Wall clock time and date at job start Mon Mar 30 2020 07:30:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.46912 * 2 1 4 4 C 1.50699 * 109.47121 * 120.00684 * 2 1 3 5 5 H 1.08000 * 119.99720 * 119.99570 * 4 2 1 6 6 C 1.37872 * 119.99977 * 299.99797 * 4 2 1 7 7 N 1.31513 * 120.00015 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99964 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47018 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.46882 * 119.99897 * 8 6 4 11 11 H 1.48495 * 109.46940 * 239.99557 * 8 6 4 12 12 S 1.81403 * 109.46632 * 240.00583 * 2 1 3 13 13 O 1.42096 * 110.54483 * 67.49600 * 12 2 1 14 14 O 1.42103 * 110.54433 * 290.74480 * 12 2 1 15 15 C 1.76201 * 104.44678 * 179.12022 * 12 2 1 16 16 C 1.38201 * 120.00151 * 115.16000 * 15 12 2 17 17 C 1.38429 * 120.00025 * 179.97438 * 16 15 12 18 18 F 1.35102 * 119.99881 * 179.97438 * 17 16 15 19 19 C 1.38468 * 120.00120 * 0.02562 * 17 16 15 20 20 C 1.38157 * 119.99961 * 359.97438 * 19 17 16 21 21 C 1.38427 * 119.99882 * 295.09824 * 15 12 2 22 22 F 1.35105 * 120.00492 * 0.04187 * 21 15 12 23 23 H 1.08995 * 109.47158 * 185.91882 * 1 2 3 24 24 H 1.09008 * 109.47130 * 305.91525 * 1 2 3 25 25 H 1.09003 * 109.47367 * 65.91780 * 1 2 3 26 26 H 0.97006 * 120.00257 * 180.02562 * 7 6 4 27 27 H 1.07999 * 120.00306 * 0.25827 * 16 15 12 28 28 H 1.08001 * 120.00266 * 180.02562 * 19 17 16 29 29 H 1.08004 * 119.99909 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5887 1.1311 6 6 1.6993 -0.2396 2.4826 7 7 0.9428 0.8294 2.6034 8 14 2.3226 -1.1200 4.0078 9 1 3.1474 -2.2868 3.6035 10 1 3.1474 -0.1862 4.8159 11 1 1.1679 -1.5870 4.8163 12 16 2.1346 -0.8550 -1.4813 13 8 1.8206 -0.1103 -2.6500 14 8 1.8564 -2.2463 -1.4024 15 6 3.8896 -0.7553 -1.3609 16 6 4.6381 -1.9066 -1.2054 17 6 6.0170 -1.8283 -1.1114 18 9 6.7487 -2.9537 -0.9589 19 6 6.6463 -0.5963 -1.1726 20 6 5.8980 0.5546 -1.3280 21 6 4.5188 0.4762 -1.4234 22 9 3.7872 1.6017 -1.5758 23 1 -0.3633 -1.0221 0.1060 24 1 -0.3634 0.6029 0.8323 25 1 -0.3634 0.4193 -0.9382 26 1 0.7088 1.1609 3.4845 27 1 4.1477 -2.8678 -1.1619 28 1 7.7221 -0.5352 -1.0997 29 1 6.3889 1.5155 -1.3762 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084252499.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:30:36 Heat of formation + Delta-G solvation = -137.344801 kcal Electronic energy + Delta-G solvation = -19788.692447 eV Core-core repulsion = 16247.401451 eV Total energy + Delta-G solvation = -3541.290996 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 276.042 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.93813 -48.87645 -38.61007 -36.26106 -35.16692 -34.36332 -31.51643 -30.73080 -29.91799 -25.62183 -23.84610 -22.73150 -21.97319 -18.83268 -17.80290 -17.34163 -17.28108 -16.57005 -16.01882 -15.70429 -15.37386 -15.25731 -14.69604 -14.39647 -14.23076 -14.05841 -13.26341 -13.06821 -12.63056 -12.39029 -11.99792 -11.78231 -11.71328 -11.31516 -11.22195 -11.19511 -11.08132 -10.71659 -10.50065 -10.34731 -9.60168 -9.50520 -9.12151 -8.70685 -8.55378 -6.35880 -4.50874 0.64445 1.01823 1.04958 3.13537 3.22305 3.22912 3.27202 3.55654 4.08424 4.16857 4.19349 4.45531 4.66800 4.79771 4.96996 5.11401 5.28308 5.42786 5.78905 5.84191 5.95326 6.02991 6.23851 6.33784 6.44375 6.74758 6.99440 7.40241 7.44875 7.77525 8.49994 9.18235 10.70763 Molecular weight = 276.04amu Principal moments of inertia in cm(-1) A = 0.015813 B = 0.009173 C = 0.007461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.277304 B = 3051.613826 C = 3751.890189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.356 4.356 3 H 0.099 0.901 4 C -0.529 4.529 5 H 0.077 0.923 6 C 0.081 3.919 7 N -0.874 5.874 8 Si 0.900 3.100 9 H -0.266 1.266 10 H -0.280 1.280 11 H -0.277 1.277 12 S 2.449 3.551 13 O -0.962 6.962 14 O -0.949 6.949 15 C -0.636 4.636 16 C -0.027 4.027 17 C 0.064 3.936 18 F -0.136 7.136 19 C -0.085 4.085 20 C -0.147 4.147 21 C 0.186 3.814 22 F -0.117 7.117 23 H 0.052 0.948 24 H 0.111 0.889 25 H 0.030 0.970 26 H 0.268 0.732 27 H 0.164 0.836 28 H 0.148 0.852 29 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.486 -0.405 -4.635 9.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.472 4.472 3 H 0.117 0.883 4 C -0.567 4.567 5 H 0.095 0.905 6 C -0.125 4.125 7 N -0.510 5.510 8 Si 0.726 3.274 9 H -0.190 1.190 10 H -0.205 1.205 11 H -0.203 1.203 12 S 2.633 3.367 13 O -0.959 6.959 14 O -0.946 6.946 15 C -0.719 4.719 16 C -0.047 4.047 17 C 0.044 3.956 18 F -0.114 7.114 19 C -0.104 4.104 20 C -0.166 4.166 21 C 0.165 3.835 22 F -0.095 7.095 23 H 0.071 0.929 24 H 0.129 0.871 25 H 0.049 0.951 26 H 0.078 0.922 27 H 0.181 0.819 28 H 0.166 0.834 29 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 8.030 -0.696 -5.245 9.616 hybrid contribution 0.977 0.007 1.417 1.722 sum 9.007 -0.689 -3.827 9.811 Atomic orbital electron populations 1.21722 0.93142 1.02776 1.02207 1.27237 1.02898 1.07926 1.09185 0.88328 1.20494 1.34206 1.13334 0.88697 0.90534 1.24859 0.94016 0.94518 0.99097 1.69867 1.34761 1.22021 1.24325 0.86380 0.79085 0.79893 0.82011 1.19033 1.20543 1.20309 1.07544 0.73355 0.76611 0.79224 1.93492 1.81919 1.73490 1.47047 1.93445 1.82032 1.30904 1.88244 1.30861 1.29256 0.96699 1.15104 1.20816 0.91813 0.99125 0.92912 1.17650 0.89446 0.82696 1.05806 1.91509 1.76959 1.49579 1.93371 1.21121 1.01112 0.90441 0.97757 1.21006 0.91674 0.99977 1.03957 1.17043 0.89590 0.81182 0.95659 1.91612 1.77033 1.48866 1.91948 0.92850 0.87100 0.95082 0.92204 0.81900 0.83435 0.83139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.12 8.89 37.16 0.33 -2.79 15 2 C -0.36 -8.28 2.82 -27.88 -0.08 -8.36 15 3 H 0.10 2.31 7.56 -51.93 -0.39 1.92 15 4 C -0.53 -13.24 8.17 -34.44 -0.28 -13.52 15 5 H 0.08 1.87 7.71 -52.49 -0.40 1.47 15 6 C 0.08 2.06 5.30 -17.82 -0.09 1.97 15 7 N -0.87 -22.74 11.39 55.43 0.63 -22.11 15 8 Si 0.90 19.78 29.54 -169.99 -5.02 14.76 15 9 H -0.27 -5.80 7.11 56.52 0.40 -5.40 15 10 H -0.28 -6.07 7.11 56.52 0.40 -5.67 15 11 H -0.28 -6.05 7.11 56.52 0.40 -5.65 15 12 S 2.45 53.14 4.23 -107.50 -0.45 52.69 15 13 O -0.96 -22.08 17.36 -57.54 -1.00 -23.08 15 14 O -0.95 -21.87 16.63 -57.54 -0.96 -22.83 15 15 C -0.64 -12.21 5.26 -39.53 -0.21 -12.42 15 16 C -0.03 -0.48 9.48 -39.52 -0.37 -0.85 15 17 C 0.06 0.97 7.30 -39.43 -0.29 0.68 15 18 F -0.14 -1.98 17.27 2.25 0.04 -1.94 15 19 C -0.09 -1.09 10.02 -39.53 -0.40 -1.48 15 20 C -0.15 -2.00 10.02 -39.52 -0.40 -2.40 15 21 C 0.19 3.27 7.19 -39.42 -0.28 2.98 15 22 F -0.12 -2.15 15.71 2.25 0.04 -2.12 15 23 H 0.05 1.16 8.14 -51.93 -0.42 0.73 15 24 H 0.11 2.64 6.25 -51.92 -0.32 2.32 15 25 H 0.03 0.61 8.14 -51.93 -0.42 0.19 15 26 H 0.27 6.58 8.31 -40.82 -0.34 6.24 15 27 H 0.16 2.74 7.21 -52.49 -0.38 2.36 15 28 H 0.15 1.32 8.06 -52.49 -0.42 0.90 15 29 H 0.15 1.53 8.06 -52.48 -0.42 1.11 15 LS Contribution 277.32 15.07 4.18 4.18 Total: -1.00 -29.17 277.32 -6.94 -36.11 By element: Atomic # 1 Polarization: 2.84 SS G_CDS: -2.33 Total: 0.52 kcal Atomic # 6 Polarization: -34.12 SS G_CDS: -2.07 Total: -36.19 kcal Atomic # 7 Polarization: -22.74 SS G_CDS: 0.63 Total: -22.11 kcal Atomic # 8 Polarization: -43.95 SS G_CDS: -1.96 Total: -45.90 kcal Atomic # 9 Polarization: -4.13 SS G_CDS: 0.07 Total: -4.05 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.02 Total: 14.76 kcal Atomic # 16 Polarization: 53.14 SS G_CDS: -0.45 Total: 52.69 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -29.17 -6.94 -36.11 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084252499.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.235 kcal (2) G-P(sol) polarization free energy of solvation -29.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds