Wall clock time and date at job start Mon Mar 30 2020 07:20:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53008 * 109.47041 * 2 1 4 4 C 1.53004 * 109.47234 * 180.02562 * 3 2 1 5 5 H 1.09005 * 110.79617 * 302.82693 * 4 3 2 6 6 C 1.54991 * 110.90999 * 66.44910 * 4 3 2 7 7 O 1.44378 * 103.49033 * 155.22444 * 6 4 3 8 8 C 1.43750 * 106.97472 * 319.93826 * 7 6 4 9 9 C 1.54100 * 107.29233 * 26.51513 * 8 7 6 10 10 H 1.08998 * 110.48897 * 116.63930 * 9 8 7 11 11 N 1.46499 * 110.48800 * 239.29113 * 9 8 7 12 12 C 1.39678 * 120.00037 * 269.76476 * 11 9 8 13 13 C 1.39338 * 119.95034 * 359.72968 * 12 11 9 14 14 C 1.38481 * 120.42212 * 179.71750 * 13 12 11 15 15 C 1.37696 * 120.32372 * 0.55613 * 14 13 12 16 16 C 1.40747 * 119.89082 * 359.72378 * 15 14 13 17 17 C 1.41408 * 120.20251 * 180.02562 * 16 15 14 18 18 H 1.08002 * 119.99892 * 150.18618 * 17 16 15 19 19 C 1.39926 * 120.00068 * 330.18186 * 17 16 15 20 20 N 1.30828 * 120.00274 * 161.73884 * 19 17 16 21 21 Si 1.86805 * 119.99912 * 341.73491 * 19 17 16 22 22 H 1.48504 * 109.46966 * 95.41667 * 21 19 17 23 23 H 1.48502 * 109.47055 * 215.41169 * 21 19 17 24 24 H 1.48495 * 109.47336 * 335.41578 * 21 19 17 25 25 C 1.38276 * 119.95419 * 180.02562 * 12 11 9 26 26 H 1.09002 * 109.47594 * 59.99879 * 1 2 3 27 27 H 1.09004 * 109.47148 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47565 * 300.00001 * 1 2 3 29 29 H 1.09005 * 109.47514 * 240.00421 * 2 1 3 30 30 H 1.09000 * 109.47514 * 119.99590 * 2 1 3 31 31 H 1.08998 * 109.47230 * 60.00082 * 3 2 1 32 32 H 1.09008 * 109.46667 * 299.99867 * 3 2 1 33 33 H 1.09002 * 110.61792 * 36.72423 * 6 4 3 34 34 H 1.08994 * 110.75694 * 273.79287 * 6 4 3 35 35 H 1.08996 * 109.87622 * 145.93702 * 8 7 6 36 36 H 1.08994 * 109.87819 * 267.09186 * 8 7 6 37 37 H 0.97001 * 119.99520 * 89.77112 * 11 9 8 38 38 H 1.08000 * 119.78823 * 359.97438 * 13 12 11 39 39 H 1.08000 * 119.83767 * 180.27315 * 14 13 12 40 40 H 1.07997 * 120.04745 * 179.70128 * 15 14 13 41 41 H 0.96999 * 120.00362 * 179.97438 * 20 19 17 42 42 H 1.08004 * 120.15921 * 0.02562 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9574 0.8901 0.8554 6 6 4.1226 0.8643 -1.3282 7 8 5.4335 1.4598 -1.4351 8 6 5.3113 2.8244 -1.0001 9 6 4.1224 2.8887 -0.0219 10 1 4.4611 3.1822 0.9716 11 7 3.1036 3.8196 -0.5135 12 6 3.1541 5.1668 -0.1482 13 6 4.1706 5.6231 0.6884 14 6 4.2334 6.9579 1.0520 15 6 3.2844 7.8471 0.5995 16 6 2.2483 7.3995 -0.2415 17 6 1.2706 8.3071 -0.7105 18 1 0.7957 8.1428 -1.6665 19 6 0.9183 9.4179 0.0640 20 7 0.3045 10.4326 -0.4885 21 14 1.3242 9.4520 1.8871 22 1 2.6074 10.1698 2.0952 23 1 0.2405 10.1521 2.6225 24 1 1.4473 8.0613 2.3929 25 6 2.1917 6.0446 -0.6124 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6765 1.9564 -0.8901 33 1 3.4954 1.1638 -2.1679 34 1 4.1975 -0.2217 -1.2749 35 1 6.2251 3.1352 -0.4937 36 1 5.1217 3.4710 -1.8569 37 1 2.3940 3.5003 -1.0927 38 1 4.9167 4.9322 1.0522 39 1 5.0279 7.3022 1.6974 40 1 3.3349 8.8861 0.8898 41 1 0.0600 11.2025 0.0485 42 1 1.4003 5.6909 -1.2567 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710906628.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:06 Heat of formation + Delta-G solvation = -53.115502 kcal Electronic energy + Delta-G solvation = -21289.637706 eV Core-core repulsion = 18232.860677 eV Total energy + Delta-G solvation = -3056.777030 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.11445 -39.48448 -36.75123 -36.01979 -34.92907 -32.25304 -32.03783 -30.41303 -28.47737 -27.05233 -26.82599 -23.97571 -22.97136 -22.74363 -21.91728 -20.64134 -19.34863 -17.97654 -17.47381 -17.15778 -16.62300 -16.41449 -16.27140 -15.84882 -15.51553 -15.03680 -14.55281 -14.46582 -14.26743 -14.06159 -13.78046 -13.62512 -13.39584 -13.11676 -13.00011 -12.82101 -12.54598 -12.42311 -12.19949 -11.92932 -11.74120 -11.60967 -11.50100 -11.40890 -11.22199 -11.08276 -10.70004 -10.56689 -9.47169 -8.86915 -8.10449 -6.49445 0.86711 1.09717 1.29918 1.44499 1.53286 2.17159 2.56867 2.67631 3.03006 3.45314 3.61955 3.74552 3.85312 4.16852 4.20742 4.22875 4.33020 4.37268 4.40250 4.60231 4.66793 4.72817 4.74647 4.77712 4.85224 4.92395 4.96160 5.00716 5.05738 5.11243 5.11807 5.20700 5.28399 5.38355 5.47623 5.54751 5.74355 5.85027 5.88136 6.00773 6.10780 6.39625 6.69659 6.82862 6.88459 7.06475 8.22145 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.021288 B = 0.004520 C = 0.004060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.975303 B = 6193.235106 C = 6894.356692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.119 4.119 3 C -0.103 4.103 4 C -0.118 4.118 5 H 0.109 0.891 6 C 0.049 3.951 7 O -0.395 6.395 8 C 0.033 3.967 9 C 0.125 3.875 10 H 0.097 0.903 11 N -0.737 5.737 12 C 0.245 3.755 13 C -0.289 4.289 14 C -0.048 4.048 15 C -0.293 4.293 16 C 0.107 3.893 17 C -0.490 4.490 18 H 0.051 0.949 19 C 0.049 3.951 20 N -0.855 5.855 21 Si 0.972 3.028 22 H -0.260 1.260 23 H -0.281 1.281 24 H -0.254 1.254 25 C -0.294 4.294 26 H 0.049 0.951 27 H 0.063 0.937 28 H 0.047 0.953 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.114 0.886 35 H 0.095 0.905 36 H 0.048 0.952 37 H 0.398 0.602 38 H 0.126 0.874 39 H 0.125 0.875 40 H 0.090 0.910 41 H 0.292 0.708 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.396 -19.630 4.001 20.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.157 4.157 3 C -0.141 4.141 4 C -0.137 4.137 5 H 0.127 0.873 6 C -0.027 4.027 7 O -0.314 6.314 8 C -0.046 4.046 9 C 0.018 3.982 10 H 0.115 0.885 11 N -0.370 5.370 12 C 0.143 3.857 13 C -0.311 4.311 14 C -0.066 4.066 15 C -0.314 4.314 16 C 0.104 3.896 17 C -0.520 4.520 18 H 0.069 0.931 19 C -0.165 4.165 20 N -0.482 5.482 21 Si 0.796 3.204 22 H -0.185 1.185 23 H -0.208 1.208 24 H -0.178 1.178 25 C -0.318 4.318 26 H 0.068 0.932 27 H 0.082 0.918 28 H 0.067 0.933 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.132 0.868 35 H 0.113 0.887 36 H 0.067 0.933 37 H 0.235 0.765 38 H 0.144 0.856 39 H 0.143 0.857 40 H 0.108 0.892 41 H 0.102 0.898 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 5.591 -19.578 3.960 20.742 hybrid contribution -0.770 0.882 -0.057 1.172 sum 4.821 -18.696 3.903 19.698 Atomic orbital electron populations 1.21793 0.96001 1.01992 1.01536 1.21531 0.95783 0.95498 1.02846 1.21445 0.92869 0.97832 1.01959 1.22983 0.96828 0.93969 0.99900 0.87305 1.23791 0.83393 0.99646 0.95876 1.88848 1.30403 1.24525 1.87603 1.23801 0.99757 0.83570 0.97447 1.22211 0.88118 0.89799 0.98033 0.88503 1.44709 1.31757 1.04389 1.56118 1.17578 0.92623 0.83862 0.91638 1.20364 1.03970 0.96087 1.10714 1.20767 0.96415 0.93115 0.96346 1.20962 1.00507 0.98639 1.11263 1.17582 0.90844 0.91730 0.89422 1.19454 1.21059 1.06124 1.05365 0.93101 1.26808 0.92036 0.92575 1.05057 1.69737 1.33029 1.05361 1.40070 0.85401 0.77770 0.80057 0.77210 1.18543 1.20753 1.17785 1.20485 1.03993 0.93007 1.14361 0.93202 0.91768 0.93340 0.90992 0.91082 0.92287 0.92424 0.92412 0.86813 0.88702 0.93342 0.76516 0.85582 0.85674 0.89177 0.89755 0.88997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.32 9.91 71.98 0.71 -1.61 16 2 C -0.12 -1.65 5.78 30.59 0.18 -1.47 16 3 C -0.10 -1.84 3.94 30.60 0.12 -1.71 16 4 C -0.12 -2.09 3.13 -9.49 -0.03 -2.12 16 5 H 0.11 1.65 8.14 -2.38 -0.02 1.63 16 6 C 0.05 0.89 6.36 72.66 0.46 1.35 16 7 O -0.39 -9.55 11.52 -148.98 -1.72 -11.27 16 8 C 0.03 0.80 7.50 72.35 0.54 1.34 16 9 C 0.12 2.94 3.01 45.98 0.14 3.07 16 10 H 0.10 2.28 6.38 -2.39 -0.02 2.26 16 11 N -0.74 -21.77 4.60 -314.46 -1.45 -23.22 16 12 C 0.24 9.53 6.64 38.16 0.25 9.78 16 13 C -0.29 -10.83 9.23 22.59 0.21 -10.62 16 14 C -0.05 -1.95 10.02 22.20 0.22 -1.73 16 15 C -0.29 -14.22 7.17 22.76 0.16 -14.05 16 16 C 0.11 5.65 5.10 -21.31 -0.11 5.54 16 17 C -0.49 -28.54 9.57 23.46 0.22 -28.32 16 18 H 0.05 3.19 8.06 -2.91 -0.02 3.17 16 19 C 0.05 2.72 5.40 85.25 0.46 3.18 16 20 N -0.86 -48.42 13.93 21.82 0.30 -48.12 16 21 Si 0.97 44.53 24.52 68.60 1.68 46.21 16 22 H -0.26 -11.29 6.71 99.48 0.67 -10.62 16 23 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 24 H -0.25 -11.89 6.86 99.48 0.68 -11.20 16 25 C -0.29 -13.82 9.63 22.85 0.22 -13.60 16 26 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 28 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.07 0.85 7.46 -2.38 -0.02 0.84 16 30 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.06 1.12 6.25 -2.38 -0.01 1.11 16 33 H 0.06 1.07 8.02 -2.39 -0.02 1.05 16 34 H 0.11 1.53 8.08 -2.39 -0.02 1.51 16 35 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.05 1.37 7.93 -2.39 -0.02 1.35 16 37 H 0.40 11.09 6.44 -92.71 -0.60 10.50 16 38 H 0.13 3.89 6.17 -2.91 -0.02 3.87 16 39 H 0.13 4.25 8.06 -2.91 -0.02 4.23 16 40 H 0.09 4.41 4.73 -2.91 -0.01 4.40 16 41 H 0.29 14.85 8.30 -92.71 -0.77 14.08 16 42 H 0.09 4.26 8.06 -2.91 -0.02 4.23 16 Total: -1.00 -62.73 328.57 2.94 -59.80 By element: Atomic # 1 Polarization: 27.21 SS G_CDS: 0.35 Total: 27.56 kcal Atomic # 6 Polarization: -54.73 SS G_CDS: 3.77 Total: -50.96 kcal Atomic # 7 Polarization: -70.19 SS G_CDS: -1.14 Total: -71.34 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: -1.72 Total: -11.27 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 1.68 Total: 46.21 kcal Total: -62.73 2.94 -59.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710906628.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.680 kcal (2) G-P(sol) polarization free energy of solvation -62.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds