Wall clock time and date at job start Mon Mar 30 2020 07:23:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86805 * 119.99854 * 2 1 4 4 H 1.48502 * 109.47108 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46840 * 300.00064 * 3 2 1 6 6 H 1.48499 * 109.47207 * 60.00134 * 3 2 1 7 7 C 1.37883 * 120.00383 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99853 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99841 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.46488 * 60.00399 * 9 7 2 11 11 O 1.42899 * 109.47441 * 300.00895 * 9 7 2 12 12 C 1.52989 * 109.47103 * 180.02562 * 9 7 2 13 13 O 1.42900 * 109.47428 * 185.00292 * 12 9 7 14 14 C 1.35940 * 117.00471 * 180.02562 * 13 12 9 15 15 C 1.38705 * 120.04784 * 0.23449 * 14 13 12 16 16 C 1.38148 * 119.96940 * 180.27566 * 15 14 13 17 17 C 1.38374 * 120.06583 * 359.76706 * 16 15 14 18 18 Cl 1.73596 * 119.95324 * 179.97438 * 17 16 15 19 19 C 1.38345 * 120.09259 * 359.97438 * 17 16 15 20 20 C 1.38258 * 120.03140 * 359.97438 * 19 17 16 21 21 Cl 1.73599 * 120.03112 * 180.02562 * 20 19 17 22 22 H 0.96996 * 120.00723 * 0.02562 * 1 2 3 23 23 H 0.96702 * 113.99649 * 299.99644 * 11 9 7 24 24 H 1.09010 * 109.47277 * 65.00642 * 12 9 7 25 25 H 1.09001 * 109.47794 * 305.00207 * 12 9 7 26 26 H 1.07998 * 120.01299 * 0.02562 * 15 14 13 27 27 H 1.07999 * 119.96239 * 179.74134 * 16 15 14 28 28 H 1.08002 * 119.98216 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8902 2.3965 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 0.6242 -2.5567 -0.8903 11 8 0.4298 -2.5752 1.1664 12 6 2.2453 -3.6620 -0.0005 13 8 1.5349 -4.8963 -0.1180 14 6 2.2757 -6.0359 -0.1330 15 6 3.6574 -5.9675 -0.0317 16 6 4.4091 -7.1264 -0.0529 17 6 3.7848 -8.3557 -0.1702 18 17 4.7323 -9.8100 -0.1971 19 6 2.4065 -8.4273 -0.2660 20 6 1.6503 -7.2701 -0.2441 21 17 -0.0793 -7.3601 -0.3637 22 1 -0.4851 0.8399 -0.0004 23 1 0.9222 -2.5300 1.9975 24 1 2.8115 -3.6560 0.9310 25 1 2.9295 -3.5552 -0.8423 26 1 4.1455 -5.0085 0.0595 27 1 5.4852 -7.0727 0.0218 28 1 1.9210 -9.3878 -0.3570 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041296821.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:24 Heat of formation + Delta-G solvation = -83.439636 kcal Electronic energy + Delta-G solvation = -16414.304578 eV Core-core repulsion = 13289.270965 eV Total energy + Delta-G solvation = -3125.033613 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 276.011 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.10544 -37.79168 -36.60849 -36.09481 -35.38781 -32.26895 -31.08200 -30.07123 -28.61916 -25.34471 -23.11302 -22.35464 -20.79166 -18.41824 -17.17775 -16.39704 -16.21525 -15.69836 -14.90216 -14.71529 -14.50807 -14.08911 -13.88548 -13.18744 -12.87100 -12.74322 -12.41763 -12.14054 -11.62375 -11.23232 -11.13117 -11.03066 -10.98656 -10.89184 -10.72839 -10.39194 -10.19228 -9.20529 -9.06014 -8.73947 -8.37838 -8.04062 -6.16355 -4.37739 0.95548 1.08905 1.86475 2.35899 3.18666 3.25989 3.28753 3.40325 3.48109 4.28233 4.62798 4.76810 4.95199 5.11353 5.24598 5.51220 5.62255 5.71169 5.72408 5.96135 6.02783 6.21417 6.31735 6.47217 7.44117 7.57567 7.70578 7.93743 8.65004 9.24384 9.40798 10.88179 Molecular weight = 276.01amu Principal moments of inertia in cm(-1) A = 0.028539 B = 0.004150 C = 0.003676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.866532 B = 6745.862901 C = 7614.795399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.082 3.918 3 Si 0.896 3.104 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.578 4.578 8 H 0.060 0.940 9 C 0.237 3.763 10 H 0.068 0.932 11 O -0.556 6.556 12 C 0.029 3.971 13 O -0.286 6.286 14 C 0.161 3.839 15 C -0.193 4.193 16 C -0.062 4.062 17 C -0.077 4.077 18 Cl -0.072 7.072 19 C -0.064 4.064 20 C -0.070 4.070 21 Cl -0.045 7.045 22 H 0.263 0.737 23 H 0.345 0.655 24 H 0.056 0.944 25 H 0.062 0.938 26 H 0.148 0.852 27 H 0.138 0.862 28 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.658 -15.485 -0.026 17.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C -0.126 4.126 3 Si 0.723 3.277 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.616 4.616 8 H 0.078 0.922 9 C 0.179 3.821 10 H 0.085 0.915 11 O -0.358 6.358 12 C -0.046 4.046 13 O -0.198 6.198 14 C 0.111 3.889 15 C -0.213 4.213 16 C -0.081 4.081 17 C -0.104 4.104 18 Cl -0.043 7.043 19 C -0.084 4.084 20 C -0.098 4.098 21 Cl -0.016 7.016 22 H 0.073 0.927 23 H 0.189 0.811 24 H 0.075 0.925 25 H 0.081 0.919 26 H 0.166 0.834 27 H 0.156 0.844 28 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 6.703 -15.502 -0.517 16.897 hybrid contribution 1.187 0.904 0.343 1.531 sum 7.890 -14.598 -0.174 16.595 Atomic orbital electron populations 1.70088 1.06003 1.26800 1.45764 1.25021 0.94768 0.99325 0.93489 0.86502 0.80052 0.83278 0.77885 1.19603 1.20683 1.20687 1.21421 0.93197 0.90558 1.56382 0.92200 1.19466 0.88129 0.87250 0.87286 0.91452 1.86634 1.37964 1.96107 1.15103 1.24358 0.98152 0.81729 1.00346 1.86396 1.35496 1.12679 1.85196 1.19037 0.90098 0.87327 0.92400 1.21302 0.92167 0.99969 1.07817 1.20899 1.00589 0.89918 0.96732 1.20470 0.91202 0.87826 1.10934 1.98353 1.72153 1.36481 1.97316 1.20667 0.91484 0.97649 0.98585 1.20021 0.86355 0.91743 1.11650 1.98384 1.08159 1.98500 1.96563 0.92670 0.81106 0.92549 0.91929 0.83429 0.84389 0.83731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.45 12.84 55.43 0.71 -23.74 15 2 C 0.08 2.19 5.40 -17.82 -0.10 2.09 15 3 Si 0.90 20.24 29.54 -169.99 -5.02 15.22 15 4 H -0.27 -5.97 7.11 56.52 0.40 -5.57 15 5 H -0.28 -6.33 7.11 56.52 0.40 -5.93 15 6 H -0.28 -6.33 7.11 56.52 0.40 -5.93 15 7 C -0.58 -14.98 8.76 -34.44 -0.30 -15.28 15 8 H 0.06 1.48 7.74 -52.49 -0.41 1.07 15 9 C 0.24 5.80 3.11 -27.89 -0.09 5.72 15 10 H 0.07 1.85 8.14 -51.93 -0.42 1.42 15 11 O -0.56 -14.14 12.70 -40.11 -0.51 -14.65 15 12 C 0.03 0.55 4.31 37.15 0.16 0.71 15 13 O -0.29 -5.50 9.56 -24.43 -0.23 -5.73 15 14 C 0.16 2.58 6.68 -39.20 -0.26 2.32 15 15 C -0.19 -2.61 9.04 -39.44 -0.36 -2.96 15 16 C -0.06 -0.72 9.82 -39.56 -0.39 -1.11 15 17 C -0.08 -0.91 6.32 -39.49 -0.25 -1.16 15 18 Cl -0.07 -0.74 28.95 -51.86 -1.50 -2.24 15 19 C -0.06 -0.80 9.61 -39.53 -0.38 -1.18 15 20 C -0.07 -1.03 6.33 -39.36 -0.25 -1.28 15 21 Cl -0.04 -0.68 28.50 -51.86 -1.48 -2.16 15 22 H 0.26 7.11 8.31 -40.82 -0.34 6.77 15 23 H 0.35 7.62 9.04 45.56 0.41 8.03 15 24 H 0.06 1.00 7.65 -51.92 -0.40 0.60 15 25 H 0.06 1.13 7.67 -51.93 -0.40 0.73 15 26 H 0.15 1.85 6.30 -52.49 -0.33 1.52 15 27 H 0.14 1.26 8.06 -52.49 -0.42 0.84 15 28 H 0.14 1.49 8.06 -52.49 -0.42 1.07 15 LS Contribution 283.76 15.07 4.28 4.28 Total: -1.00 -29.03 283.76 -7.49 -36.52 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -1.52 Total: 4.64 kcal Atomic # 6 Polarization: -9.92 SS G_CDS: -2.21 Total: -12.13 kcal Atomic # 7 Polarization: -24.45 SS G_CDS: 0.71 Total: -23.74 kcal Atomic # 8 Polarization: -19.63 SS G_CDS: -0.74 Total: -20.38 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Atomic # 17 Polarization: -1.42 SS G_CDS: -2.98 Total: -4.40 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -29.03 -7.49 -36.52 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041296821.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.922 kcal (2) G-P(sol) polarization free energy of solvation -29.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds