0.89076 1.23606 0.84541 0.98331 0.96018 1.88848 1.28909 1.24798 1.87511 1.23905 0.99392 0.83449 0.98178 1.21991 0.88670 0.88796 0.98199 0.88867 1.44644 1.31144 1.05694 1.56812 1.17545 0.93792 0.82344 0.92830 1.19916 1.04148 0.95921 1.12496 1.20370 0.96593 0.92993 0.96693 1.20905 0.99681 0.98178 1.10315 1.17438 0.90793 0.91028 0.88535 1.19455 1.18947 1.03870 1.05706 0.89411 1.26139 0.92276 0.93207 1.01623 1.69707 1.30991 1.04476 1.38548 0.86269 0.77160 0.80604 0.81776 1.19787 1.22208 1.16776 1.20385 1.02808 0.93030 1.13760 0.92615 0.92949 0.92592 0.92124 0.92074 0.90870 0.91573 0.92302 0.89267 0.89740 0.91456 0.77204 0.89028 0.89045 0.88567 0.90599 0.88593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.91 37.15 0.37 -0.92 16 2 C -0.12 -1.05 5.78 -26.73 -0.15 -1.20 16 3 C -0.11 -1.08 3.94 -26.73 -0.11 -1.18 16 4 C -0.13 -1.39 3.13 -88.61 -0.28 -1.66 16 5 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 6 C 0.05 0.56 6.36 38.21 0.24 0.80 16 7 O -0.38 -5.21 11.52 -35.23 -0.41 -5.62 16 8 C 0.03 0.40 7.50 37.73 0.28 0.68 16 9 C 0.13 1.76 3.01 -66.40 -0.20 1.56 16 10 H 0.09 1.30 6.38 -51.93 -0.33 0.97 16 11 N -0.75 -11.84 4.60 -50.74 -0.23 -12.08 16 12 C 0.23 4.75 6.64 -83.86 -0.56 4.19 16 13 C -0.30 -6.18 9.23 -39.08 -0.36 -6.54 16 14 C -0.05 -1.04 10.02 -39.69 -0.40 -1.44 16 15 C -0.27 -6.63 7.17 -38.83 -0.28 -6.91 16 16 C 0.13 3.23 5.10 -106.85 -0.55 2.68 16 17 C -0.45 -12.39 9.57 -37.74 -0.36 -12.75 16 18 H 0.09 2.52 8.06 -52.49 -0.42 2.10 16 19 C 0.09 2.29 5.40 -17.35 -0.09 2.20 16 20 N -0.81 -22.00 13.93 55.55 0.77 -21.23 16 21 Si 0.91 21.29 24.52 -169.99 -4.17 17.12 16 22 H -0.27 -6.16 6.71 56.52 0.38 -5.78 16 23 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.24 -5.84 6.86 56.52 0.39 -5.46 16 25 C -0.28 -6.40 9.63 -38.68 -0.37 -6.77 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.47 7.46 -51.93 -0.39 0.08 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.07 0.70 6.25 -51.92 -0.32 0.38 16 33 H 0.06 0.63 8.02 -51.93 -0.42 0.21 16 34 H 0.09 0.79 8.08 -51.93 -0.42 0.38 16 35 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.07 1.02 7.93 -51.93 -0.41 0.61 16 37 H 0.39 5.75 6.44 -40.82 -0.26 5.49 16 38 H 0.09 1.65 6.17 -52.49 -0.32 1.33 16 39 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 40 H 0.10 2.37 4.73 -52.49 -0.25 2.12 16 41 H 0.28 6.96 8.30 -40.82 -0.34 6.62 16 42 H 0.10 2.13 8.06 -52.48 -0.42 1.71 16 LS Contribution 328.57 15.07 4.95 4.95 Total: -1.00 -28.07 328.57 -8.42 -36.48 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -6.52 Total: 7.62 kcal Atomic # 6 Polarization: -24.45 SS G_CDS: -2.81 Total: -27.26 kcal Atomic # 7 Polarization: -33.85 SS G_CDS: 0.54 Total: -33.31 kcal Atomic # 8 Polarization: -5.21 SS G_CDS: -0.41 Total: -5.62 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.17 Total: 17.12 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -28.07 -8.42 -36.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710906628.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.415 kcal (2) G-P(sol) polarization free energy of solvation -28.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds