Wall clock time and date at job start Mon Mar 30 2020 07:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38888 * 126.65256 * 2 1 4 4 C 1.41166 * 126.31594 * 0.04157 * 3 2 1 5 5 H 1.08000 * 119.99736 * 6.96689 * 4 3 2 6 6 C 1.39674 * 119.99631 * 186.97574 * 4 3 2 7 7 N 1.31039 * 119.99946 * 191.56667 * 6 4 3 8 8 Si 1.86799 * 120.00575 * 11.55960 * 6 4 3 9 9 H 1.48497 * 109.47290 * 270.00762 * 8 6 4 10 10 H 1.48505 * 109.46634 * 30.00766 * 8 6 4 11 11 H 1.48498 * 109.47282 * 150.00174 * 8 6 4 12 12 N 1.35568 * 107.36496 * 179.77171 * 3 2 1 13 13 C 1.32289 * 109.03934 * 0.22763 * 12 3 2 14 14 S 1.76382 * 141.21882 * 179.97438 * 13 12 3 15 15 C 1.75736 * 90.74395 * 179.97438 * 14 13 12 16 16 C 1.30809 * 109.93947 * 0.02562 * 15 14 13 17 17 C 1.50698 * 121.81619 * 179.97438 * 16 15 14 18 18 F 1.39895 * 109.47300 * 233.79478 * 17 16 15 19 19 F 1.39900 * 109.47287 * 353.79336 * 17 16 15 20 20 F 1.39901 * 109.47088 * 113.79152 * 17 16 15 21 21 N 1.35644 * 109.65870 * 359.97438 * 13 12 3 22 22 H 1.08995 * 109.47280 * 93.51796 * 1 2 3 23 23 H 1.09000 * 109.47217 * 213.52128 * 1 2 3 24 24 H 1.09003 * 109.46696 * 333.51798 * 1 2 3 25 25 H 0.96999 * 119.99606 * 354.93091 * 7 6 4 26 26 H 1.08000 * 125.02762 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3361 1.1143 0.0000 4 6 1.9226 2.4640 0.0008 5 1 0.8768 2.7083 0.1150 6 6 2.8661 3.4834 -0.1462 7 7 2.5256 4.7286 0.0790 8 14 4.6131 3.0719 -0.6636 9 1 5.4404 2.8193 0.5434 10 1 4.6029 1.8584 -1.5196 11 1 5.1848 4.2106 -1.4262 12 7 3.6157 0.6665 0.0052 13 6 3.6100 -0.6564 0.0033 14 16 4.7088 -2.0361 0.0059 15 6 3.3484 -3.1487 -0.0004 16 6 2.2246 -2.4792 -0.0044 17 6 0.8867 -3.1727 -0.0108 18 9 0.1187 -2.6945 -1.0778 19 9 1.0767 -4.5513 -0.1542 20 9 0.2227 -2.9163 1.1936 21 7 2.3306 -1.1072 -0.0025 22 1 -0.3633 -0.0631 -1.0257 23 1 -0.3634 -0.8567 0.5675 24 1 -0.3633 0.9199 0.4583 25 1 1.6022 4.9509 0.2758 26 1 3.4284 -4.2257 -0.0009 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075395708.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:28:06 Heat of formation + Delta-G solvation = -71.268651 kcal Electronic energy + Delta-G solvation = -19483.603195 eV Core-core repulsion = 15854.009922 eV Total energy + Delta-G solvation = -3629.593273 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 276.024 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -50.26630 -47.81439 -47.66168 -41.49418 -36.38180 -33.43150 -31.33586 -30.22603 -26.99545 -26.87470 -24.30987 -22.63597 -20.29817 -19.76694 -18.59696 -18.58924 -17.83622 -17.52674 -16.81757 -15.41005 -14.91176 -14.66828 -14.48861 -14.16555 -14.15189 -13.88639 -13.83995 -13.51895 -13.15655 -12.70697 -12.39488 -12.18316 -11.86009 -11.63741 -11.60856 -11.08353 -10.74640 -10.36269 -9.80342 -9.64401 -9.15355 -8.52961 -8.06286 -7.24884 -7.04800 -4.54440 1.01410 1.26594 1.68292 2.54908 2.70080 3.12268 3.41295 3.53760 3.68041 3.92646 3.98354 4.10024 4.27887 4.34764 5.07259 5.25163 5.26945 5.69378 5.96684 6.30474 6.33373 6.56848 6.69986 7.21164 7.57125 7.63688 8.10483 8.29442 8.65334 8.93306 10.12769 Molecular weight = 276.02amu Principal moments of inertia in cm(-1) A = 0.025568 B = 0.007629 C = 0.006145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.873913 B = 3669.150640 C = 4555.391295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 C -0.195 4.195 3 C 0.221 3.779 4 C -0.479 4.479 5 H 0.086 0.914 6 C 0.050 3.950 7 N -0.822 5.822 8 Si 1.107 2.893 9 H -0.281 1.281 10 H -0.262 1.262 11 H -0.311 1.311 12 N -0.484 5.484 13 C 0.136 3.864 14 S 0.192 5.808 15 C -0.219 4.219 16 C 0.006 3.994 17 C 0.535 3.465 18 F -0.166 7.166 19 F -0.168 7.168 20 F -0.168 7.168 21 N -0.374 5.374 22 H 0.047 0.953 23 H 0.039 0.961 24 H 0.071 0.929 25 H 0.282 0.718 26 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.101 -15.273 -0.503 15.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.302 4.302 3 C 0.099 3.901 4 C -0.512 4.512 5 H 0.104 0.896 6 C -0.170 4.170 7 N -0.446 5.446 8 Si 0.936 3.064 9 H -0.208 1.208 10 H -0.187 1.187 11 H -0.241 1.241 12 N -0.215 5.215 13 C -0.227 4.227 14 S 0.443 5.557 15 C -0.361 4.361 16 C -0.112 4.112 17 C 0.478 3.522 18 F -0.147 7.147 19 F -0.150 7.150 20 F -0.149 7.149 21 N -0.057 5.057 22 H 0.065 0.935 23 H 0.058 0.942 24 H 0.090 0.910 25 H 0.093 0.907 26 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 3.285 -14.105 -0.724 14.501 hybrid contribution -4.081 -1.161 0.390 4.261 sum -0.797 -15.267 -0.334 15.291 Atomic orbital electron populations 1.19734 0.88274 1.01290 1.00168 1.21125 0.92713 0.81955 1.34422 1.18375 0.84666 0.92991 0.94022 1.19740 0.97042 0.87944 1.46512 0.89614 1.27266 1.07607 0.91878 0.90212 1.70708 1.21781 1.19924 1.32167 0.82898 0.71612 0.73522 0.78343 1.20763 1.18743 1.24127 1.70541 1.23100 1.02420 1.25465 1.25738 0.86162 0.96752 1.14003 1.84188 1.02043 0.88408 1.81014 1.24526 0.94274 1.04973 1.12364 1.18611 0.94071 0.84510 1.13976 1.17502 0.83869 0.76350 0.74511 1.93258 1.77167 1.87876 1.56386 1.93181 1.95234 1.30968 1.95597 1.93239 1.82248 1.93660 1.45734 1.42645 1.08743 1.01688 1.52612 0.93478 0.94223 0.91043 0.90681 0.78832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.74 8.91 36.00 0.32 -0.42 15 2 C -0.19 -4.62 7.32 -79.58 -0.58 -5.21 15 3 C 0.22 5.86 6.35 -84.86 -0.54 5.32 15 4 C -0.48 -13.15 9.51 -37.94 -0.36 -13.51 15 5 H 0.09 2.34 7.39 -52.49 -0.39 1.95 15 6 C 0.05 1.36 5.51 -17.35 -0.10 1.26 15 7 N -0.82 -22.76 13.67 55.53 0.76 -22.00 15 8 Si 1.11 27.32 26.36 -169.99 -4.48 22.84 15 9 H -0.28 -6.90 7.11 56.52 0.40 -6.50 15 10 H -0.26 -6.48 6.22 56.52 0.35 -6.13 15 11 H -0.31 -7.46 7.11 56.52 0.40 -7.05 15 12 N -0.48 -12.45 6.53 -10.92 -0.07 -12.53 15 13 C 0.14 3.03 8.89 -88.31 -0.79 2.24 15 14 S 0.19 3.00 23.37 -107.50 -2.51 0.49 15 15 C -0.22 -3.05 10.36 29.07 0.30 -2.75 15 16 C 0.01 0.11 6.18 -81.66 -0.50 -0.39 15 17 C 0.54 8.25 2.93 36.00 0.11 8.35 15 18 F -0.17 -2.71 15.86 2.25 0.04 -2.68 15 19 F -0.17 -2.15 16.26 2.25 0.04 -2.11 15 20 F -0.17 -2.69 15.69 2.25 0.04 -2.65 15 21 N -0.37 -8.08 3.14 -54.34 -0.17 -8.25 15 22 H 0.05 0.91 8.14 -51.93 -0.42 0.49 15 23 H 0.04 0.73 5.76 -51.93 -0.30 0.44 15 24 H 0.07 1.44 7.38 -51.93 -0.38 1.06 15 25 H 0.28 7.50 8.73 -40.82 -0.36 7.14 15 26 H 0.19 1.88 7.52 -52.49 -0.39 1.49 15 LS Contribution 252.20 15.07 3.80 3.80 Total: -1.00 -29.52 252.20 -5.80 -35.32 By element: Atomic # 1 Polarization: -6.03 SS G_CDS: -1.09 Total: -7.12 kcal Atomic # 6 Polarization: -2.97 SS G_CDS: -2.14 Total: -5.11 kcal Atomic # 7 Polarization: -43.29 SS G_CDS: 0.52 Total: -42.77 kcal Atomic # 9 Polarization: -7.55 SS G_CDS: 0.11 Total: -7.44 kcal Atomic # 14 Polarization: 27.32 SS G_CDS: -4.48 Total: 22.84 kcal Atomic # 16 Polarization: 3.00 SS G_CDS: -2.51 Total: 0.49 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -29.52 -5.80 -35.32 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075395708.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.952 kcal (2) G-P(sol) polarization free energy of solvation -29.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds