Wall clock time and date at job start Mon Mar 30 2020 07:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 S 1.75878 * 125.20062 * 2 1 4 4 C 1.75878 * 90.97992 * 180.02562 * 3 2 1 5 5 C 1.50698 * 125.19722 * 180.26791 * 4 3 2 6 6 H 1.09011 * 109.47175 * 159.69515 * 5 4 3 7 7 O 1.42895 * 109.47628 * 39.69145 * 5 4 3 8 8 C 1.50700 * 109.47063 * 279.68744 * 5 4 3 9 9 H 1.07999 * 119.99717 * 0.02562 * 8 5 4 10 10 C 1.37871 * 120.00359 * 180.02562 * 8 5 4 11 11 N 1.31520 * 120.00087 * 0.02562 * 10 8 5 12 12 Si 1.86800 * 120.00333 * 180.02562 * 10 8 5 13 13 H 1.48495 * 109.47288 * 59.99835 * 12 10 8 14 14 H 1.48498 * 109.47196 * 180.02562 * 12 10 8 15 15 H 1.48509 * 109.46703 * 299.99698 * 12 10 8 16 16 C 1.33404 * 109.60382 * 359.97438 * 4 3 2 17 17 C 1.33431 * 125.20181 * 179.97438 * 2 1 3 18 18 Br 1.89108 * 122.54766 * 359.97438 * 17 2 1 19 19 H 1.09008 * 109.47224 * 269.99936 * 1 2 3 20 20 H 1.08997 * 109.47577 * 30.00380 * 1 2 3 21 21 H 1.08998 * 109.47182 * 150.00334 * 1 2 3 22 22 H 0.96700 * 114.00006 * 300.00202 * 7 5 4 23 23 H 0.96993 * 120.00336 * 179.97438 * 11 10 8 24 24 H 1.08007 * 122.54024 * 179.97438 * 16 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5208 1.4372 0.0000 4 6 3.9751 0.4481 -0.0008 5 6 5.3859 0.9778 0.0046 6 1 6.0642 0.2017 0.3596 7 8 5.4656 2.1122 0.8698 8 6 5.7753 1.3840 -1.3934 9 1 5.0714 1.2703 -2.2046 10 6 7.0301 1.9008 -1.6370 11 7 7.8875 2.0388 -0.6493 12 14 7.5125 2.4049 -3.3698 13 1 6.5890 3.4627 -3.8527 14 1 8.9031 2.9257 -3.3647 15 1 7.4291 1.2263 -4.2695 16 6 3.6385 -0.8428 -0.0004 17 6 2.2762 -1.0903 0.0005 18 35 1.5601 -2.8406 0.0020 19 1 -0.3634 0.0000 1.0277 20 1 -0.3634 0.8899 -0.5139 21 1 -0.3633 -0.8900 -0.5138 22 1 4.8871 2.8436 0.6137 23 1 8.7704 2.4019 -0.8207 24 1 4.3729 -1.6347 -0.0012 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227987075.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:47 Heat of formation + Delta-G solvation = -45.188141 kcal Electronic energy + Delta-G solvation = -11819.695730 eV Core-core repulsion = 9483.936847 eV Total energy + Delta-G solvation = -2335.758883 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 275.956 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.32068 -37.57781 -34.36315 -33.27102 -31.65429 -29.66396 -26.89201 -24.52524 -23.10816 -19.93440 -19.06562 -18.15134 -16.80225 -16.73313 -15.62458 -15.17799 -15.05585 -14.64812 -14.09795 -13.58157 -13.32484 -13.27626 -12.89130 -12.79784 -12.60894 -12.17855 -11.86200 -11.63390 -11.35270 -11.20187 -10.79528 -10.53234 -9.40787 -9.28040 -8.19783 -6.48179 -0.04453 0.19487 0.78086 1.34976 1.39760 1.41615 1.49265 1.54551 2.36721 3.05202 3.81682 4.05484 4.18740 4.37494 4.69138 4.71389 4.86226 5.05488 5.08317 5.31919 5.50120 5.60159 5.91801 6.59761 7.17711 7.34957 8.83254 Molecular weight = 275.96amu Principal moments of inertia in cm(-1) A = 0.031112 B = 0.005895 C = 0.005542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.755642 B = 4748.506012 C = 5050.873397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.165 4.165 3 S 0.154 5.846 4 C -0.176 4.176 5 C 0.291 3.709 6 H 0.045 0.955 7 O -0.569 6.569 8 C -0.578 4.578 9 H 0.058 0.942 10 C 0.031 3.969 11 N -0.895 5.895 12 Si 0.962 3.038 13 H -0.265 1.265 14 H -0.280 1.280 15 H -0.270 1.270 16 C -0.150 4.150 17 C -0.114 4.114 18 Br -0.022 7.022 19 H 0.094 0.906 20 H 0.088 0.912 21 H 0.088 0.912 22 H 0.355 0.645 23 H 0.266 0.734 24 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.977 -6.150 0.516 17.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.285 4.285 3 S 0.417 5.583 4 C -0.294 4.294 5 C 0.231 3.769 6 H 0.062 0.938 7 O -0.373 6.373 8 C -0.616 4.616 9 H 0.076 0.924 10 C -0.173 4.173 11 N -0.531 5.531 12 Si 0.786 3.214 13 H -0.190 1.190 14 H -0.206 1.206 15 H -0.195 1.195 16 C -0.180 4.180 17 C -0.206 4.206 18 Br 0.061 6.939 19 H 0.113 0.887 20 H 0.107 0.893 21 H 0.107 0.893 22 H 0.201 0.799 23 H 0.075 0.925 24 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -15.891 -5.581 0.897 16.866 hybrid contribution 0.976 -0.690 -1.023 1.574 sum -14.914 -6.272 -0.126 16.180 Atomic orbital electron populations 1.20573 0.84509 1.04659 1.04440 1.24885 1.01881 0.94414 1.07293 1.83851 0.94521 1.07878 1.72003 1.25896 1.01153 0.97265 1.05124 1.17794 0.84365 0.85017 0.89680 0.93780 1.86580 1.68267 1.27346 1.55099 1.21754 1.00104 1.45635 0.94124 0.92371 1.25884 0.95931 0.94362 1.01077 1.70178 1.06652 1.43058 1.33233 0.85570 0.77495 0.78948 0.79394 1.18967 1.20567 1.19485 1.19823 0.94961 0.96347 1.06836 1.20579 0.94101 0.92305 1.13612 1.96550 1.84404 1.14990 1.97923 0.88706 0.89345 0.89326 0.79931 0.92513 0.84686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.69 10.02 71.24 0.71 -0.98 14 2 C -0.16 -4.87 6.51 24.60 0.16 -4.71 14 3 S 0.15 5.23 22.62 -56.49 -1.28 3.95 14 4 C -0.18 -7.52 5.42 24.59 0.13 -7.39 14 5 C 0.29 15.01 3.27 29.10 0.10 15.11 14 6 H 0.04 2.54 8.12 -2.38 -0.02 2.52 14 7 O -0.57 -29.57 12.67 -148.98 -1.89 -31.46 14 8 C -0.58 -31.50 8.75 25.60 0.22 -31.27 14 9 H 0.06 3.12 7.74 -2.91 -0.02 3.10 14 10 C 0.03 1.70 5.40 84.65 0.46 2.16 14 11 N -0.89 -52.36 12.84 21.45 0.28 -52.09 14 12 Si 0.96 42.67 29.54 68.60 2.03 44.70 14 13 H -0.26 -11.29 7.11 99.48 0.71 -10.58 14 14 H -0.28 -12.15 7.11 99.48 0.71 -11.45 14 15 H -0.27 -11.69 7.11 99.48 0.71 -10.98 14 16 C -0.15 -5.88 9.90 21.23 0.21 -5.67 14 17 C -0.11 -3.75 6.17 21.23 0.13 -3.62 14 18 Br -0.02 -0.58 32.71 -20.37 -0.67 -1.25 14 19 H 0.09 1.63 8.14 -2.38 -0.02 1.61 14 20 H 0.09 1.51 8.14 -2.39 -0.02 1.49 14 21 H 0.09 1.66 7.31 -2.39 -0.02 1.64 14 22 H 0.36 16.34 8.44 -74.06 -0.63 15.72 14 23 H 0.27 14.68 8.31 -92.71 -0.77 13.91 14 24 H 0.14 5.28 8.06 -2.91 -0.02 5.26 14 Total: -1.00 -61.47 251.39 1.20 -60.28 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: 0.60 Total: 12.24 kcal Atomic # 6 Polarization: -38.49 SS G_CDS: 2.12 Total: -36.36 kcal Atomic # 7 Polarization: -52.36 SS G_CDS: 0.28 Total: -52.09 kcal Atomic # 8 Polarization: -29.57 SS G_CDS: -1.89 Total: -31.46 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Atomic # 16 Polarization: 5.23 SS G_CDS: -1.28 Total: 3.95 kcal Atomic # 35 Polarization: -0.58 SS G_CDS: -0.67 Total: -1.25 kcal Total: -61.47 1.20 -60.28 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227987075.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.088 kcal (2) G-P(sol) polarization free energy of solvation -61.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds