Wall clock time and date at job start Mon Mar 30 2020 07:30:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.46912 * 2 1 4 4 C 1.50699 * 109.47121 * 120.00684 * 2 1 3 5 5 H 1.08000 * 119.99720 * 119.99570 * 4 2 1 6 6 C 1.37872 * 119.99977 * 299.99797 * 4 2 1 7 7 N 1.31513 * 120.00015 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99964 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47018 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.46882 * 119.99897 * 8 6 4 11 11 H 1.48495 * 109.46940 * 239.99557 * 8 6 4 12 12 S 1.81403 * 109.46632 * 240.00583 * 2 1 3 13 13 O 1.42096 * 110.54483 * 67.49600 * 12 2 1 14 14 O 1.42103 * 110.54433 * 290.74480 * 12 2 1 15 15 C 1.76201 * 104.44678 * 179.12022 * 12 2 1 16 16 C 1.38201 * 120.00151 * 115.16000 * 15 12 2 17 17 C 1.38429 * 120.00025 * 179.97438 * 16 15 12 18 18 F 1.35102 * 119.99881 * 179.97438 * 17 16 15 19 19 C 1.38468 * 120.00120 * 0.02562 * 17 16 15 20 20 C 1.38157 * 119.99961 * 359.97438 * 19 17 16 21 21 C 1.38427 * 119.99882 * 295.09824 * 15 12 2 22 22 F 1.35105 * 120.00492 * 0.04187 * 21 15 12 23 23 H 1.08995 * 109.47158 * 185.91882 * 1 2 3 24 24 H 1.09008 * 109.47130 * 305.91525 * 1 2 3 25 25 H 1.09003 * 109.47367 * 65.91780 * 1 2 3 26 26 H 0.97006 * 120.00257 * 180.02562 * 7 6 4 27 27 H 1.07999 * 120.00306 * 0.25827 * 16 15 12 28 28 H 1.08001 * 120.00266 * 180.02562 * 19 17 16 29 29 H 1.08004 * 119.99909 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5887 1.1311 6 6 1.6993 -0.2396 2.4826 7 7 0.9428 0.8294 2.6034 8 14 2.3226 -1.1200 4.0078 9 1 3.1474 -2.2868 3.6035 10 1 3.1474 -0.1862 4.8159 11 1 1.1679 -1.5870 4.8163 12 16 2.1346 -0.8550 -1.4813 13 8 1.8206 -0.1103 -2.6500 14 8 1.8564 -2.2463 -1.4024 15 6 3.8896 -0.7553 -1.3609 16 6 4.6381 -1.9066 -1.2054 17 6 6.0170 -1.8283 -1.1114 18 9 6.7487 -2.9537 -0.9589 19 6 6.6463 -0.5963 -1.1726 20 6 5.8980 0.5546 -1.3280 21 6 4.5188 0.4762 -1.4234 22 9 3.7872 1.6017 -1.5758 23 1 -0.3633 -1.0221 0.1060 24 1 -0.3634 0.6029 0.8323 25 1 -0.3634 0.4193 -0.9382 26 1 0.7088 1.1609 3.4845 27 1 4.1477 -2.8678 -1.1619 28 1 7.7221 -0.5352 -1.0997 29 1 6.3889 1.5155 -1.3762 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084252499.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:30:36 Heat of formation + Delta-G solvation = -155.891832 kcal Electronic energy + Delta-G solvation = -19789.496706 eV Core-core repulsion = 16247.401451 eV Total energy + Delta-G solvation = -3542.095256 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 276.042 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -50.29538 -50.03726 -39.83190 -38.04398 -36.95489 -36.23361 -32.74594 -32.61879 -31.15342 -27.50893 -25.16939 -23.97964 -23.74865 -20.32005 -19.39292 -18.78878 -18.63507 -18.21090 -17.64245 -17.04595 -16.86883 -16.52571 -16.44903 -16.02126 -15.56137 -15.31788 -14.88864 -14.36533 -14.20230 -13.89532 -13.58245 -13.29474 -13.21089 -13.07885 -13.03658 -12.96840 -12.86169 -12.51116 -12.28170 -11.80631 -11.40786 -11.05528 -10.70787 -10.54265 -9.81131 -8.27200 -6.47631 -0.79134 -0.48833 -0.18820 1.39968 1.43835 1.54644 1.90577 2.02919 2.34845 2.75245 2.91601 3.00849 3.05792 3.29833 3.61062 3.74544 3.99871 4.25494 4.40909 4.49536 4.57924 4.65257 4.72139 4.76214 4.87103 5.14415 5.51763 5.54133 5.57367 5.89750 6.57933 7.23527 8.79842 Molecular weight = 276.04amu Principal moments of inertia in cm(-1) A = 0.015813 B = 0.009173 C = 0.007461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.277304 B = 3051.613826 C = 3751.890189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.370 4.370 3 H 0.090 0.910 4 C -0.540 4.540 5 H 0.076 0.924 6 C 0.038 3.962 7 N -0.900 5.900 8 Si 0.954 3.046 9 H -0.263 1.263 10 H -0.273 1.273 11 H -0.275 1.275 12 S 2.468 3.532 13 O -0.981 6.981 14 O -0.970 6.970 15 C -0.659 4.659 16 C -0.048 4.048 17 C 0.065 3.935 18 F -0.131 7.131 19 C -0.060 4.060 20 C -0.131 4.131 21 C 0.161 3.839 22 F -0.129 7.129 23 H 0.052 0.948 24 H 0.095 0.905 25 H 0.050 0.950 26 H 0.271 0.729 27 H 0.157 0.843 28 H 0.199 0.801 29 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.230 -0.347 -4.369 12.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.486 4.486 3 H 0.108 0.892 4 C -0.579 4.579 5 H 0.094 0.906 6 C -0.166 4.166 7 N -0.536 5.536 8 Si 0.778 3.222 9 H -0.187 1.187 10 H -0.198 1.198 11 H -0.200 1.200 12 S 2.655 3.345 13 O -0.978 6.978 14 O -0.968 6.968 15 C -0.747 4.747 16 C -0.067 4.067 17 C 0.045 3.955 18 F -0.110 7.110 19 C -0.078 4.078 20 C -0.149 4.149 21 C 0.140 3.860 22 F -0.107 7.107 23 H 0.071 0.929 24 H 0.113 0.887 25 H 0.069 0.931 26 H 0.080 0.920 27 H 0.175 0.825 28 H 0.216 0.784 29 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 10.721 -0.640 -4.980 11.838 hybrid contribution 0.245 -0.016 1.285 1.308 sum 10.965 -0.656 -3.695 11.590 Atomic orbital electron populations 1.21692 0.93091 1.02597 1.02664 1.27288 1.03336 1.07742 1.10203 0.89176 1.20722 1.34201 1.13386 0.89558 0.90640 1.25580 0.94248 0.95169 1.01567 1.69958 1.35602 1.23058 1.24987 0.85556 0.78698 0.79033 0.78958 1.18718 1.19780 1.20045 1.06419 0.74493 0.75571 0.77980 1.93459 1.83331 1.73773 1.47282 1.93409 1.83459 1.31663 1.88231 1.30296 1.27140 0.98455 1.18771 1.20855 0.93340 0.98378 0.94130 1.17748 0.88547 0.83871 1.05336 1.91527 1.76525 1.49640 1.93269 1.21687 1.03423 0.88563 0.94104 1.21511 0.89701 1.02321 1.01411 1.17478 0.91339 0.80241 0.96934 1.91579 1.77674 1.49231 1.92213 0.92899 0.88658 0.93106 0.91997 0.82503 0.78373 0.78906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.51 8.89 71.98 0.64 -5.87 15 2 C -0.37 -17.66 2.82 29.85 0.08 -17.58 15 3 H 0.09 4.39 7.56 -2.39 -0.02 4.37 15 4 C -0.54 -27.41 8.17 25.60 0.21 -27.20 15 5 H 0.08 3.74 7.71 -2.91 -0.02 3.72 15 6 C 0.04 1.93 5.30 84.65 0.45 2.38 15 7 N -0.90 -47.38 11.39 21.45 0.24 -47.13 15 8 Si 0.95 40.19 29.54 68.60 2.03 42.22 15 9 H -0.26 -10.85 7.11 99.48 0.71 -10.15 15 10 H -0.27 -11.10 7.11 99.48 0.71 -10.39 15 11 H -0.28 -11.40 7.11 99.48 0.71 -10.70 15 12 S 2.47 109.41 4.23 -56.49 -0.24 109.17 15 13 O -0.98 -45.92 17.36 -127.65 -2.22 -48.13 15 14 O -0.97 -45.85 16.63 -127.65 -2.12 -47.97 15 15 C -0.66 -25.13 5.26 22.31 0.12 -25.01 15 16 C -0.05 -1.62 9.48 22.31 0.21 -1.41 15 17 C 0.07 1.78 7.30 22.37 0.16 1.94 15 18 F -0.13 -3.42 17.27 44.97 0.78 -2.65 15 19 C -0.06 -1.22 10.02 22.31 0.22 -0.99 15 20 C -0.13 -3.02 10.02 22.31 0.22 -2.80 15 21 C 0.16 5.42 7.19 22.37 0.16 5.58 15 22 F -0.13 -4.71 15.71 44.97 0.71 -4.00 15 23 H 0.05 2.37 8.14 -2.39 -0.02 2.35 15 24 H 0.09 4.68 6.25 -2.38 -0.01 4.67 15 25 H 0.05 2.07 8.14 -2.39 -0.02 2.05 15 26 H 0.27 13.40 8.31 -92.70 -0.77 12.63 15 27 H 0.16 5.36 7.21 -2.91 -0.02 5.34 15 28 H 0.20 2.10 8.06 -2.91 -0.02 2.08 15 29 H 0.19 2.81 8.06 -2.91 -0.02 2.79 15 Total: -1.00 -63.54 277.32 2.85 -60.69 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: 1.19 Total: 8.76 kcal Atomic # 6 Polarization: -73.44 SS G_CDS: 2.48 Total: -70.96 kcal Atomic # 7 Polarization: -47.38 SS G_CDS: 0.24 Total: -47.13 kcal Atomic # 8 Polarization: -91.77 SS G_CDS: -4.34 Total: -96.10 kcal Atomic # 9 Polarization: -8.13 SS G_CDS: 1.48 Total: -6.65 kcal Atomic # 14 Polarization: 40.19 SS G_CDS: 2.03 Total: 42.22 kcal Atomic # 16 Polarization: 109.41 SS G_CDS: -0.24 Total: 109.17 kcal Total: -63.54 2.85 -60.69 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084252499.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.198 kcal (2) G-P(sol) polarization free energy of solvation -63.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds