Wall clock time and date at job start Mon Mar 30 2020 07:50:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.57144 * 2 1 4 4 C 1.53083 * 109.52491 * 239.84273 * 2 1 3 5 5 O 1.42899 * 109.42084 * 182.48433 * 4 2 1 6 6 C 1.42897 * 114.09544 * 61.15243 * 5 4 2 7 7 C 1.53093 * 109.41830 * 298.84498 * 6 5 4 8 8 C 1.53173 * 109.16093 * 57.61236 * 7 6 5 9 9 H 1.09000 * 109.62336 * 62.92735 * 8 7 6 10 10 N 1.46901 * 109.54472 * 183.15509 * 8 7 6 11 11 C 1.46900 * 110.99757 * 274.55430 * 10 8 7 12 12 C 1.50697 * 109.47470 * 179.97438 * 11 10 8 13 13 C 1.38643 * 119.74877 * 89.99704 * 12 11 10 14 14 C 1.37613 * 120.24721 * 180.02562 * 13 12 11 15 15 C 1.40709 * 119.74697 * 359.97102 * 14 13 12 16 16 C 1.41399 * 120.24578 * 180.02562 * 15 14 13 17 17 H 1.08001 * 120.00010 * 335.72332 * 16 15 14 18 18 C 1.39946 * 119.99947 * 155.72470 * 16 15 14 19 19 N 1.30821 * 120.00035 * 342.29492 * 18 16 15 20 20 Si 1.86801 * 119.99891 * 162.30023 * 18 16 15 21 21 H 1.48503 * 109.46816 * 269.99556 * 20 18 16 22 22 H 1.48491 * 109.47175 * 29.99743 * 20 18 16 23 23 H 1.48496 * 109.47127 * 149.99732 * 20 18 16 24 24 C 1.40719 * 119.51207 * 0.28087 * 15 14 13 25 25 C 1.37617 * 119.74178 * 359.48807 * 24 15 14 26 26 H 1.09001 * 109.46913 * 299.84331 * 1 2 3 27 27 H 1.09002 * 109.47014 * 59.84131 * 1 2 3 28 28 H 1.08995 * 109.47324 * 179.84744 * 1 2 3 29 29 H 1.09004 * 109.48290 * 302.46929 * 4 2 1 30 30 H 1.09004 * 109.48142 * 62.49844 * 4 2 1 31 31 H 1.09000 * 109.47991 * 58.83138 * 6 5 4 32 32 H 1.09001 * 109.47900 * 178.85296 * 6 5 4 33 33 H 1.08996 * 109.52497 * 297.70274 * 7 6 5 34 34 H 1.09005 * 109.52154 * 177.51353 * 7 6 5 35 35 H 1.00900 * 111.00387 * 150.59884 * 10 8 7 36 36 H 1.09004 * 109.47413 * 59.99200 * 11 10 8 37 37 H 1.09008 * 109.46895 * 299.99894 * 11 10 8 38 38 H 1.07997 * 119.87202 * 0.02562 * 13 12 11 39 39 H 1.08004 * 120.12624 * 179.97438 * 14 13 12 40 40 H 0.97004 * 120.00360 * 179.97438 * 19 18 16 41 41 H 1.07999 * 120.12475 * 179.72303 * 24 15 14 42 42 H 1.07999 * 119.87173 * 180.22839 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8951 1.0271 0.0000 4 6 2.0416 -0.7248 -1.2475 5 8 3.4694 -0.7742 -1.2163 6 6 4.0043 -1.4814 -0.0957 7 6 3.5716 -0.7869 1.1982 8 6 2.0419 -0.7252 1.2484 9 1 1.6355 -1.7362 1.2750 10 7 1.6188 0.0065 2.4499 11 6 1.5473 -0.8880 3.6130 12 6 1.1116 -0.1038 4.8238 13 6 -0.2380 0.0119 5.1194 14 6 -0.6473 0.7260 6.2223 15 6 0.3098 1.3394 7.0515 16 6 -0.0990 2.0752 8.1876 17 1 -1.0896 2.5038 8.2257 18 6 0.7800 2.2481 9.2628 19 7 1.8230 1.4683 9.3869 20 14 0.4639 3.5924 10.5207 21 1 1.1395 4.8426 10.0895 22 1 -0.9972 3.8325 10.6321 23 1 0.9983 3.1709 11.8405 24 6 1.6765 1.2197 6.7387 25 6 2.0632 0.4968 5.6334 26 1 -0.3633 0.5114 0.8914 27 1 -0.3633 0.5163 -0.8886 28 1 -0.3634 -1.0276 -0.0027 29 1 1.6432 -1.7392 -1.2677 30 1 1.7159 -0.1885 -2.1388 31 1 3.6316 -2.5057 -0.1007 32 1 5.0925 -1.4903 -0.1573 33 1 3.9780 0.2242 1.2224 34 1 3.9417 -1.3498 2.0551 35 1 0.7370 0.4727 2.2976 36 1 2.5292 -1.3242 3.7969 37 1 0.8278 -1.6830 3.4162 38 1 -0.9708 -0.4602 4.4818 39 1 -1.6992 0.8152 6.4505 40 1 2.4325 1.5883 10.1319 41 1 2.4193 1.6903 7.3658 42 1 3.1118 0.4005 5.3935 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399123708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:50:15 Heat of formation + Delta-G solvation = -45.204935 kcal Electronic energy + Delta-G solvation = -20902.327310 eV Core-core repulsion = 17845.893308 eV Total energy + Delta-G solvation = -3056.434002 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.76216 -37.73243 -36.09377 -33.97160 -32.90570 -31.54727 -29.64371 -29.18202 -26.96399 -26.39303 -24.02899 -22.77568 -22.10831 -20.94832 -20.12201 -19.70480 -17.28989 -16.47275 -16.25061 -15.36547 -15.34903 -15.07612 -14.56322 -14.24263 -13.93201 -13.81926 -13.30215 -13.06417 -12.81296 -12.42255 -12.33147 -12.12324 -11.98371 -11.89985 -11.49548 -11.31085 -11.12641 -11.05368 -10.95843 -10.60736 -10.49246 -10.40594 -10.20899 -9.69837 -9.51742 -9.35266 -9.13538 -8.06425 -7.43441 -7.30370 -6.75783 -4.34675 2.74692 3.06884 3.08801 3.10723 3.18616 3.75156 3.93283 4.35576 4.58201 4.67268 4.73327 4.81559 5.08084 5.15674 5.27616 5.35527 5.46052 5.50464 5.54870 5.67616 5.74653 5.78023 5.85078 5.93314 5.94705 6.04475 6.14372 6.24822 6.33542 6.39541 6.46416 6.96532 7.06190 7.07838 7.30400 7.36717 7.42328 7.62105 7.73017 7.90137 8.06647 8.15895 8.31005 8.65611 8.90307 8.98815 10.18776 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.037158 B = 0.003278 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.365293 B = 8539.681755 C = 8893.653258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.130 4.130 3 H 0.088 0.912 4 C 0.069 3.931 5 O -0.384 6.384 6 C 0.061 3.939 7 C -0.144 4.144 8 C 0.089 3.911 9 H 0.038 0.962 10 N -0.679 5.679 11 C 0.125 3.875 12 C -0.213 4.213 13 C -0.086 4.086 14 C -0.228 4.228 15 C 0.113 3.887 16 C -0.464 4.464 17 H 0.077 0.923 18 C 0.076 3.924 19 N -0.793 5.793 20 Si 0.908 3.092 21 H -0.267 1.267 22 H -0.263 1.263 23 H -0.278 1.278 24 C -0.167 4.167 25 C -0.078 4.078 26 H 0.064 0.936 27 H 0.059 0.941 28 H 0.053 0.947 29 H 0.047 0.953 30 H 0.092 0.908 31 H 0.046 0.954 32 H 0.093 0.907 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.341 0.659 36 H 0.061 0.939 37 H 0.017 0.983 38 H 0.082 0.918 39 H 0.090 0.910 40 H 0.280 0.720 41 H 0.117 0.883 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.345 -4.292 -14.659 15.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.149 4.149 3 H 0.106 0.894 4 C -0.008 4.008 5 O -0.303 6.303 6 C -0.016 4.016 7 C -0.182 4.182 8 C -0.021 4.021 9 H 0.056 0.944 10 N -0.312 5.312 11 C -0.002 4.002 12 C -0.215 4.215 13 C -0.105 4.105 14 C -0.247 4.247 15 C 0.110 3.890 16 C -0.493 4.493 17 H 0.095 0.905 18 C -0.142 4.142 19 N -0.418 5.418 20 Si 0.732 3.268 21 H -0.193 1.193 22 H -0.187 1.187 23 H -0.203 1.203 24 C -0.187 4.187 25 C -0.097 4.097 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.111 0.889 31 H 0.064 0.936 32 H 0.111 0.889 33 H 0.098 0.902 34 H 0.091 0.909 35 H 0.162 0.838 36 H 0.079 0.921 37 H 0.035 0.965 38 H 0.100 0.900 39 H 0.108 0.892 40 H 0.091 0.909 41 H 0.135 0.865 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.281 -4.051 -14.476 15.204 hybrid contribution -1.095 -0.103 0.800 1.360 sum 1.185 -4.154 -13.676 14.342 Atomic orbital electron populations 1.21809 0.94615 1.01919 1.02479 1.21964 0.96161 1.01629 0.95144 0.89375 1.22610 0.81072 0.99378 0.97724 1.87907 1.20241 1.76518 1.45641 1.22623 0.98966 0.94355 0.85666 1.22216 0.95964 1.02631 0.97413 1.21544 0.95129 0.95449 0.89965 0.94388 1.60687 1.37039 1.31015 1.02446 1.20588 0.98849 0.92198 0.88587 1.18889 0.93221 1.10165 0.99222 1.20345 0.94003 0.99205 0.96914 1.20922 0.97751 1.06092 0.99962 1.17623 0.91523 0.88671 0.91163 1.19610 1.00366 1.29499 0.99861 0.90502 1.25909 0.94120 0.95373 0.98759 1.69828 1.11711 1.31712 1.28552 0.86321 0.79888 0.81416 0.79140 1.19252 1.18652 1.20343 1.21319 0.96661 1.03312 0.97361 1.20489 0.96573 0.97654 0.95009 0.91739 0.92167 0.92762 0.93438 0.88946 0.93560 0.88874 0.90234 0.90938 0.83839 0.92056 0.96520 0.90023 0.89194 0.90892 0.86530 0.89521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.01 37.16 0.33 -1.15 16 2 C -0.13 -1.44 2.54 -90.48 -0.23 -1.67 16 3 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 4 C 0.07 0.70 6.13 37.20 0.23 0.93 16 5 O -0.38 -4.60 10.77 -35.23 -0.38 -4.98 16 6 C 0.06 0.64 6.84 37.21 0.25 0.90 16 7 C -0.14 -1.76 5.63 -26.59 -0.15 -1.91 16 8 C 0.09 1.14 2.02 -67.53 -0.14 1.00 16 9 H 0.04 0.49 7.80 -51.93 -0.41 0.09 16 10 N -0.68 -10.60 6.30 -107.79 -0.68 -11.28 16 11 C 0.13 2.20 5.60 -4.98 -0.03 2.17 16 12 C -0.21 -4.60 5.42 -104.33 -0.56 -5.17 16 13 C -0.09 -1.90 9.67 -39.66 -0.38 -2.28 16 14 C -0.23 -5.60 9.80 -38.88 -0.38 -5.98 16 15 C 0.11 3.02 5.57 -106.82 -0.60 2.43 16 16 C -0.46 -12.39 9.05 -37.74 -0.34 -12.73 16 17 H 0.08 1.98 7.91 -52.49 -0.41 1.56 16 18 C 0.08 1.92 5.14 -17.34 -0.09 1.83 16 19 N -0.79 -20.59 10.95 55.55 0.61 -19.99 16 20 Si 0.91 18.74 29.59 -169.99 -5.03 13.71 16 21 H -0.27 -5.47 7.11 56.52 0.40 -5.06 16 22 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 23 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 24 C -0.17 -4.38 8.70 -38.87 -0.34 -4.72 16 25 C -0.08 -1.84 9.67 -39.66 -0.38 -2.23 16 26 H 0.06 0.70 6.36 -51.93 -0.33 0.37 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.07 0.90 7.58 -51.93 -0.39 0.50 16 35 H 0.34 5.31 6.37 -39.29 -0.25 5.06 16 36 H 0.06 1.06 7.48 -51.93 -0.39 0.67 16 37 H 0.02 0.28 8.00 -51.92 -0.42 -0.13 16 38 H 0.08 1.59 8.06 -52.49 -0.42 1.17 16 39 H 0.09 2.09 8.06 -52.48 -0.42 1.67 16 40 H 0.28 6.61 8.30 -40.82 -0.34 6.28 16 41 H 0.12 3.16 6.16 -52.49 -0.32 2.84 16 42 H 0.09 1.90 8.06 -52.49 -0.42 1.47 16 LS Contribution 334.98 15.07 5.05 5.05 Total: -1.00 -27.48 334.98 -9.94 -37.43 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: -6.71 Total: 8.64 kcal Atomic # 6 Polarization: -25.77 SS G_CDS: -2.80 Total: -28.57 kcal Atomic # 7 Polarization: -31.20 SS G_CDS: -0.07 Total: -31.27 kcal Atomic # 8 Polarization: -4.60 SS G_CDS: -0.38 Total: -4.98 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -5.03 Total: 13.71 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -27.48 -9.94 -37.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399123708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.777 kcal (2) G-P(sol) polarization free energy of solvation -27.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds