Wall clock time and date at job start Mon Mar 30 2020 07:13:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30932 * 1 3 3 Si 1.86800 * 120.00215 * 2 1 4 4 H 1.48495 * 109.47142 * 275.40519 * 3 2 1 5 5 H 1.48501 * 109.47192 * 35.40448 * 3 2 1 6 6 H 1.48500 * 109.47031 * 155.40682 * 3 2 1 7 7 C 1.39862 * 119.99908 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99943 * 341.80431 * 7 2 1 9 9 C 1.41019 * 120.00204 * 161.80020 * 7 2 1 10 10 C 1.40843 * 120.21037 * 330.04364 * 9 7 2 11 11 C 1.36375 * 120.00418 * 179.72159 * 10 9 7 12 12 Br 1.89106 * 119.77193 * 179.97438 * 11 10 9 13 13 C 1.39529 * 120.45808 * 0.02562 * 11 10 9 14 14 O 1.35753 * 119.78595 * 179.97438 * 13 11 10 15 15 C 1.39082 * 120.43315 * 359.97438 * 13 11 10 16 16 F 1.35100 * 120.01338 * 179.97438 * 15 13 11 17 17 C 1.38307 * 119.97524 * 0.02562 * 15 13 11 18 18 O 1.35735 * 120.22489 * 180.02562 * 17 15 13 19 19 H 0.97008 * 119.99542 * 0.02562 * 1 2 3 20 20 H 1.07997 * 120.00103 * 359.69923 * 10 9 7 21 21 H 0.96698 * 114.00441 * 89.99720 * 14 13 11 22 22 H 0.96701 * 114.00159 * 269.97588 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3093 0.0000 0.0000 3 14 2.2434 1.6177 0.0000 4 1 2.3767 2.1123 -1.3938 5 1 1.5026 2.6170 0.8111 6 1 3.5934 1.4098 0.5827 7 6 2.0086 -1.2112 0.0005 8 1 1.5091 -2.1230 0.2930 9 6 3.3659 -1.2420 -0.3809 10 6 3.8608 -0.3114 -1.3150 11 6 5.1754 -0.3414 -1.6766 12 35 5.8328 0.9108 -2.9320 13 6 6.0385 -1.2902 -1.1275 14 8 7.3445 -1.3081 -1.4976 15 6 5.5696 -2.2180 -0.2035 16 9 6.4127 -3.1333 0.3225 17 6 4.2397 -2.2038 0.1760 18 8 3.7768 -3.1065 1.0778 19 1 -0.4850 0.8402 -0.0004 20 1 3.1992 0.4258 -1.7453 21 1 7.9169 -0.7562 -0.9472 22 1 3.4488 -3.9255 0.6817 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000217523883.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:13:57 Heat of formation + Delta-G solvation = -134.615426 kcal Electronic energy + Delta-G solvation = -14027.667562 eV Core-core repulsion = 11121.817644 eV Total energy + Delta-G solvation = -2905.849918 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 275.958 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -49.82733 -40.50706 -38.64946 -36.93697 -35.42727 -32.68610 -31.60158 -29.52162 -26.84478 -23.77185 -22.88364 -19.96899 -19.79215 -18.55212 -17.97839 -17.38905 -16.97201 -16.49643 -16.05935 -15.15514 -15.03892 -14.91131 -14.43388 -13.96876 -13.61064 -13.19857 -12.86874 -12.44498 -12.06224 -11.74110 -11.42577 -11.38382 -11.22146 -11.01821 -9.59327 -9.47208 -9.11043 -6.68276 0.07784 0.22754 0.59225 1.22785 1.33021 1.42365 1.99750 2.14146 2.97144 3.05373 3.51897 3.69786 4.18306 4.32738 4.83691 4.92862 4.99881 5.08459 5.35969 5.70091 6.01316 6.22209 6.49030 6.83305 7.00103 7.94014 Molecular weight = 275.96amu Principal moments of inertia in cm(-1) A = 0.017531 B = 0.012193 C = 0.007593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.793449 B = 2295.941812 C = 3686.926482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.056 3.944 3 Si 0.939 3.061 4 H -0.243 1.243 5 H -0.266 1.266 6 H -0.251 1.251 7 C -0.432 4.432 8 H 0.079 0.921 9 C 0.073 3.927 10 C -0.203 4.203 11 C -0.043 4.043 12 Br -0.038 7.038 13 C -0.029 4.029 14 O -0.478 6.478 15 C 0.091 3.909 16 F -0.139 7.139 17 C -0.023 4.023 18 O -0.486 6.486 19 H 0.304 0.696 20 H 0.126 0.874 21 H 0.388 0.612 22 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.964 3.822 -3.788 9.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.164 4.164 3 Si 0.761 3.239 4 H -0.167 1.167 5 H -0.191 1.191 6 H -0.175 1.175 7 C -0.458 4.458 8 H 0.097 0.903 9 C 0.068 3.932 10 C -0.224 4.224 11 C -0.123 4.123 12 Br 0.047 6.953 13 C -0.077 4.077 14 O -0.288 6.288 15 C 0.070 3.930 16 F -0.118 7.118 17 C -0.071 4.071 18 O -0.295 6.295 19 H 0.115 0.885 20 H 0.143 0.857 21 H 0.243 0.757 22 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 7.891 4.381 -4.248 9.975 hybrid contribution -0.088 -0.174 0.537 0.572 sum 7.803 4.206 -3.711 9.610 Atomic orbital electron populations 1.69698 1.08976 1.32531 1.32131 1.26797 0.95389 1.03955 0.90282 0.85837 0.80208 0.77006 0.80849 1.16733 1.19148 1.17493 1.19337 0.93029 0.96562 1.36910 0.90280 1.17841 0.93027 0.91889 0.90480 1.20626 0.94244 1.04576 1.02993 1.21509 0.95403 0.96459 0.98928 1.96530 1.87902 1.55005 1.55821 1.17244 0.85840 1.00724 1.03924 1.84842 1.14420 1.71473 1.58019 1.18188 0.88067 0.91085 0.95692 1.91382 1.70676 1.64559 1.85171 1.18475 0.89321 0.99747 0.99509 1.84752 1.82723 1.29565 1.32488 0.88501 0.85653 0.75692 0.75887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -39.46 13.93 21.82 0.30 -39.15 14 2 C 0.06 2.68 5.40 85.22 0.46 3.14 14 3 Si 0.94 37.93 24.52 68.60 1.68 39.61 14 4 H -0.24 -9.13 6.71 99.48 0.67 -8.46 14 5 H -0.27 -10.02 7.11 99.48 0.71 -9.31 14 6 H -0.25 -10.57 6.86 99.48 0.68 -9.89 14 7 C -0.43 -21.69 9.17 23.35 0.21 -21.47 14 8 H 0.08 4.21 7.90 -2.91 -0.02 4.19 14 9 C 0.07 3.42 5.11 -21.19 -0.11 3.31 14 10 C -0.20 -8.88 6.80 22.47 0.15 -8.72 14 11 C -0.04 -1.72 6.20 22.15 0.14 -1.59 14 12 Br -0.04 -1.25 33.11 -20.37 -0.67 -1.92 14 13 C -0.03 -1.14 6.72 22.78 0.15 -0.99 14 14 O -0.48 -16.50 12.65 -90.79 -1.15 -17.64 14 15 C 0.09 3.87 7.31 22.49 0.16 4.03 14 16 F -0.14 -5.71 16.94 44.97 0.76 -4.95 14 17 C -0.02 -1.04 6.74 23.06 0.16 -0.89 14 18 O -0.49 -20.54 12.71 -90.59 -1.15 -21.69 14 19 H 0.30 13.13 8.30 -92.70 -0.77 12.36 14 20 H 0.13 5.37 4.76 -2.91 -0.01 5.36 14 21 H 0.39 9.96 9.06 -74.06 -0.67 9.28 14 22 H 0.39 12.77 9.06 -74.06 -0.67 12.10 14 Total: -1.00 -54.30 227.07 1.01 -53.29 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: -0.09 Total: 15.63 kcal Atomic # 6 Polarization: -24.50 SS G_CDS: 1.33 Total: -23.17 kcal Atomic # 7 Polarization: -39.46 SS G_CDS: 0.30 Total: -39.15 kcal Atomic # 8 Polarization: -37.04 SS G_CDS: -2.30 Total: -39.34 kcal Atomic # 9 Polarization: -5.71 SS G_CDS: 0.76 Total: -4.95 kcal Atomic # 14 Polarization: 37.93 SS G_CDS: 1.68 Total: 39.61 kcal Atomic # 35 Polarization: -1.25 SS G_CDS: -0.67 Total: -1.92 kcal Total: -54.30 1.01 -53.29 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217523883.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.328 kcal (2) G-P(sol) polarization free energy of solvation -54.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds