Wall clock time and date at job start Mon Mar 30 2020 07:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38888 * 126.65256 * 2 1 4 4 C 1.41166 * 126.31594 * 0.04157 * 3 2 1 5 5 H 1.08000 * 119.99736 * 6.96689 * 4 3 2 6 6 C 1.39674 * 119.99631 * 186.97574 * 4 3 2 7 7 N 1.31039 * 119.99946 * 191.56667 * 6 4 3 8 8 Si 1.86799 * 120.00575 * 11.55960 * 6 4 3 9 9 H 1.48497 * 109.47290 * 270.00762 * 8 6 4 10 10 H 1.48505 * 109.46634 * 30.00766 * 8 6 4 11 11 H 1.48498 * 109.47282 * 150.00174 * 8 6 4 12 12 N 1.35568 * 107.36496 * 179.77171 * 3 2 1 13 13 C 1.32289 * 109.03934 * 0.22763 * 12 3 2 14 14 S 1.76382 * 141.21882 * 179.97438 * 13 12 3 15 15 C 1.75736 * 90.74395 * 179.97438 * 14 13 12 16 16 C 1.30809 * 109.93947 * 0.02562 * 15 14 13 17 17 C 1.50698 * 121.81619 * 179.97438 * 16 15 14 18 18 F 1.39895 * 109.47300 * 233.79478 * 17 16 15 19 19 F 1.39900 * 109.47287 * 353.79336 * 17 16 15 20 20 F 1.39901 * 109.47088 * 113.79152 * 17 16 15 21 21 N 1.35644 * 109.65870 * 359.97438 * 13 12 3 22 22 H 1.08995 * 109.47280 * 93.51796 * 1 2 3 23 23 H 1.09000 * 109.47217 * 213.52128 * 1 2 3 24 24 H 1.09003 * 109.46696 * 333.51798 * 1 2 3 25 25 H 0.96999 * 119.99606 * 354.93091 * 7 6 4 26 26 H 1.08000 * 125.02762 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3361 1.1143 0.0000 4 6 1.9226 2.4640 0.0008 5 1 0.8768 2.7083 0.1150 6 6 2.8661 3.4834 -0.1462 7 7 2.5256 4.7286 0.0790 8 14 4.6131 3.0719 -0.6636 9 1 5.4404 2.8193 0.5434 10 1 4.6029 1.8584 -1.5196 11 1 5.1848 4.2106 -1.4262 12 7 3.6157 0.6665 0.0052 13 6 3.6100 -0.6564 0.0033 14 16 4.7088 -2.0361 0.0059 15 6 3.3484 -3.1487 -0.0004 16 6 2.2246 -2.4792 -0.0044 17 6 0.8867 -3.1727 -0.0108 18 9 0.1187 -2.6945 -1.0778 19 9 1.0767 -4.5513 -0.1542 20 9 0.2227 -2.9163 1.1936 21 7 2.3306 -1.1072 -0.0025 22 1 -0.3633 -0.0631 -1.0257 23 1 -0.3634 -0.8567 0.5675 24 1 -0.3633 0.9199 0.4583 25 1 1.6022 4.9509 0.2758 26 1 3.4284 -4.2257 -0.0009 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075395708.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:28:06 Heat of formation + Delta-G solvation = -88.483910 kcal Electronic energy + Delta-G solvation = -19484.349705 eV Core-core repulsion = 15854.009922 eV Total energy + Delta-G solvation = -3630.339783 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 276.024 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -51.45184 -48.95087 -48.89698 -43.15404 -37.96636 -35.35114 -33.05443 -31.86806 -28.68073 -28.29561 -26.02665 -24.12590 -22.09479 -21.22286 -19.90889 -19.80406 -19.68706 -19.00652 -18.20676 -17.03396 -16.51933 -16.03050 -15.73794 -15.67561 -15.33490 -15.17923 -15.08575 -15.03490 -14.79164 -14.35016 -14.06342 -13.93509 -13.42186 -13.36364 -13.29802 -12.60686 -12.40536 -12.12278 -11.66490 -11.30064 -11.12211 -10.34238 -9.82746 -9.27439 -8.63634 -6.55650 -0.31340 -0.17245 0.31059 1.04008 1.25323 1.45293 1.55912 1.70634 1.98993 2.05166 2.39862 2.41795 2.89643 3.05884 3.23201 3.57907 4.06775 4.26689 4.30780 4.57178 4.68825 4.90277 5.00349 5.41024 5.54981 5.84847 6.19881 6.40304 6.73593 7.07675 8.10623 Molecular weight = 276.02amu Principal moments of inertia in cm(-1) A = 0.025568 B = 0.007629 C = 0.006145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.873913 B = 3669.150640 C = 4555.391295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 C -0.185 4.185 3 C 0.189 3.811 4 C -0.512 4.512 5 H 0.067 0.933 6 C 0.019 3.981 7 N -0.855 5.855 8 Si 1.144 2.856 9 H -0.283 1.283 10 H -0.266 1.266 11 H -0.306 1.306 12 N -0.525 5.525 13 C 0.103 3.897 14 S 0.268 5.732 15 C -0.162 4.162 16 C -0.039 4.039 17 C 0.544 3.456 18 F -0.173 7.173 19 F -0.147 7.147 20 F -0.173 7.173 21 N -0.383 5.383 22 H 0.056 0.944 23 H 0.058 0.942 24 H 0.064 0.936 25 H 0.277 0.723 26 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.010 -19.584 -0.661 19.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.294 4.294 3 C 0.066 3.934 4 C -0.546 4.546 5 H 0.085 0.915 6 C -0.194 4.194 7 N -0.481 5.481 8 Si 0.971 3.029 9 H -0.209 1.209 10 H -0.192 1.192 11 H -0.235 1.235 12 N -0.257 5.257 13 C -0.259 4.259 14 S 0.520 5.480 15 C -0.302 4.302 16 C -0.154 4.154 17 C 0.487 3.513 18 F -0.155 7.155 19 F -0.128 7.128 20 F -0.154 7.154 21 N -0.065 5.065 22 H 0.075 0.925 23 H 0.077 0.923 24 H 0.083 0.917 25 H 0.087 0.913 26 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 4.395 -18.498 -0.881 19.033 hybrid contribution -4.380 -0.350 0.457 4.417 sum 0.015 -18.848 -0.424 18.853 Atomic orbital electron populations 1.19763 0.86528 1.01770 1.01006 1.21501 0.93972 0.82537 1.31382 1.18486 0.86106 0.93311 0.95498 1.19643 0.96292 0.89233 1.49453 0.91458 1.27990 1.09620 0.91797 0.90016 1.70745 1.21496 1.20338 1.35551 0.82400 0.69441 0.73106 0.77923 1.20942 1.19166 1.23538 1.70348 1.22818 1.04694 1.27861 1.26803 0.88417 0.97334 1.13338 1.84113 1.00089 0.84716 1.79057 1.25447 0.92636 1.07264 1.04901 1.19023 0.96212 0.82847 1.17356 1.17242 0.82944 0.77029 0.74117 1.93249 1.77310 1.88152 1.56751 1.93226 1.95054 1.29069 1.95470 1.93233 1.82298 1.93807 1.46054 1.42729 1.08136 1.03136 1.52497 0.92499 0.92349 0.91706 0.91305 0.73354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -1.32 8.91 71.24 0.63 -0.68 15 2 C -0.18 -8.74 7.32 41.74 0.31 -8.44 15 3 C 0.19 10.28 6.35 39.44 0.25 10.53 15 4 C -0.51 -29.65 9.51 23.34 0.22 -29.43 15 5 H 0.07 3.96 7.39 -2.91 -0.02 3.94 15 6 C 0.02 1.09 5.51 85.16 0.47 1.56 15 7 N -0.86 -49.91 13.67 21.79 0.30 -49.62 15 8 Si 1.14 57.43 26.36 68.60 1.81 59.24 15 9 H -0.28 -14.00 7.11 99.48 0.71 -13.29 15 10 H -0.27 -13.29 6.22 99.48 0.62 -12.67 15 11 H -0.31 -14.66 7.11 99.48 0.71 -13.96 15 12 N -0.53 -27.10 6.53 -188.48 -1.23 -28.33 15 13 C 0.10 4.40 8.89 179.54 1.60 5.99 15 14 S 0.27 7.11 23.37 -56.49 -1.32 5.79 15 15 C -0.16 -3.49 10.36 67.98 0.70 -2.78 15 16 C -0.04 -1.19 6.18 41.81 0.26 -0.93 15 17 C 0.54 14.61 2.93 71.24 0.21 14.82 15 18 F -0.17 -5.17 15.86 44.97 0.71 -4.46 15 19 F -0.15 -2.96 16.26 44.97 0.73 -2.23 15 20 F -0.17 -4.99 15.69 44.97 0.71 -4.28 15 21 N -0.38 -15.70 3.14 -325.85 -1.02 -16.73 15 22 H 0.06 2.17 8.14 -2.39 -0.02 2.15 15 23 H 0.06 2.10 5.76 -2.39 -0.01 2.08 15 24 H 0.06 2.68 7.38 -2.39 -0.02 2.67 15 25 H 0.28 15.72 8.73 -92.71 -0.81 14.91 15 26 H 0.25 2.61 7.52 -2.91 -0.02 2.59 15 Total: -1.00 -68.00 252.20 6.46 -61.54 By element: Atomic # 1 Polarization: -12.70 SS G_CDS: 1.13 Total: -11.58 kcal Atomic # 6 Polarization: -14.00 SS G_CDS: 4.65 Total: -9.35 kcal Atomic # 7 Polarization: -92.72 SS G_CDS: -1.96 Total: -94.68 kcal Atomic # 9 Polarization: -13.12 SS G_CDS: 2.15 Total: -10.97 kcal Atomic # 14 Polarization: 57.43 SS G_CDS: 1.81 Total: 59.24 kcal Atomic # 16 Polarization: 7.11 SS G_CDS: -1.32 Total: 5.79 kcal Total: -68.00 6.46 -61.54 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075395708.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.943 kcal (2) G-P(sol) polarization free energy of solvation -68.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds