Wall clock time and date at job start Mon Mar 30 2020 07:50:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.57144 * 2 1 4 4 C 1.53083 * 109.52491 * 239.84273 * 2 1 3 5 5 O 1.42899 * 109.42084 * 182.48433 * 4 2 1 6 6 C 1.42897 * 114.09544 * 61.15243 * 5 4 2 7 7 C 1.53093 * 109.41830 * 298.84498 * 6 5 4 8 8 C 1.53173 * 109.16093 * 57.61236 * 7 6 5 9 9 H 1.09000 * 109.62336 * 62.92735 * 8 7 6 10 10 N 1.46901 * 109.54472 * 183.15509 * 8 7 6 11 11 C 1.46900 * 110.99757 * 274.55430 * 10 8 7 12 12 C 1.50697 * 109.47470 * 179.97438 * 11 10 8 13 13 C 1.38643 * 119.74877 * 89.99704 * 12 11 10 14 14 C 1.37613 * 120.24721 * 180.02562 * 13 12 11 15 15 C 1.40709 * 119.74697 * 359.97102 * 14 13 12 16 16 C 1.41399 * 120.24578 * 180.02562 * 15 14 13 17 17 H 1.08001 * 120.00010 * 335.72332 * 16 15 14 18 18 C 1.39946 * 119.99947 * 155.72470 * 16 15 14 19 19 N 1.30821 * 120.00035 * 342.29492 * 18 16 15 20 20 Si 1.86801 * 119.99891 * 162.30023 * 18 16 15 21 21 H 1.48503 * 109.46816 * 269.99556 * 20 18 16 22 22 H 1.48491 * 109.47175 * 29.99743 * 20 18 16 23 23 H 1.48496 * 109.47127 * 149.99732 * 20 18 16 24 24 C 1.40719 * 119.51207 * 0.28087 * 15 14 13 25 25 C 1.37617 * 119.74178 * 359.48807 * 24 15 14 26 26 H 1.09001 * 109.46913 * 299.84331 * 1 2 3 27 27 H 1.09002 * 109.47014 * 59.84131 * 1 2 3 28 28 H 1.08995 * 109.47324 * 179.84744 * 1 2 3 29 29 H 1.09004 * 109.48290 * 302.46929 * 4 2 1 30 30 H 1.09004 * 109.48142 * 62.49844 * 4 2 1 31 31 H 1.09000 * 109.47991 * 58.83138 * 6 5 4 32 32 H 1.09001 * 109.47900 * 178.85296 * 6 5 4 33 33 H 1.08996 * 109.52497 * 297.70274 * 7 6 5 34 34 H 1.09005 * 109.52154 * 177.51353 * 7 6 5 35 35 H 1.00900 * 111.00387 * 150.59884 * 10 8 7 36 36 H 1.09004 * 109.47413 * 59.99200 * 11 10 8 37 37 H 1.09008 * 109.46895 * 299.99894 * 11 10 8 38 38 H 1.07997 * 119.87202 * 0.02562 * 13 12 11 39 39 H 1.08004 * 120.12624 * 179.97438 * 14 13 12 40 40 H 0.97004 * 120.00360 * 179.97438 * 19 18 16 41 41 H 1.07999 * 120.12475 * 179.72303 * 24 15 14 42 42 H 1.07999 * 119.87173 * 180.22839 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8951 1.0271 0.0000 4 6 2.0416 -0.7248 -1.2475 5 8 3.4694 -0.7742 -1.2163 6 6 4.0043 -1.4814 -0.0957 7 6 3.5716 -0.7869 1.1982 8 6 2.0419 -0.7252 1.2484 9 1 1.6355 -1.7362 1.2750 10 7 1.6188 0.0065 2.4499 11 6 1.5473 -0.8880 3.6130 12 6 1.1116 -0.1038 4.8238 13 6 -0.2380 0.0119 5.1194 14 6 -0.6473 0.7260 6.2223 15 6 0.3098 1.3394 7.0515 16 6 -0.0990 2.0752 8.1876 17 1 -1.0896 2.5038 8.2257 18 6 0.7800 2.2481 9.2628 19 7 1.8230 1.4683 9.3869 20 14 0.4639 3.5924 10.5207 21 1 1.1395 4.8426 10.0895 22 1 -0.9972 3.8325 10.6321 23 1 0.9983 3.1709 11.8405 24 6 1.6765 1.2197 6.7387 25 6 2.0632 0.4968 5.6334 26 1 -0.3633 0.5114 0.8914 27 1 -0.3633 0.5163 -0.8886 28 1 -0.3634 -1.0276 -0.0027 29 1 1.6432 -1.7392 -1.2677 30 1 1.7159 -0.1885 -2.1388 31 1 3.6316 -2.5057 -0.1007 32 1 5.0925 -1.4903 -0.1573 33 1 3.9780 0.2242 1.2224 34 1 3.9417 -1.3498 2.0551 35 1 0.7370 0.4727 2.2976 36 1 2.5292 -1.3242 3.7969 37 1 0.8278 -1.6830 3.4162 38 1 -0.9708 -0.4602 4.4818 39 1 -1.6992 0.8152 6.4505 40 1 2.4325 1.5883 10.1319 41 1 2.4193 1.6903 7.3658 42 1 3.1118 0.4005 5.3935 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399123708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:50:15 Heat of formation + Delta-G solvation = -60.581066 kcal Electronic energy + Delta-G solvation = -20902.994069 eV Core-core repulsion = 17845.893308 eV Total energy + Delta-G solvation = -3057.100761 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.69876 -39.49155 -37.28993 -35.65970 -34.08167 -32.74333 -31.33532 -30.97229 -28.13953 -27.64933 -25.44539 -23.94385 -23.12633 -22.83957 -21.65110 -20.87394 -19.21749 -17.51934 -17.17293 -17.11766 -16.43105 -16.18071 -15.77453 -15.63152 -15.43598 -15.34312 -14.57159 -14.42264 -14.06693 -13.83705 -13.75045 -13.47116 -13.27736 -12.97825 -12.95429 -12.78830 -12.72521 -12.35985 -12.16445 -12.06825 -11.95517 -11.51731 -11.40098 -11.23680 -11.13288 -11.01404 -10.49659 -9.35483 -9.34394 -9.14092 -8.63627 -6.33247 0.95080 1.15627 1.37377 1.50632 1.51316 2.20488 2.69162 2.95963 3.31950 3.68679 3.78720 3.87620 3.91808 4.20325 4.26611 4.32087 4.33643 4.45746 4.50261 4.56698 4.59995 4.65798 4.70391 4.77765 4.86151 4.88865 4.93974 5.06643 5.10119 5.16487 5.19058 5.27681 5.37398 5.40381 5.47145 5.71707 5.95170 6.10858 6.18893 6.25859 6.29686 6.39707 6.54816 6.71836 6.94849 7.05025 8.33453 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.037158 B = 0.003278 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.365293 B = 8539.681755 C = 8893.653258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.125 4.125 3 H 0.071 0.929 4 C 0.069 3.931 5 O -0.402 6.402 6 C 0.063 3.937 7 C -0.143 4.143 8 C 0.089 3.911 9 H 0.046 0.954 10 N -0.688 5.688 11 C 0.134 3.866 12 C -0.200 4.200 13 C -0.085 4.085 14 C -0.243 4.243 15 C 0.080 3.920 16 C -0.504 4.504 17 H 0.074 0.926 18 C 0.035 3.965 19 N -0.826 5.826 20 Si 0.982 3.018 21 H -0.263 1.263 22 H -0.258 1.258 23 H -0.267 1.267 24 C -0.192 4.192 25 C -0.086 4.086 26 H 0.051 0.949 27 H 0.075 0.925 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.108 0.892 31 H 0.060 0.940 32 H 0.105 0.895 33 H 0.060 0.940 34 H 0.069 0.931 35 H 0.341 0.659 36 H 0.065 0.935 37 H 0.032 0.968 38 H 0.115 0.885 39 H 0.095 0.905 40 H 0.287 0.713 41 H 0.097 0.903 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.962 -5.043 -16.243 17.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.144 4.144 3 H 0.090 0.910 4 C -0.008 4.008 5 O -0.321 6.321 6 C -0.014 4.014 7 C -0.181 4.181 8 C -0.020 4.020 9 H 0.064 0.936 10 N -0.322 5.322 11 C 0.006 3.994 12 C -0.202 4.202 13 C -0.103 4.103 14 C -0.263 4.263 15 C 0.077 3.923 16 C -0.533 4.533 17 H 0.092 0.908 18 C -0.180 4.180 19 N -0.452 5.452 20 Si 0.803 3.197 21 H -0.188 1.188 22 H -0.182 1.182 23 H -0.192 1.192 24 C -0.211 4.211 25 C -0.105 4.105 26 H 0.070 0.930 27 H 0.094 0.906 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.126 0.874 31 H 0.079 0.921 32 H 0.124 0.876 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.162 0.838 36 H 0.083 0.917 37 H 0.050 0.950 38 H 0.133 0.867 39 H 0.114 0.886 40 H 0.098 0.902 41 H 0.115 0.885 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 1.896 -4.814 -16.082 16.894 hybrid contribution -0.954 0.042 1.142 1.489 sum 0.942 -4.772 -14.940 15.712 Atomic orbital electron populations 1.21782 0.93514 1.02507 1.02679 1.21907 0.97026 1.00588 0.94861 0.91012 1.22737 0.80229 1.00214 0.97652 1.87893 1.21334 1.76847 1.45983 1.22675 0.99821 0.94571 0.84289 1.22197 0.95616 1.01782 0.98511 1.21624 0.95413 0.95622 0.89390 0.93640 1.60585 1.37222 1.31229 1.03121 1.20462 0.99330 0.92039 0.87591 1.19329 0.92707 1.08358 0.99761 1.20679 0.95054 0.98258 0.96328 1.21148 0.97822 1.06557 1.00732 1.17963 0.92280 0.89831 0.92184 1.19851 1.01046 1.31344 1.01068 0.90794 1.26761 0.93576 0.97220 1.00454 1.69882 1.12642 1.33086 1.29618 0.85204 0.79861 0.78039 0.76594 1.18777 1.18179 1.19174 1.21271 0.96326 1.04990 0.98534 1.20714 0.97831 0.97368 0.94579 0.92959 0.90571 0.91940 0.92101 0.87355 0.92139 0.87650 0.92077 0.91198 0.83777 0.91690 0.94962 0.86697 0.88634 0.90200 0.88498 0.88284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 9.01 71.98 0.65 -1.86 16 2 C -0.12 -2.49 2.54 -10.71 -0.03 -2.51 16 3 H 0.07 1.67 8.14 -2.39 -0.02 1.66 16 4 C 0.07 1.19 6.13 72.01 0.44 1.63 16 5 O -0.40 -8.68 10.77 -148.98 -1.60 -10.29 16 6 C 0.06 1.19 6.84 72.01 0.49 1.68 16 7 C -0.14 -3.27 5.63 30.68 0.17 -3.10 16 8 C 0.09 2.08 2.02 45.03 0.09 2.17 16 9 H 0.05 1.03 7.80 -2.39 -0.02 1.01 16 10 N -0.69 -20.26 6.30 -494.95 -3.12 -23.38 16 11 C 0.13 4.39 5.60 85.56 0.48 4.87 16 12 C -0.20 -8.40 5.42 -19.68 -0.11 -8.51 16 13 C -0.08 -3.64 9.67 22.22 0.21 -3.43 16 14 C -0.24 -12.07 9.80 22.73 0.22 -11.85 16 15 C 0.08 4.42 5.57 -21.29 -0.12 4.30 16 16 C -0.50 -27.89 9.05 23.46 0.21 -27.68 16 17 H 0.07 3.96 7.91 -2.91 -0.02 3.93 16 18 C 0.03 1.78 5.14 85.26 0.44 2.22 16 19 N -0.83 -44.28 10.95 21.83 0.24 -44.04 16 20 Si 0.98 39.04 29.59 68.60 2.03 41.07 16 21 H -0.26 -10.17 7.11 99.48 0.71 -9.47 16 22 H -0.26 -9.95 7.11 99.48 0.71 -9.25 16 23 H -0.27 -10.04 7.11 99.48 0.71 -9.33 16 24 C -0.19 -10.40 8.70 22.73 0.20 -10.20 16 25 C -0.09 -4.09 9.67 22.22 0.21 -3.87 16 26 H 0.05 1.03 6.36 -2.39 -0.02 1.01 16 27 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 30 H 0.11 1.52 8.14 -2.38 -0.02 1.50 16 31 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.07 1.62 7.58 -2.38 -0.02 1.60 16 35 H 0.34 10.01 6.37 -89.69 -0.57 9.44 16 36 H 0.06 2.10 7.48 -2.38 -0.02 2.08 16 37 H 0.03 0.97 8.00 -2.38 -0.02 0.96 16 38 H 0.12 4.15 8.06 -2.91 -0.02 4.12 16 39 H 0.10 4.50 8.06 -2.91 -0.02 4.48 16 40 H 0.29 13.90 8.30 -92.71 -0.77 13.13 16 41 H 0.10 5.54 6.16 -2.91 -0.02 5.52 16 42 H 0.10 4.35 8.06 -2.91 -0.02 4.32 16 Total: -1.00 -60.50 334.98 1.55 -58.95 By element: Atomic # 1 Polarization: 33.41 SS G_CDS: 0.42 Total: 33.83 kcal Atomic # 6 Polarization: -59.72 SS G_CDS: 3.57 Total: -56.14 kcal Atomic # 7 Polarization: -64.54 SS G_CDS: -2.88 Total: -67.42 kcal Atomic # 8 Polarization: -8.68 SS G_CDS: -1.60 Total: -10.29 kcal Atomic # 14 Polarization: 39.04 SS G_CDS: 2.03 Total: 41.07 kcal Total: -60.50 1.55 -58.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399123708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.630 kcal (2) G-P(sol) polarization free energy of solvation -60.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds