Wall clock time and date at job start Mon Mar 30 2020 07:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 S 1.75878 * 125.20062 * 2 1 4 4 C 1.75878 * 90.97992 * 180.02562 * 3 2 1 5 5 C 1.50698 * 125.19722 * 180.26791 * 4 3 2 6 6 H 1.09011 * 109.47175 * 159.69515 * 5 4 3 7 7 O 1.42895 * 109.47628 * 39.69145 * 5 4 3 8 8 C 1.50700 * 109.47063 * 279.68744 * 5 4 3 9 9 H 1.07999 * 119.99717 * 0.02562 * 8 5 4 10 10 C 1.37871 * 120.00359 * 180.02562 * 8 5 4 11 11 N 1.31520 * 120.00087 * 0.02562 * 10 8 5 12 12 Si 1.86800 * 120.00333 * 180.02562 * 10 8 5 13 13 H 1.48495 * 109.47288 * 59.99835 * 12 10 8 14 14 H 1.48498 * 109.47196 * 180.02562 * 12 10 8 15 15 H 1.48509 * 109.46703 * 299.99698 * 12 10 8 16 16 C 1.33404 * 109.60382 * 359.97438 * 4 3 2 17 17 C 1.33431 * 125.20181 * 179.97438 * 2 1 3 18 18 Br 1.89108 * 122.54766 * 359.97438 * 17 2 1 19 19 H 1.09008 * 109.47224 * 269.99936 * 1 2 3 20 20 H 1.08997 * 109.47577 * 30.00380 * 1 2 3 21 21 H 1.08998 * 109.47182 * 150.00334 * 1 2 3 22 22 H 0.96700 * 114.00006 * 300.00202 * 7 5 4 23 23 H 0.96993 * 120.00336 * 179.97438 * 11 10 8 24 24 H 1.08007 * 122.54024 * 179.97438 * 16 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5208 1.4372 0.0000 4 6 3.9751 0.4481 -0.0008 5 6 5.3859 0.9778 0.0046 6 1 6.0642 0.2017 0.3596 7 8 5.4656 2.1122 0.8698 8 6 5.7753 1.3840 -1.3934 9 1 5.0714 1.2703 -2.2046 10 6 7.0301 1.9008 -1.6370 11 7 7.8875 2.0388 -0.6493 12 14 7.5125 2.4049 -3.3698 13 1 6.5890 3.4627 -3.8527 14 1 8.9031 2.9257 -3.3647 15 1 7.4291 1.2263 -4.2695 16 6 3.6385 -0.8428 -0.0004 17 6 2.2762 -1.0903 0.0005 18 35 1.5601 -2.8406 0.0020 19 1 -0.3634 0.0000 1.0277 20 1 -0.3634 0.8899 -0.5139 21 1 -0.3633 -0.8900 -0.5138 22 1 4.8871 2.8436 0.6137 23 1 8.7704 2.4019 -0.8207 24 1 4.3729 -1.6347 -0.0012 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227987075.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:47 Heat of formation + Delta-G solvation = -26.854201 kcal Electronic energy + Delta-G solvation = -11818.900711 eV Core-core repulsion = 9483.936847 eV Total energy + Delta-G solvation = -2334.963864 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 275.956 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -37.83658 -35.73752 -32.29018 -31.87541 -30.44394 -27.92242 -25.23045 -22.97477 -21.43633 -18.43392 -17.06446 -16.67303 -15.20196 -14.70685 -13.99757 -13.95548 -13.23862 -13.10135 -12.74658 -12.15702 -11.96575 -11.53157 -11.22152 -11.11019 -10.95990 -10.46138 -10.45378 -10.13093 -9.98130 -9.49172 -8.78509 -8.57430 -7.95773 -7.85353 -6.14528 -4.35110 1.36279 1.50689 2.25499 2.70841 3.00565 3.23821 3.28827 3.31882 4.30211 5.04579 5.12435 5.33255 5.60003 5.78217 5.85963 6.08528 6.13264 6.37521 6.63201 6.75857 7.42729 7.69334 7.92947 8.65683 9.10629 9.40358 10.88760 Molecular weight = 275.96amu Principal moments of inertia in cm(-1) A = 0.031112 B = 0.005895 C = 0.005542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.755642 B = 4748.506012 C = 5050.873397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.189 4.189 3 S 0.130 5.870 4 C -0.128 4.128 5 C 0.286 3.714 6 H 0.081 0.919 7 O -0.554 6.554 8 C -0.569 4.569 9 H 0.060 0.940 10 C 0.081 3.919 11 N -0.856 5.856 12 Si 0.896 3.104 13 H -0.274 1.274 14 H -0.285 1.285 15 H -0.274 1.274 16 C -0.158 4.158 17 C -0.086 4.086 18 Br -0.052 7.052 19 H 0.073 0.927 20 H 0.068 0.932 21 H 0.076 0.924 22 H 0.345 0.655 23 H 0.265 0.735 24 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.798 -6.064 1.366 15.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.309 4.309 3 S 0.393 5.607 4 C -0.247 4.247 5 C 0.227 3.773 6 H 0.099 0.901 7 O -0.357 6.357 8 C -0.607 4.607 9 H 0.079 0.921 10 C -0.126 4.126 11 N -0.491 5.491 12 Si 0.723 3.277 13 H -0.199 1.199 14 H -0.210 1.210 15 H -0.199 1.199 16 C -0.187 4.187 17 C -0.179 4.179 18 Br 0.031 6.969 19 H 0.092 0.908 20 H 0.087 0.913 21 H 0.095 0.905 22 H 0.190 0.810 23 H 0.075 0.925 24 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -13.698 -5.494 1.750 14.862 hybrid contribution 0.425 -0.640 -1.344 1.548 sum -13.273 -6.134 0.406 14.627 Atomic orbital electron populations 1.20346 0.87750 1.03120 1.02655 1.24296 1.00020 0.95667 1.10896 1.84075 0.96420 1.07884 1.72345 1.26450 1.01373 0.95796 1.01068 1.18214 0.82297 0.85979 0.90821 0.90125 1.86650 1.67519 1.26656 1.54848 1.21475 0.99987 1.45938 0.93265 0.92136 1.25041 0.95971 0.94402 0.97166 1.70052 1.06247 1.41815 1.31019 0.86607 0.77682 0.79151 0.84283 1.19920 1.20995 1.19943 1.19696 0.93564 0.97007 1.08409 1.20549 0.94988 0.90182 1.12200 1.96541 1.85168 1.17240 1.97921 0.90803 0.91265 0.90506 0.81042 0.92541 0.84007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.98 10.02 36.01 0.36 -0.62 14 2 C -0.19 -3.04 6.51 -35.99 -0.23 -3.28 14 3 S 0.13 2.28 22.62 -107.50 -2.43 -0.15 14 4 C -0.13 -2.70 5.42 -36.00 -0.20 -2.90 14 5 C 0.29 7.13 3.27 -29.04 -0.09 7.04 14 6 H 0.08 2.17 8.12 -51.92 -0.42 1.75 14 7 O -0.55 -13.97 12.67 -35.23 -0.45 -14.41 14 8 C -0.57 -15.18 8.75 -34.44 -0.30 -15.49 14 9 H 0.06 1.61 7.74 -52.49 -0.41 1.20 14 10 C 0.08 2.21 5.40 -17.82 -0.10 2.11 14 11 N -0.86 -24.46 12.84 55.43 0.71 -23.75 14 12 Si 0.90 20.72 29.54 -169.99 -5.02 15.70 14 13 H -0.27 -6.24 7.11 56.52 0.40 -5.84 14 14 H -0.28 -6.50 7.11 56.52 0.40 -6.10 14 15 H -0.27 -6.29 7.11 56.52 0.40 -5.89 14 16 C -0.16 -3.10 9.90 -41.19 -0.41 -3.50 14 17 C -0.09 -1.49 6.17 -41.18 -0.25 -1.74 14 18 Br -0.05 -0.75 32.71 -68.01 -2.22 -2.97 14 19 H 0.07 0.80 8.14 -51.92 -0.42 0.38 14 20 H 0.07 0.75 8.14 -51.93 -0.42 0.32 14 21 H 0.08 0.88 7.31 -51.93 -0.38 0.50 14 22 H 0.35 7.77 8.44 45.56 0.38 8.15 14 23 H 0.26 7.16 8.31 -40.82 -0.34 6.82 14 24 H 0.14 2.69 8.06 -52.48 -0.42 2.27 14 LS Contribution 251.39 15.07 3.79 3.79 Total: -1.00 -28.52 251.39 -8.07 -36.60 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: -1.23 Total: 3.57 kcal Atomic # 6 Polarization: -17.15 SS G_CDS: -1.22 Total: -18.38 kcal Atomic # 7 Polarization: -24.46 SS G_CDS: 0.71 Total: -23.75 kcal Atomic # 8 Polarization: -13.97 SS G_CDS: -0.45 Total: -14.41 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Atomic # 16 Polarization: 2.28 SS G_CDS: -2.43 Total: -0.15 kcal Atomic # 35 Polarization: -0.75 SS G_CDS: -2.22 Total: -2.97 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -28.52 -8.07 -36.60 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227987075.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.742 kcal (2) G-P(sol) polarization free energy of solvation -28.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds