Wall clock time and date at job start Mon Mar 30 2020 07:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47198 * 2 1 4 4 C 1.52994 * 109.47568 * 180.02562 * 3 2 1 5 5 H 1.09000 * 110.56377 * 307.67916 * 4 3 2 6 6 C 1.54481 * 110.51480 * 70.35148 * 4 3 2 7 7 O 1.44423 * 104.80091 * 142.62367 * 6 4 3 8 8 C 1.44426 * 105.27801 * 319.49232 * 7 6 4 9 9 C 1.54475 * 104.79946 * 40.51237 * 8 7 6 10 10 H 1.08997 * 110.62432 * 217.31444 * 9 8 7 11 11 N 1.46503 * 110.51063 * 94.66683 * 9 8 7 12 12 C 1.39683 * 119.99825 * 90.35574 * 11 9 8 13 13 C 1.39334 * 119.95671 * 359.97438 * 12 11 9 14 14 C 1.38478 * 120.42737 * 180.02562 * 13 12 11 15 15 C 1.37684 * 120.32681 * 359.97438 * 14 13 12 16 16 C 1.40756 * 119.89334 * 0.02562 * 15 14 13 17 17 C 1.41402 * 120.20935 * 180.02562 * 16 15 14 18 18 H 1.07997 * 119.99988 * 330.01854 * 17 16 15 19 19 C 1.39931 * 119.99742 * 150.30308 * 17 16 15 20 20 N 1.30832 * 119.99748 * 161.76640 * 19 17 16 21 21 Si 1.86795 * 120.00301 * 341.76044 * 19 17 16 22 22 H 1.48501 * 109.46771 * 95.40706 * 21 19 17 23 23 H 1.48499 * 109.47313 * 215.40508 * 21 19 17 24 24 H 1.48504 * 109.47098 * 335.41138 * 21 19 17 25 25 C 1.38287 * 119.94997 * 180.30082 * 12 11 9 26 26 H 1.09002 * 109.47454 * 300.00168 * 1 2 3 27 27 H 1.09008 * 109.47099 * 60.00203 * 1 2 3 28 28 H 1.08997 * 109.47251 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47454 * 239.99832 * 2 1 3 30 30 H 1.09003 * 109.47256 * 119.99338 * 2 1 3 31 31 H 1.09002 * 109.47055 * 59.99588 * 3 2 1 32 32 H 1.09008 * 109.46930 * 299.99900 * 3 2 1 33 33 H 1.08994 * 110.37392 * 261.46351 * 6 4 3 34 34 H 1.09003 * 110.36810 * 23.79934 * 6 4 3 35 35 H 1.08996 * 110.36882 * 281.68021 * 8 7 6 36 36 H 1.09003 * 110.36736 * 159.34005 * 8 7 6 37 37 H 0.96998 * 119.99740 * 270.35101 * 11 9 8 38 38 H 1.08003 * 119.78318 * 0.02562 * 13 12 11 39 39 H 1.08000 * 119.83620 * 180.02562 * 14 13 12 40 40 H 1.07992 * 120.05692 * 180.02562 * 15 14 13 41 41 H 0.96996 * 120.00021 * 179.97438 * 20 19 17 42 42 H 1.07998 * 120.16408 * 359.97438 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 3.9532 0.8187 0.8068 6 6 4.1107 0.9564 -1.3635 7 8 5.2791 1.7693 -1.6081 8 6 4.9151 3.0985 -1.1762 9 6 4.1113 2.8842 0.1254 10 1 3.2890 3.5966 0.1907 11 7 4.9862 3.0036 1.2945 12 6 5.1656 4.2453 1.9086 13 6 4.5126 5.3698 1.4082 14 6 4.6839 6.6056 2.0090 15 6 5.5018 6.7366 3.1088 16 6 6.1681 5.6096 3.6257 17 6 7.0092 5.7363 4.7552 18 1 7.5310 6.6639 4.9386 19 6 7.1703 4.6578 5.6321 20 7 8.1883 4.6289 6.4534 21 14 5.9317 3.2595 5.6302 22 1 6.4279 2.1600 4.7641 23 1 5.7519 2.7556 7.0155 24 1 4.6308 3.7512 5.1094 25 6 5.9965 4.3580 3.0083 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8901 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5137 0.8901 31 1 1.6766 1.9564 0.8900 32 1 1.6766 1.9564 -0.8901 33 1 4.3859 -0.0969 -1.3087 34 1 3.3677 1.1151 -2.1451 35 1 4.2954 3.5857 -1.9290 36 1 5.8084 3.6908 -0.9774 37 1 5.4407 2.2203 1.6421 38 1 3.8686 5.2769 0.5461 39 1 4.1727 7.4709 1.6134 40 1 5.6319 7.7023 3.5742 41 1 8.2997 3.8815 7.0615 42 1 6.5070 3.4881 3.3941 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710906633.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:13 Heat of formation + Delta-G solvation = -59.642908 kcal Electronic energy + Delta-G solvation = -21314.816820 eV Core-core repulsion = 18257.756741 eV Total energy + Delta-G solvation = -3057.060079 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.03087 -39.52511 -36.47442 -36.15525 -35.08246 -32.27795 -32.11662 -30.36814 -28.43295 -27.01757 -26.69837 -23.98174 -23.42611 -22.44081 -21.34558 -21.26122 -19.22320 -18.03426 -17.46561 -16.94021 -16.85947 -16.51327 -16.28431 -15.85857 -15.34845 -14.99595 -14.66653 -14.47774 -14.18907 -14.03962 -13.93417 -13.57723 -13.41354 -13.21602 -12.89325 -12.63989 -12.44218 -12.29025 -12.14489 -12.07368 -11.79021 -11.65013 -11.61074 -11.47593 -11.38313 -11.09376 -10.90425 -10.44939 -9.42398 -8.88969 -8.12793 -6.50248 0.88719 1.04841 1.23600 1.42750 1.48463 2.13370 2.57782 2.66812 3.02085 3.45234 3.62171 3.81908 3.91114 4.06260 4.20134 4.29022 4.31592 4.38170 4.41591 4.55938 4.65674 4.70164 4.79472 4.81773 4.83629 4.89339 4.95077 4.99239 5.01569 5.07434 5.15785 5.28368 5.28646 5.37754 5.43236 5.47794 5.72114 5.81579 5.95602 6.00265 6.19591 6.34060 6.66508 6.83338 6.87682 7.01619 8.20271 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.018473 B = 0.004939 C = 0.004538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.391581 B = 5667.583534 C = 6169.085430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C -0.104 4.104 4 C -0.124 4.124 5 H 0.081 0.919 6 C 0.050 3.950 7 O -0.399 6.399 8 C 0.031 3.969 9 C 0.126 3.874 10 H 0.102 0.898 11 N -0.744 5.744 12 C 0.242 3.758 13 C -0.290 4.290 14 C -0.045 4.045 15 C -0.270 4.270 16 C 0.106 3.894 17 C -0.490 4.490 18 H 0.054 0.946 19 C 0.049 3.951 20 N -0.855 5.855 21 Si 0.974 3.026 22 H -0.264 1.264 23 H -0.281 1.281 24 H -0.256 1.256 25 C -0.318 4.318 26 H 0.048 0.952 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.073 0.927 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.080 0.920 33 H 0.100 0.900 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.075 0.925 37 H 0.392 0.608 38 H 0.128 0.872 39 H 0.131 0.869 40 H 0.094 0.906 41 H 0.292 0.708 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.849 -10.365 -14.869 23.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.141 4.141 4 C -0.143 4.143 5 H 0.099 0.901 6 C -0.027 4.027 7 O -0.318 6.318 8 C -0.047 4.047 9 C 0.020 3.980 10 H 0.119 0.881 11 N -0.374 5.374 12 C 0.141 3.859 13 C -0.313 4.313 14 C -0.064 4.064 15 C -0.290 4.290 16 C 0.103 3.897 17 C -0.520 4.520 18 H 0.072 0.928 19 C -0.165 4.165 20 N -0.482 5.482 21 Si 0.799 3.201 22 H -0.190 1.190 23 H -0.208 1.208 24 H -0.180 1.180 25 C -0.342 4.342 26 H 0.067 0.933 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.091 0.909 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.098 0.902 33 H 0.119 0.881 34 H 0.100 0.900 35 H 0.104 0.896 36 H 0.094 0.906 37 H 0.226 0.774 38 H 0.146 0.854 39 H 0.149 0.851 40 H 0.113 0.887 41 H 0.102 0.898 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -14.593 -10.471 -14.896 23.334 hybrid contribution 0.439 -0.389 0.997 1.157 sum -14.154 -10.860 -13.899 22.616 Atomic orbital electron populations 1.21770 0.95288 1.02007 1.01949 1.21537 0.96348 0.95853 1.02343 1.21608 0.91581 0.98092 1.02848 1.22837 0.97632 0.94694 0.99155 0.90111 1.23677 0.87654 0.96305 0.95036 1.89123 1.36904 1.20521 1.85274 1.24030 1.00167 0.85143 0.95407 1.22386 0.92520 0.98072 0.85023 0.88053 1.44731 1.53023 1.06966 1.32692 1.17630 0.91862 0.86222 0.90233 1.20364 1.11782 0.91842 1.07329 1.20801 0.95248 0.96987 0.93361 1.21047 1.06696 0.97891 1.03391 1.17610 0.88791 0.92098 0.91231 1.19505 1.24642 0.99636 1.08207 0.92763 1.26794 0.95988 1.00314 0.93390 1.69742 1.26487 1.32508 1.19451 0.85353 0.80418 0.77745 0.76622 1.18972 1.20824 1.17999 1.20481 1.12367 0.97859 1.03446 0.93274 0.92062 0.92212 0.90860 0.92583 0.92290 0.90164 0.88149 0.90049 0.89624 0.90614 0.77381 0.85444 0.85140 0.88749 0.89810 0.89302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.91 71.98 0.71 -1.12 16 2 C -0.12 -1.61 5.81 30.59 0.18 -1.44 16 3 C -0.10 -1.59 4.43 30.59 0.14 -1.45 16 4 C -0.12 -2.38 2.87 -9.78 -0.03 -2.41 16 5 H 0.08 1.70 7.70 -2.39 -0.02 1.68 16 6 C 0.05 0.89 6.51 72.49 0.47 1.36 16 7 O -0.40 -10.31 11.65 -148.98 -1.74 -12.05 16 8 C 0.03 0.75 7.35 72.48 0.53 1.29 16 9 C 0.13 3.11 2.83 46.00 0.13 3.24 16 10 H 0.10 2.39 5.98 -2.39 -0.01 2.37 16 11 N -0.74 -24.57 5.26 -314.34 -1.65 -26.23 16 12 C 0.24 9.94 6.64 38.17 0.25 10.20 16 13 C -0.29 -10.96 9.23 22.59 0.21 -10.75 16 14 C -0.05 -1.80 10.01 22.20 0.22 -1.58 16 15 C -0.27 -12.89 9.79 22.75 0.22 -12.67 16 16 C 0.11 5.64 5.10 -21.31 -0.11 5.53 16 17 C -0.49 -28.84 9.57 23.46 0.22 -28.61 16 18 H 0.05 3.42 8.06 -2.91 -0.02 3.40 16 19 C 0.05 2.74 5.40 85.25 0.46 3.20 16 20 N -0.85 -48.87 13.93 21.82 0.30 -48.57 16 21 Si 0.97 45.31 24.52 68.60 1.68 47.00 16 22 H -0.26 -11.63 6.71 99.48 0.67 -10.97 16 23 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 24 H -0.26 -12.23 6.87 99.48 0.68 -11.55 16 25 C -0.32 -15.52 7.01 22.86 0.16 -15.36 16 26 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 28 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.07 0.80 7.63 -2.39 -0.02 0.78 16 30 H 0.06 0.81 8.14 -2.39 -0.02 0.80 16 31 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.08 1.02 7.96 -2.38 -0.02 1.00 16 33 H 0.10 1.55 8.14 -2.39 -0.02 1.54 16 34 H 0.08 1.13 7.74 -2.39 -0.02 1.11 16 35 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.08 2.22 8.06 -2.39 -0.02 2.20 16 37 H 0.39 12.88 8.39 -92.71 -0.78 12.11 16 38 H 0.13 3.90 6.18 -2.91 -0.02 3.89 16 39 H 0.13 4.18 8.06 -2.91 -0.02 4.15 16 40 H 0.09 4.41 8.06 -2.91 -0.02 4.39 16 41 H 0.29 14.98 8.30 -92.71 -0.77 14.21 16 42 H 0.09 4.43 4.75 -2.91 -0.01 4.42 16 Total: -1.00 -64.41 332.38 2.54 -61.86 By element: Atomic # 1 Polarization: 28.41 SS G_CDS: 0.17 Total: 28.57 kcal Atomic # 6 Polarization: -54.37 SS G_CDS: 3.78 Total: -50.59 kcal Atomic # 7 Polarization: -73.44 SS G_CDS: -1.35 Total: -74.79 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: -1.74 Total: -12.05 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 1.68 Total: 47.00 kcal Total: -64.41 2.54 -61.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710906633.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.222 kcal (2) G-P(sol) polarization free energy of solvation -64.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds