Wall clock time and date at job start Mon Mar 30 2020 07:42:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 110.56472 * 2 1 4 4 C 1.54476 * 110.51523 * 122.68325 * 2 1 3 5 5 H 1.08997 * 110.36827 * 23.78669 * 4 2 1 6 6 C 1.53002 * 110.37061 * 261.56506 * 4 2 1 7 7 O 1.44419 * 104.80335 * 142.61898 * 4 2 1 8 8 C 1.44427 * 105.27907 * 319.49040 * 7 4 2 9 9 C 1.54474 * 104.80078 * 40.51075 * 8 7 4 10 10 H 1.08996 * 110.51461 * 94.67158 * 9 8 7 11 11 N 1.46900 * 110.62495 * 217.31837 * 9 8 7 12 12 C 1.46895 * 111.00364 * 279.24072 * 11 9 8 13 13 C 1.50697 * 109.47327 * 179.97438 * 12 11 9 14 14 C 1.38634 * 119.75046 * 269.73245 * 13 12 11 15 15 C 1.37620 * 120.24705 * 179.72218 * 14 13 12 16 16 C 1.40715 * 119.74480 * 0.56618 * 15 14 13 17 17 C 1.41393 * 120.24284 * 179.68274 * 16 15 14 18 18 H 1.08000 * 120.00218 * 24.74304 * 17 16 15 19 19 C 1.39949 * 119.99831 * 204.74853 * 17 16 15 20 20 N 1.30817 * 120.00210 * 17.92602 * 19 17 16 21 21 Si 1.86808 * 119.99816 * 197.92646 * 19 17 16 22 22 H 1.48503 * 109.47048 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47009 * 120.00008 * 21 19 17 24 24 H 1.48498 * 109.46944 * 239.99921 * 21 19 17 25 25 C 1.40707 * 119.51130 * 359.70939 * 16 15 14 26 26 C 1.37620 * 119.74934 * 359.97438 * 25 16 15 27 27 H 1.08999 * 109.46883 * 176.20234 * 1 2 3 28 28 H 1.09001 * 109.46523 * 296.20445 * 1 2 3 29 29 H 1.08997 * 109.46785 * 56.20282 * 1 2 3 30 30 H 1.09002 * 109.47034 * 60.00025 * 6 4 2 31 31 H 1.09000 * 109.46786 * 179.97438 * 6 4 2 32 32 H 1.08995 * 109.46817 * 299.99982 * 6 4 2 33 33 H 1.09001 * 110.36809 * 281.67720 * 8 7 4 34 34 H 1.09000 * 110.37165 * 159.34325 * 8 7 4 35 35 H 1.00908 * 110.99981 * 155.28965 * 11 9 8 36 36 H 1.08994 * 109.47157 * 300.00448 * 12 11 9 37 37 H 1.09002 * 109.46836 * 60.00492 * 12 11 9 38 38 H 1.07995 * 119.87913 * 359.97305 * 14 13 12 39 39 H 1.08005 * 120.12445 * 180.27888 * 15 14 13 40 40 H 0.97002 * 120.00435 * 180.02562 * 20 19 17 41 41 H 1.07998 * 120.13185 * 179.97438 * 25 16 15 42 42 H 1.07989 * 119.88085 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9130 1.0205 0.0000 4 6 2.0714 -0.7813 1.2177 5 1 1.3287 -1.4970 1.5700 6 6 2.4551 0.1834 2.3416 7 8 3.2399 -1.4714 0.7236 8 6 2.8757 -1.9422 -0.5923 9 6 2.0714 -0.7813 -1.2182 10 1 2.7218 -0.1470 -1.8204 11 7 0.9631 -1.2991 -2.0315 12 6 1.4342 -1.7158 -3.3590 13 6 0.2723 -2.2406 -4.1625 14 6 -0.0460 -3.5890 -4.1118 15 6 -1.1085 -4.0782 -4.8369 16 6 -1.8654 -3.2063 -5.6411 17 6 -2.9550 -3.6988 -6.3957 18 1 -3.4640 -4.5993 -6.0849 19 6 -3.3739 -3.0196 -7.5454 20 7 -2.5773 -2.1572 -8.1223 21 14 -5.0706 -3.3447 -8.2562 22 1 -5.7702 -4.3565 -7.4243 23 1 -5.8537 -2.0829 -8.2647 24 1 -4.9364 -3.8534 -9.6448 25 6 -1.5296 -1.8407 -5.6894 26 6 -0.4671 -1.3723 -4.9508 27 1 -0.3633 -1.0254 -0.0681 28 1 -0.3632 0.4538 0.9221 29 1 -0.3633 0.5716 -0.8540 30 1 1.5775 0.7532 2.6468 31 1 2.8343 -0.3826 3.1925 32 1 3.2265 0.8666 1.9864 33 1 2.2564 -2.8360 -0.5176 34 1 3.7688 -2.1466 -1.1828 35 1 0.2220 -0.6185 -2.1081 36 1 1.8753 -0.8617 -3.8727 37 1 2.1831 -2.5002 -3.2491 38 1 0.5394 -4.2573 -3.4978 39 1 -1.3575 -5.1282 -4.7924 40 1 -2.8677 -1.6861 -8.9190 41 1 -2.1035 -1.1627 -6.3036 42 1 -0.2077 -0.3246 -4.9859 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000405751663.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:28 Heat of formation + Delta-G solvation = -36.245576 kcal Electronic energy + Delta-G solvation = -20898.934973 eV Core-core repulsion = 17842.889479 eV Total energy + Delta-G solvation = -3056.045495 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.94086 -37.71836 -35.57825 -33.81975 -33.02378 -31.01573 -29.41454 -29.15738 -27.75243 -25.95039 -24.40853 -23.21170 -21.54992 -20.99110 -19.86649 -19.67936 -17.29980 -16.20622 -15.99829 -15.68688 -15.43906 -15.16017 -14.37770 -14.11490 -13.87190 -13.54230 -13.29819 -12.81541 -12.65882 -12.43010 -12.37363 -12.00994 -11.95182 -11.84215 -11.61009 -11.35223 -11.10517 -10.97742 -10.91891 -10.83691 -10.58697 -10.46682 -10.31700 -9.75239 -9.56083 -9.40261 -9.14197 -8.13857 -7.45970 -7.30730 -6.77974 -4.35922 2.71718 3.05712 3.08046 3.11519 3.15979 3.85889 3.92051 4.41895 4.45024 4.56492 4.74196 4.91426 5.15870 5.24422 5.28283 5.43669 5.46406 5.52921 5.69304 5.72373 5.78614 5.82817 5.85135 5.89353 5.92736 6.03576 6.09356 6.27233 6.31675 6.37188 6.40852 6.80611 6.93819 7.06755 7.26129 7.35769 7.38015 7.60598 7.68082 7.88272 8.05053 8.12947 8.29814 8.63345 8.88949 8.97065 10.16820 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.039288 B = 0.003245 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.517862 B = 8627.435145 C = 8815.746327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.120 4.120 3 H 0.079 0.921 4 C 0.077 3.923 5 H 0.071 0.929 6 C -0.146 4.146 7 O -0.378 6.378 8 C 0.055 3.945 9 C 0.053 3.947 10 H 0.049 0.951 11 N -0.674 5.674 12 C 0.122 3.878 13 C -0.214 4.214 14 C -0.068 4.068 15 C -0.228 4.228 16 C 0.113 3.887 17 C -0.463 4.463 18 H 0.078 0.922 19 C 0.076 3.924 20 N -0.793 5.793 21 Si 0.906 3.094 22 H -0.260 1.260 23 H -0.272 1.272 24 H -0.275 1.275 25 C -0.166 4.166 26 C -0.095 4.095 27 H 0.077 0.923 28 H 0.053 0.947 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.346 0.654 36 H 0.020 0.980 37 H 0.061 0.939 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.279 0.721 41 H 0.116 0.884 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.924 5.324 12.466 14.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.139 4.139 3 H 0.097 0.903 4 C 0.019 3.981 5 H 0.089 0.911 6 C -0.203 4.203 7 O -0.297 6.297 8 C -0.022 4.022 9 C -0.058 4.058 10 H 0.067 0.933 11 N -0.309 5.309 12 C -0.006 4.006 13 C -0.216 4.216 14 C -0.087 4.087 15 C -0.248 4.248 16 C 0.110 3.890 17 C -0.492 4.492 18 H 0.096 0.904 19 C -0.142 4.142 20 N -0.419 5.419 21 Si 0.731 3.269 22 H -0.184 1.184 23 H -0.197 1.197 24 H -0.200 1.200 25 C -0.185 4.185 26 C -0.114 4.114 27 H 0.096 0.904 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.103 0.897 35 H 0.168 0.832 36 H 0.038 0.962 37 H 0.079 0.921 38 H 0.105 0.895 39 H 0.109 0.891 40 H 0.090 0.910 41 H 0.134 0.866 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 6.192 4.826 12.632 14.873 hybrid contribution -0.721 0.803 -1.132 1.564 sum 5.471 5.629 11.500 13.924 Atomic orbital electron populations 1.21727 0.93492 1.03630 1.01219 1.22656 0.97381 0.99395 0.94512 0.90305 1.23001 0.87782 0.93379 0.93902 0.91116 1.21806 1.02011 0.98814 0.97660 1.89087 1.35448 1.73913 1.31237 1.23453 0.98849 0.96866 0.83026 1.22873 0.93421 0.94958 0.94526 0.93287 1.60901 1.09700 1.44737 1.15564 1.20611 0.95706 0.97555 0.86722 1.18862 1.02348 0.94234 1.06132 1.20325 0.96708 0.94001 0.97651 1.20978 0.99534 0.97845 1.06397 1.17627 0.90597 0.91241 0.89520 1.19634 1.12939 1.09567 1.07085 0.90431 1.25912 0.98294 0.93609 0.96345 1.69835 1.34855 1.20872 1.16311 0.86297 0.82279 0.79373 0.78990 1.18374 1.19719 1.20020 1.21255 0.99237 0.95918 1.02095 1.20513 0.96689 0.96568 0.97658 0.90438 0.92795 0.92325 0.91251 0.92035 0.91992 0.90900 0.89667 0.83203 0.96216 0.92061 0.89494 0.89109 0.90966 0.86640 0.90002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 7.84 37.16 0.29 -1.25 16 2 C -0.12 -1.34 3.26 -89.05 -0.29 -1.63 16 3 H 0.08 0.82 7.87 -51.93 -0.41 0.41 16 4 C 0.08 0.87 3.47 -25.96 -0.09 0.78 16 5 H 0.07 0.80 7.87 -51.93 -0.41 0.39 16 6 C -0.15 -1.30 9.52 37.16 0.35 -0.95 16 7 O -0.38 -5.11 11.35 -35.23 -0.40 -5.51 16 8 C 0.06 0.72 7.00 37.93 0.27 0.99 16 9 C 0.05 0.69 3.39 -66.14 -0.22 0.46 16 10 H 0.05 0.64 7.97 -51.93 -0.41 0.23 16 11 N -0.67 -10.12 5.34 -106.34 -0.57 -10.69 16 12 C 0.12 2.08 5.65 -4.98 -0.03 2.05 16 13 C -0.21 -4.52 5.42 -104.33 -0.56 -5.09 16 14 C -0.07 -1.51 9.67 -39.66 -0.38 -1.90 16 15 C -0.23 -5.59 9.80 -38.87 -0.38 -5.97 16 16 C 0.11 2.99 5.57 -106.83 -0.60 2.39 16 17 C -0.46 -12.25 9.05 -37.74 -0.34 -12.59 16 18 H 0.08 1.99 7.91 -52.49 -0.42 1.57 16 19 C 0.08 1.90 5.14 -17.34 -0.09 1.81 16 20 N -0.79 -20.42 10.98 55.55 0.61 -19.81 16 21 Si 0.91 18.56 29.60 -169.99 -5.03 13.52 16 22 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 23 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 24 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 25 C -0.17 -4.25 8.70 -38.88 -0.34 -4.58 16 26 C -0.10 -2.16 9.67 -39.66 -0.38 -2.55 16 27 H 0.08 0.95 7.55 -51.93 -0.39 0.56 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.64 7.10 -51.93 -0.37 0.27 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 1.01 8.06 -51.93 -0.42 0.59 16 34 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.35 5.21 6.24 -39.29 -0.25 4.97 16 36 H 0.02 0.33 8.04 -51.93 -0.42 -0.09 16 37 H 0.06 1.01 7.84 -51.93 -0.41 0.60 16 38 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 39 H 0.09 2.12 8.06 -52.48 -0.42 1.69 16 40 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 41 H 0.12 3.07 6.18 -52.49 -0.32 2.74 16 42 H 0.08 1.68 8.06 -52.49 -0.42 1.26 16 LS Contribution 337.53 15.07 5.09 5.09 Total: -1.00 -26.96 337.53 -9.84 -36.79 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: -6.74 Total: 8.62 kcal Atomic # 6 Polarization: -25.23 SS G_CDS: -2.80 Total: -28.03 kcal Atomic # 7 Polarization: -30.54 SS G_CDS: 0.04 Total: -30.49 kcal Atomic # 8 Polarization: -5.11 SS G_CDS: -0.40 Total: -5.51 kcal Atomic # 14 Polarization: 18.56 SS G_CDS: -5.03 Total: 13.52 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -26.96 -9.84 -36.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405751663.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.547 kcal (2) G-P(sol) polarization free energy of solvation -26.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds