Wall clock time and date at job start Mon Mar 30 2020 07:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47512 * 2 1 4 4 C 1.50702 * 109.46915 * 119.99590 * 2 1 3 5 5 H 1.08001 * 120.00173 * 120.00149 * 4 2 1 6 6 C 1.37884 * 119.99928 * 300.00295 * 4 2 1 7 7 N 1.31517 * 119.99842 * 180.02562 * 6 4 2 8 8 Si 1.86794 * 119.99870 * 359.97438 * 6 4 2 9 9 H 1.48498 * 109.46983 * 90.00328 * 8 6 4 10 10 H 1.48504 * 109.47423 * 210.00232 * 8 6 4 11 11 H 1.48508 * 109.47458 * 330.00361 * 8 6 4 12 12 S 1.81405 * 109.47467 * 239.99179 * 2 1 3 13 13 C 1.76195 * 102.99866 * 171.67369 * 12 2 1 14 14 C 1.38987 * 120.05711 * 173.65200 * 13 12 2 15 15 C 1.38082 * 119.95761 * 180.02562 * 14 13 12 16 16 C 1.38394 * 120.07608 * 0.02562 * 15 14 13 17 17 Cl 1.73601 * 119.93690 * 179.97438 * 16 15 14 18 18 C 1.38487 * 120.12406 * 0.02562 * 16 15 14 19 19 Cl 1.73604 * 119.97800 * 179.97438 * 18 16 15 20 20 C 1.38218 * 120.04422 * 359.68682 * 18 16 15 21 21 H 1.08999 * 109.47097 * 66.29804 * 1 2 3 22 22 H 1.08993 * 109.47672 * 306.29733 * 1 2 3 23 23 H 1.09001 * 109.47177 * 186.29311 * 1 2 3 24 24 H 0.96996 * 119.99524 * 179.97438 * 7 6 4 25 25 H 1.07996 * 120.02337 * 0.02673 * 14 13 12 26 26 H 1.08001 * 119.96027 * 180.02562 * 15 14 13 27 27 H 1.07995 * 120.04233 * 180.31682 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0322 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1316 6 6 1.6990 -0.2392 2.4828 7 7 2.1378 -0.8588 3.5567 8 14 0.6257 1.2800 2.6540 9 1 -0.8022 0.8746 2.6992 10 1 0.9769 1.9957 3.9069 11 1 0.8490 2.1774 1.4920 12 16 2.1347 -0.8553 -1.4810 13 6 3.8684 -0.5437 -1.4385 14 6 4.7090 -1.1587 -2.3587 15 6 6.0674 -0.9134 -2.3232 16 6 6.5928 -0.0563 -1.3720 17 17 8.3012 0.2490 -1.3302 18 6 5.7583 0.5574 -0.4529 19 17 6.4215 1.6313 0.7391 20 6 4.3971 0.3201 -0.4876 21 1 -0.3633 0.4131 -0.9410 22 1 -0.3634 0.6083 0.8282 23 1 -0.3633 -1.0215 0.1126 24 1 1.9037 -0.5271 4.4376 25 1 4.3001 -1.8280 -3.1011 26 1 6.7206 -1.3909 -3.0385 27 1 3.7458 0.8027 0.2260 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083867101.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:22:27 Heat of formation + Delta-G solvation = 5.985229 kcal Electronic energy + Delta-G solvation = -14604.290245 eV Core-core repulsion = 11925.887256 eV Total energy + Delta-G solvation = -2678.402989 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 275.984 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.94792 -36.30671 -36.18086 -34.34733 -31.38570 -30.70236 -30.35813 -25.42238 -22.90191 -22.72823 -21.30401 -17.67225 -16.95390 -16.23077 -15.60577 -15.26413 -14.53792 -14.09362 -13.81379 -13.65891 -13.02712 -12.52040 -12.47227 -11.75713 -11.68898 -11.56920 -11.40720 -11.21682 -10.95541 -10.73533 -10.62718 -10.48354 -9.92063 -9.59654 -9.19986 -9.10095 -8.80089 -8.61194 -6.81957 -6.28984 -4.34601 1.15190 1.38994 2.08365 2.17010 2.53472 3.10290 3.17294 3.24232 3.24627 3.67431 4.18309 4.87414 4.99809 5.25715 5.47944 5.50430 5.91501 5.98044 6.08690 6.11824 6.14084 6.26977 6.45758 6.52183 6.79006 6.89490 7.26011 8.16565 8.73318 9.26068 10.81730 Molecular weight = 275.98amu Principal moments of inertia in cm(-1) A = 0.021312 B = 0.006921 C = 0.005660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.475805 B = 4044.508404 C = 4945.883935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.042 3.958 3 H 0.051 0.949 4 C -0.528 4.528 5 H 0.087 0.913 6 C 0.085 3.915 7 N -0.881 5.881 8 Si 0.877 3.123 9 H -0.274 1.274 10 H -0.291 1.291 11 H -0.265 1.265 12 S -0.126 6.126 13 C -0.044 4.044 14 C -0.100 4.100 15 C -0.089 4.089 16 C -0.050 4.050 17 Cl -0.067 7.067 18 C -0.010 4.010 19 Cl -0.056 7.056 20 C -0.091 4.091 21 H 0.043 0.957 22 H 0.056 0.944 23 H 0.065 0.935 24 H 0.269 0.731 25 H 0.137 0.863 26 H 0.139 0.861 27 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.857 2.790 -10.276 12.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.086 4.086 3 H 0.069 0.931 4 C -0.567 4.567 5 H 0.105 0.895 6 C -0.121 4.121 7 N -0.517 5.517 8 Si 0.707 3.293 9 H -0.201 1.201 10 H -0.218 1.218 11 H -0.190 1.190 12 S 0.123 5.877 13 C -0.158 4.158 14 C -0.125 4.125 15 C -0.110 4.110 16 C -0.081 4.081 17 Cl -0.038 7.038 18 C -0.040 4.040 19 Cl -0.027 7.027 20 C -0.115 4.115 21 H 0.062 0.938 22 H 0.074 0.926 23 H 0.084 0.916 24 H 0.079 0.921 25 H 0.155 0.845 26 H 0.157 0.843 27 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 5.243 2.275 -10.731 12.158 hybrid contribution 0.366 1.526 1.441 2.130 sum 5.609 3.801 -9.290 11.499 Atomic orbital electron populations 1.21979 0.95636 1.02420 0.99755 1.21530 0.95648 0.97668 0.93781 0.93125 1.21011 1.33651 1.14456 0.87545 0.89515 1.24943 0.95176 0.96407 0.95587 1.69855 1.44018 1.39676 0.98106 0.86994 0.81023 0.83729 0.77578 1.20078 1.21829 1.19000 1.84757 0.97046 1.70466 1.35475 1.21784 0.98851 0.97884 0.97275 1.20785 0.91874 1.00447 0.99410 1.20781 0.95119 0.97390 0.97698 1.20613 0.84773 1.02964 0.99767 1.98346 1.12208 1.95085 1.98153 1.20635 0.93058 0.97148 0.93163 1.98369 1.85629 1.62970 1.55701 1.21456 0.92994 0.98269 0.98815 0.93825 0.92605 0.91551 0.92115 0.84521 0.84315 0.82192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 8.59 37.16 0.32 -2.44 15 2 C 0.04 0.91 1.60 -27.88 -0.04 0.87 15 3 H 0.05 1.11 5.98 -51.92 -0.31 0.80 15 4 C -0.53 -13.56 7.59 -34.44 -0.26 -13.82 15 5 H 0.09 2.50 7.96 -52.49 -0.42 2.08 15 6 C 0.08 2.26 5.45 -17.82 -0.10 2.16 15 7 N -0.88 -25.31 13.96 55.43 0.77 -24.54 15 8 Si 0.88 20.18 24.31 -169.99 -4.13 16.04 15 9 H -0.27 -6.13 6.93 56.52 0.39 -5.74 15 10 H -0.29 -6.81 7.11 56.52 0.40 -6.40 15 11 H -0.26 -5.77 6.53 56.52 0.37 -5.40 15 12 S -0.13 -2.40 21.24 -107.50 -2.28 -4.68 15 13 C -0.04 -0.79 6.03 -39.05 -0.24 -1.03 15 14 C -0.10 -1.51 9.79 -39.36 -0.39 -1.90 15 15 C -0.09 -1.24 9.82 -39.58 -0.39 -1.63 15 16 C -0.05 -0.79 6.32 -39.43 -0.25 -1.03 15 17 Cl -0.07 -0.93 27.95 -51.86 -1.45 -2.38 15 18 C -0.01 -0.19 6.32 -39.50 -0.25 -0.44 15 19 Cl -0.06 -0.95 27.95 -51.86 -1.45 -2.40 15 20 C -0.09 -1.75 8.60 -39.34 -0.34 -2.08 15 21 H 0.04 0.74 8.14 -51.93 -0.42 0.32 15 22 H 0.06 1.14 3.47 -51.93 -0.18 0.96 15 23 H 0.07 1.31 8.14 -51.93 -0.42 0.89 15 24 H 0.27 7.27 8.31 -40.82 -0.34 6.93 15 25 H 0.14 1.73 8.06 -52.49 -0.42 1.31 15 26 H 0.14 1.50 8.06 -52.49 -0.42 1.08 15 27 H 0.16 3.41 5.14 -52.49 -0.27 3.14 15 LS Contribution 269.33 15.07 4.06 4.06 Total: -1.00 -26.82 269.33 -8.46 -35.28 By element: Atomic # 1 Polarization: 2.00 SS G_CDS: -2.05 Total: -0.04 kcal Atomic # 6 Polarization: -19.42 SS G_CDS: -1.93 Total: -21.35 kcal Atomic # 7 Polarization: -25.31 SS G_CDS: 0.77 Total: -24.54 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -4.13 Total: 16.04 kcal Atomic # 16 Polarization: -2.40 SS G_CDS: -2.28 Total: -4.68 kcal Atomic # 17 Polarization: -1.88 SS G_CDS: -2.90 Total: -4.78 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -26.82 -8.46 -35.28 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083867101.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.266 kcal (2) G-P(sol) polarization free energy of solvation -26.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds