Wall clock time and date at job start Mon Mar 30 2020 07:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47512 * 2 1 4 4 C 1.50702 * 109.46915 * 119.99590 * 2 1 3 5 5 H 1.08001 * 120.00173 * 120.00149 * 4 2 1 6 6 C 1.37884 * 119.99928 * 300.00295 * 4 2 1 7 7 N 1.31517 * 119.99842 * 180.02562 * 6 4 2 8 8 Si 1.86794 * 119.99870 * 359.97438 * 6 4 2 9 9 H 1.48498 * 109.46983 * 90.00328 * 8 6 4 10 10 H 1.48504 * 109.47423 * 210.00232 * 8 6 4 11 11 H 1.48508 * 109.47458 * 330.00361 * 8 6 4 12 12 S 1.81405 * 109.47467 * 239.99179 * 2 1 3 13 13 C 1.76195 * 102.99866 * 171.67369 * 12 2 1 14 14 C 1.38987 * 120.05711 * 173.65200 * 13 12 2 15 15 C 1.38082 * 119.95761 * 180.02562 * 14 13 12 16 16 C 1.38394 * 120.07608 * 0.02562 * 15 14 13 17 17 Cl 1.73601 * 119.93690 * 179.97438 * 16 15 14 18 18 C 1.38487 * 120.12406 * 0.02562 * 16 15 14 19 19 Cl 1.73604 * 119.97800 * 179.97438 * 18 16 15 20 20 C 1.38218 * 120.04422 * 359.68682 * 18 16 15 21 21 H 1.08999 * 109.47097 * 66.29804 * 1 2 3 22 22 H 1.08993 * 109.47672 * 306.29733 * 1 2 3 23 23 H 1.09001 * 109.47177 * 186.29311 * 1 2 3 24 24 H 0.96996 * 119.99524 * 179.97438 * 7 6 4 25 25 H 1.07996 * 120.02337 * 0.02673 * 14 13 12 26 26 H 1.08001 * 119.96027 * 180.02562 * 15 14 13 27 27 H 1.07995 * 120.04233 * 180.31682 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0322 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1316 6 6 1.6990 -0.2392 2.4828 7 7 2.1378 -0.8588 3.5567 8 14 0.6257 1.2800 2.6540 9 1 -0.8022 0.8746 2.6992 10 1 0.9769 1.9957 3.9069 11 1 0.8490 2.1774 1.4920 12 16 2.1347 -0.8553 -1.4810 13 6 3.8684 -0.5437 -1.4385 14 6 4.7090 -1.1587 -2.3587 15 6 6.0674 -0.9134 -2.3232 16 6 6.5928 -0.0563 -1.3720 17 17 8.3012 0.2490 -1.3302 18 6 5.7583 0.5574 -0.4529 19 17 6.4215 1.6313 0.7391 20 6 4.3971 0.3201 -0.4876 21 1 -0.3633 0.4131 -0.9410 22 1 -0.3634 0.6083 0.8282 23 1 -0.3633 -1.0215 0.1126 24 1 1.9037 -0.5271 4.4376 25 1 4.3001 -1.8280 -3.1011 26 1 6.7206 -1.3909 -3.0385 27 1 3.7458 0.8027 0.2260 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083867101.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:22:27 Heat of formation + Delta-G solvation = -7.773250 kcal Electronic energy + Delta-G solvation = -14604.886857 eV Core-core repulsion = 11925.887256 eV Total energy + Delta-G solvation = -2678.999602 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 275.984 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.23925 -37.53585 -37.49582 -36.18578 -33.28685 -32.02772 -31.65887 -27.26745 -24.37625 -24.04327 -22.93518 -19.05565 -18.86443 -17.66549 -17.07642 -16.81157 -15.96842 -15.71016 -15.15551 -15.05696 -14.74229 -14.21582 -13.97559 -13.25863 -13.07639 -12.91151 -12.84817 -12.77706 -12.52811 -12.31335 -11.97889 -11.90006 -11.57672 -11.47662 -10.89509 -10.81821 -10.41537 -9.93390 -8.38254 -8.24241 -6.43033 -0.15744 0.09032 0.72918 0.81478 1.19871 1.27263 1.33166 1.41572 1.65633 2.25503 2.37398 2.99064 3.64661 4.06858 4.15067 4.22770 4.32565 4.44140 4.57404 4.68536 4.78156 4.88091 4.99001 5.16935 5.27888 5.37628 5.51040 6.09683 6.61515 7.20691 8.79934 Molecular weight = 275.98amu Principal moments of inertia in cm(-1) A = 0.021312 B = 0.006921 C = 0.005660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.475805 B = 4044.508404 C = 4945.883935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.033 3.967 3 H 0.050 0.950 4 C -0.516 4.516 5 H 0.043 0.957 6 C 0.031 3.969 7 N -0.934 5.934 8 Si 0.933 3.067 9 H -0.260 1.260 10 H -0.299 1.299 11 H -0.244 1.244 12 S -0.108 6.108 13 C -0.068 4.068 14 C -0.090 4.090 15 C -0.074 4.074 16 C -0.051 4.051 17 Cl -0.048 7.048 18 C -0.026 4.026 19 Cl -0.060 7.060 20 C -0.113 4.113 21 H 0.076 0.924 22 H 0.051 0.949 23 H 0.061 0.939 24 H 0.268 0.732 25 H 0.167 0.833 26 H 0.181 0.819 27 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.038 3.092 -12.659 14.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.096 4.096 3 H 0.068 0.932 4 C -0.554 4.554 5 H 0.061 0.939 6 C -0.170 4.170 7 N -0.572 5.572 8 Si 0.759 3.241 9 H -0.185 1.185 10 H -0.227 1.227 11 H -0.168 1.168 12 S 0.140 5.860 13 C -0.182 4.182 14 C -0.114 4.114 15 C -0.094 4.094 16 C -0.082 4.082 17 Cl -0.019 7.019 18 C -0.055 4.055 19 Cl -0.031 7.031 20 C -0.138 4.138 21 H 0.095 0.905 22 H 0.069 0.931 23 H 0.080 0.920 24 H 0.077 0.923 25 H 0.185 0.815 26 H 0.198 0.802 27 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 5.431 2.584 -13.144 14.454 hybrid contribution 0.502 1.351 2.085 2.535 sum 5.933 3.935 -11.059 13.152 Atomic orbital electron populations 1.21914 0.93812 1.02444 1.01368 1.21424 0.97187 0.97422 0.93566 0.93194 1.21047 1.32132 1.12824 0.89418 0.93862 1.25711 0.96656 0.99371 0.95223 1.70004 1.46523 1.42004 0.98704 0.86088 0.79860 0.80417 0.77722 1.18506 1.22701 1.16829 1.84469 0.97962 1.70611 1.32933 1.21967 0.98799 0.98955 0.98502 1.21161 0.92018 0.99574 0.98643 1.21243 0.95108 0.95870 0.97197 1.20828 0.85631 1.02455 0.99272 1.98356 1.10509 1.94990 1.98079 1.20736 0.92946 0.97903 0.93949 1.98359 1.85489 1.63165 1.56040 1.21235 0.93547 0.99594 0.99378 0.90520 0.93067 0.91953 0.92272 0.81532 0.80204 0.85048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.19 8.59 71.98 0.62 -4.57 15 2 C 0.03 1.41 1.60 29.85 0.05 1.46 15 3 H 0.05 2.17 5.98 -2.39 -0.01 2.15 15 4 C -0.52 -27.18 7.59 25.60 0.19 -26.99 15 5 H 0.04 2.61 7.96 -2.91 -0.02 2.58 15 6 C 0.03 1.70 5.45 84.66 0.46 2.16 15 7 N -0.93 -55.79 13.96 21.45 0.30 -55.49 15 8 Si 0.93 41.72 24.31 68.60 1.67 43.38 15 9 H -0.26 -10.93 6.93 99.48 0.69 -10.24 15 10 H -0.30 -13.68 7.11 99.48 0.71 -12.97 15 11 H -0.24 -10.01 6.53 99.48 0.65 -9.36 15 12 S -0.11 -3.97 21.24 -56.49 -1.20 -5.17 15 13 C -0.07 -2.42 6.03 22.61 0.14 -2.28 15 14 C -0.09 -2.44 9.79 22.41 0.22 -2.22 15 15 C -0.07 -1.80 9.82 22.27 0.22 -1.58 15 16 C -0.05 -1.49 6.32 22.37 0.14 -1.35 15 17 Cl -0.05 -1.23 27.95 -2.72 -0.08 -1.31 15 18 C -0.03 -0.91 6.32 22.32 0.14 -0.77 15 19 Cl -0.06 -2.04 27.95 -2.72 -0.08 -2.12 15 20 C -0.11 -4.38 8.60 22.43 0.19 -4.19 15 21 H 0.08 2.39 8.14 -2.39 -0.02 2.37 15 22 H 0.05 1.98 3.47 -2.39 -0.01 1.97 15 23 H 0.06 2.38 8.14 -2.39 -0.02 2.36 15 24 H 0.27 15.10 8.31 -92.71 -0.77 14.33 15 25 H 0.17 3.52 8.06 -2.91 -0.02 3.50 15 26 H 0.18 2.92 8.06 -2.91 -0.02 2.90 15 27 H 0.13 5.81 5.14 -2.91 -0.01 5.80 15 Total: -1.00 -59.74 269.33 4.12 -55.63 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: 1.13 Total: 5.38 kcal Atomic # 6 Polarization: -42.69 SS G_CDS: 2.37 Total: -40.32 kcal Atomic # 7 Polarization: -55.79 SS G_CDS: 0.30 Total: -55.49 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 1.67 Total: 43.38 kcal Atomic # 16 Polarization: -3.97 SS G_CDS: -1.20 Total: -5.17 kcal Atomic # 17 Polarization: -3.27 SS G_CDS: -0.15 Total: -3.42 kcal Total: -59.74 4.12 -55.63 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083867101.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.854 kcal (2) G-P(sol) polarization free energy of solvation -59.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds