Wall clock time and date at job start Mon Mar 30 2020 07:42:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 110.56472 * 2 1 4 4 C 1.54476 * 110.51523 * 122.68325 * 2 1 3 5 5 H 1.08997 * 110.36827 * 23.78669 * 4 2 1 6 6 C 1.53002 * 110.37061 * 261.56506 * 4 2 1 7 7 O 1.44419 * 104.80335 * 142.61898 * 4 2 1 8 8 C 1.44427 * 105.27907 * 319.49040 * 7 4 2 9 9 C 1.54474 * 104.80078 * 40.51075 * 8 7 4 10 10 H 1.08996 * 110.51461 * 94.67158 * 9 8 7 11 11 N 1.46900 * 110.62495 * 217.31837 * 9 8 7 12 12 C 1.46895 * 111.00364 * 279.24072 * 11 9 8 13 13 C 1.50697 * 109.47327 * 179.97438 * 12 11 9 14 14 C 1.38634 * 119.75046 * 269.73245 * 13 12 11 15 15 C 1.37620 * 120.24705 * 179.72218 * 14 13 12 16 16 C 1.40715 * 119.74480 * 0.56618 * 15 14 13 17 17 C 1.41393 * 120.24284 * 179.68274 * 16 15 14 18 18 H 1.08000 * 120.00218 * 24.74304 * 17 16 15 19 19 C 1.39949 * 119.99831 * 204.74853 * 17 16 15 20 20 N 1.30817 * 120.00210 * 17.92602 * 19 17 16 21 21 Si 1.86808 * 119.99816 * 197.92646 * 19 17 16 22 22 H 1.48503 * 109.47048 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47009 * 120.00008 * 21 19 17 24 24 H 1.48498 * 109.46944 * 239.99921 * 21 19 17 25 25 C 1.40707 * 119.51130 * 359.70939 * 16 15 14 26 26 C 1.37620 * 119.74934 * 359.97438 * 25 16 15 27 27 H 1.08999 * 109.46883 * 176.20234 * 1 2 3 28 28 H 1.09001 * 109.46523 * 296.20445 * 1 2 3 29 29 H 1.08997 * 109.46785 * 56.20282 * 1 2 3 30 30 H 1.09002 * 109.47034 * 60.00025 * 6 4 2 31 31 H 1.09000 * 109.46786 * 179.97438 * 6 4 2 32 32 H 1.08995 * 109.46817 * 299.99982 * 6 4 2 33 33 H 1.09001 * 110.36809 * 281.67720 * 8 7 4 34 34 H 1.09000 * 110.37165 * 159.34325 * 8 7 4 35 35 H 1.00908 * 110.99981 * 155.28965 * 11 9 8 36 36 H 1.08994 * 109.47157 * 300.00448 * 12 11 9 37 37 H 1.09002 * 109.46836 * 60.00492 * 12 11 9 38 38 H 1.07995 * 119.87913 * 359.97305 * 14 13 12 39 39 H 1.08005 * 120.12445 * 180.27888 * 15 14 13 40 40 H 0.97002 * 120.00435 * 180.02562 * 20 19 17 41 41 H 1.07998 * 120.13185 * 179.97438 * 25 16 15 42 42 H 1.07989 * 119.88085 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9130 1.0205 0.0000 4 6 2.0714 -0.7813 1.2177 5 1 1.3287 -1.4970 1.5700 6 6 2.4551 0.1834 2.3416 7 8 3.2399 -1.4714 0.7236 8 6 2.8757 -1.9422 -0.5923 9 6 2.0714 -0.7813 -1.2182 10 1 2.7218 -0.1470 -1.8204 11 7 0.9631 -1.2991 -2.0315 12 6 1.4342 -1.7158 -3.3590 13 6 0.2723 -2.2406 -4.1625 14 6 -0.0460 -3.5890 -4.1118 15 6 -1.1085 -4.0782 -4.8369 16 6 -1.8654 -3.2063 -5.6411 17 6 -2.9550 -3.6988 -6.3957 18 1 -3.4640 -4.5993 -6.0849 19 6 -3.3739 -3.0196 -7.5454 20 7 -2.5773 -2.1572 -8.1223 21 14 -5.0706 -3.3447 -8.2562 22 1 -5.7702 -4.3565 -7.4243 23 1 -5.8537 -2.0829 -8.2647 24 1 -4.9364 -3.8534 -9.6448 25 6 -1.5296 -1.8407 -5.6894 26 6 -0.4671 -1.3723 -4.9508 27 1 -0.3633 -1.0254 -0.0681 28 1 -0.3632 0.4538 0.9221 29 1 -0.3633 0.5716 -0.8540 30 1 1.5775 0.7532 2.6468 31 1 2.8343 -0.3826 3.1925 32 1 3.2265 0.8666 1.9864 33 1 2.2564 -2.8360 -0.5176 34 1 3.7688 -2.1466 -1.1828 35 1 0.2220 -0.6185 -2.1081 36 1 1.8753 -0.8617 -3.8727 37 1 2.1831 -2.5002 -3.2491 38 1 0.5394 -4.2573 -3.4978 39 1 -1.3575 -5.1282 -4.7924 40 1 -2.8677 -1.6861 -8.9190 41 1 -2.1035 -1.1627 -6.3036 42 1 -0.2077 -0.3246 -4.9859 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000405751663.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:28 Heat of formation + Delta-G solvation = -50.535833 kcal Electronic energy + Delta-G solvation = -20899.554645 eV Core-core repulsion = 17842.889479 eV Total energy + Delta-G solvation = -3056.665167 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.93126 -39.48632 -36.89395 -35.47621 -34.11566 -32.39932 -31.15894 -30.58855 -28.84387 -27.55545 -25.31651 -24.77282 -22.87758 -22.49685 -21.61116 -20.66601 -19.20668 -17.43356 -17.07783 -16.94763 -16.67547 -16.37373 -15.89299 -15.56315 -15.31873 -15.20422 -14.45889 -14.17677 -13.83070 -13.79132 -13.50894 -13.38427 -13.28594 -13.03655 -12.84004 -12.71583 -12.67680 -12.44493 -12.31946 -12.00061 -11.87052 -11.73838 -11.48280 -11.30068 -11.22038 -10.99710 -10.72437 -9.42743 -9.28492 -9.15336 -8.63678 -6.32294 0.94781 1.17458 1.37978 1.49450 1.53224 2.21080 2.68393 2.94077 3.39534 3.50812 3.70362 3.82946 3.98744 4.24004 4.27196 4.32491 4.40444 4.45685 4.55847 4.59706 4.62446 4.67263 4.72299 4.81690 4.87418 4.94228 5.00259 5.05989 5.08838 5.12921 5.17680 5.32352 5.38866 5.43928 5.49123 5.72779 5.84113 5.97550 6.11986 6.17969 6.26412 6.41597 6.50331 6.72172 6.95926 7.05766 8.33700 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.039288 B = 0.003245 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.517862 B = 8627.435145 C = 8815.746327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.115 4.115 3 H 0.092 0.908 4 C 0.072 3.928 5 H 0.067 0.933 6 C -0.142 4.142 7 O -0.393 6.393 8 C 0.056 3.944 9 C 0.053 3.947 10 H 0.054 0.946 11 N -0.676 5.676 12 C 0.129 3.871 13 C -0.199 4.199 14 C -0.072 4.072 15 C -0.245 4.245 16 C 0.080 3.920 17 C -0.503 4.503 18 H 0.072 0.928 19 C 0.035 3.965 20 N -0.826 5.826 21 Si 0.981 3.019 22 H -0.259 1.259 23 H -0.263 1.263 24 H -0.266 1.266 25 C -0.189 4.189 26 C -0.097 4.097 27 H 0.059 0.941 28 H 0.072 0.928 29 H 0.056 0.944 30 H 0.087 0.913 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.093 0.907 35 H 0.347 0.653 36 H 0.029 0.971 37 H 0.071 0.929 38 H 0.112 0.888 39 H 0.093 0.907 40 H 0.287 0.713 41 H 0.098 0.902 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.449 6.296 13.622 16.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.134 4.134 3 H 0.110 0.890 4 C 0.014 3.986 5 H 0.085 0.915 6 C -0.199 4.199 7 O -0.312 6.312 8 C -0.022 4.022 9 C -0.057 4.057 10 H 0.072 0.928 11 N -0.311 5.311 12 C 0.001 3.999 13 C -0.200 4.200 14 C -0.090 4.090 15 C -0.264 4.264 16 C 0.077 3.923 17 C -0.532 4.532 18 H 0.090 0.910 19 C -0.179 4.179 20 N -0.452 5.452 21 Si 0.801 3.199 22 H -0.183 1.183 23 H -0.188 1.188 24 H -0.191 1.191 25 C -0.208 4.208 26 C -0.116 4.116 27 H 0.078 0.922 28 H 0.091 0.909 29 H 0.075 0.925 30 H 0.106 0.894 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.111 0.889 35 H 0.169 0.831 36 H 0.047 0.953 37 H 0.090 0.910 38 H 0.130 0.870 39 H 0.111 0.889 40 H 0.098 0.902 41 H 0.116 0.884 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 6.733 5.799 13.807 16.419 hybrid contribution -0.744 0.522 -1.364 1.639 sum 5.990 6.321 12.442 15.187 Atomic orbital electron populations 1.21679 0.93222 1.02618 1.02190 1.22654 0.97507 0.99742 0.93460 0.88959 1.23169 0.87174 0.93636 0.94588 0.91531 1.21812 1.02891 0.98414 0.96791 1.89081 1.36503 1.74239 1.31357 1.23432 0.99050 0.96454 0.83245 1.22904 0.92756 0.95197 0.94856 0.92831 1.60792 1.10511 1.45381 1.14402 1.20510 0.93958 0.98181 0.87281 1.19288 1.02297 0.93630 1.04787 1.20630 0.96093 0.95041 0.97270 1.21171 1.00382 0.97953 1.06915 1.17961 0.91558 0.92082 0.90655 1.19847 1.14295 1.10509 1.08579 0.90982 1.26735 1.01953 0.93085 0.96136 1.69879 1.36611 1.21774 1.16974 0.85186 0.77033 0.79396 0.78246 1.18300 1.18799 1.19066 1.21225 1.00684 0.95563 1.03350 1.20765 0.95833 0.97996 0.97018 0.92238 0.90902 0.92459 0.89411 0.91833 0.91881 0.92034 0.88855 0.83148 0.95306 0.91039 0.87037 0.88924 0.90206 0.88403 0.87830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 7.84 71.98 0.56 -2.13 16 2 C -0.11 -2.26 3.26 -9.78 -0.03 -2.29 16 3 H 0.09 1.61 7.87 -2.39 -0.02 1.59 16 4 C 0.07 1.46 3.47 31.10 0.11 1.56 16 5 H 0.07 1.40 7.87 -2.39 -0.02 1.38 16 6 C -0.14 -2.16 9.52 71.98 0.69 -1.48 16 7 O -0.39 -9.89 11.35 -148.98 -1.69 -11.58 16 8 C 0.06 1.35 7.00 72.48 0.51 1.85 16 9 C 0.05 1.25 3.39 45.93 0.16 1.41 16 10 H 0.05 1.24 7.97 -2.39 -0.02 1.23 16 11 N -0.68 -18.85 5.34 -490.36 -2.62 -21.47 16 12 C 0.13 4.09 5.65 85.56 0.48 4.57 16 13 C -0.20 -8.12 5.42 -19.67 -0.11 -8.23 16 14 C -0.07 -3.13 9.67 22.22 0.21 -2.92 16 15 C -0.24 -12.21 9.80 22.73 0.22 -11.99 16 16 C 0.08 4.37 5.57 -21.29 -0.12 4.25 16 17 C -0.50 -27.64 9.05 23.46 0.21 -27.43 16 18 H 0.07 3.86 7.91 -2.91 -0.02 3.84 16 19 C 0.04 1.81 5.14 85.26 0.44 2.25 16 20 N -0.83 -43.62 10.98 21.83 0.24 -43.38 16 21 Si 0.98 38.61 29.60 68.60 2.03 40.64 16 22 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 23 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 24 H -0.27 -10.00 7.11 99.48 0.71 -9.29 16 25 C -0.19 -9.92 8.70 22.73 0.20 -9.73 16 26 C -0.10 -4.38 9.67 22.22 0.21 -4.16 16 27 H 0.06 1.37 7.55 -2.39 -0.02 1.36 16 28 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.06 1.12 7.10 -2.39 -0.02 1.10 16 30 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.06 0.95 8.14 -2.39 -0.02 0.94 16 33 H 0.06 1.63 8.06 -2.39 -0.02 1.61 16 34 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.35 9.74 6.24 -89.69 -0.56 9.18 16 36 H 0.03 0.88 8.04 -2.39 -0.02 0.86 16 37 H 0.07 2.15 7.84 -2.39 -0.02 2.14 16 38 H 0.11 4.27 8.06 -2.91 -0.02 4.25 16 39 H 0.09 4.44 8.06 -2.91 -0.02 4.41 16 40 H 0.29 13.64 8.30 -92.71 -0.77 12.87 16 41 H 0.10 5.41 6.18 -2.91 -0.02 5.39 16 42 H 0.10 4.13 8.06 -2.92 -0.02 4.10 16 Total: -1.00 -58.92 337.53 2.14 -56.78 By element: Atomic # 1 Polarization: 33.05 SS G_CDS: 0.43 Total: 33.48 kcal Atomic # 6 Polarization: -58.22 SS G_CDS: 3.75 Total: -54.47 kcal Atomic # 7 Polarization: -62.47 SS G_CDS: -2.38 Total: -64.85 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: -1.69 Total: -11.58 kcal Atomic # 14 Polarization: 38.61 SS G_CDS: 2.03 Total: 40.64 kcal Total: -58.92 2.14 -56.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405751663.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.241 kcal (2) G-P(sol) polarization free energy of solvation -58.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds