Wall clock time and date at job start Mon Mar 30 2020 07:13:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30916 * 1 3 3 Si 1.86802 * 120.00198 * 2 1 4 4 H 1.48488 * 109.47126 * 269.99733 * 3 2 1 5 5 H 1.48497 * 109.47055 * 30.00139 * 3 2 1 6 6 H 1.48505 * 109.46783 * 149.99661 * 3 2 1 7 7 C 1.39861 * 119.99841 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99891 * 160.66097 * 7 2 1 9 9 C 1.41108 * 120.00195 * 340.93379 * 7 2 1 10 10 C 1.41052 * 120.18403 * 322.64345 * 9 7 2 11 11 F 1.35099 * 120.20233 * 359.96606 * 10 9 7 12 12 C 1.38029 * 119.59747 * 179.69552 * 10 9 7 13 13 O 1.36051 * 120.01426 * 180.28842 * 12 10 9 14 14 C 1.39651 * 119.97428 * 0.57406 * 12 10 9 15 15 O 1.35764 * 119.81337 * 179.69628 * 14 12 10 16 16 C 1.39171 * 120.38028 * 359.71567 * 14 12 10 17 17 C 1.36541 * 120.40471 * 359.97438 * 16 14 12 18 18 Br 1.89099 * 119.99484 * 180.02562 * 17 16 14 19 19 H 0.97001 * 119.99713 * 5.55097 * 1 2 3 20 20 H 0.96698 * 114.00033 * 270.28523 * 13 12 10 21 21 H 0.96700 * 113.99604 * 270.02137 * 15 14 12 22 22 H 1.07995 * 119.79991 * 179.97438 * 16 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3092 0.0000 0.0000 3 14 2.2432 1.6177 0.0000 4 1 2.4908 2.0463 -1.4000 5 1 1.4407 2.6526 0.7001 6 1 3.5408 1.4400 0.7001 7 6 2.0084 -1.2113 0.0005 8 1 3.0428 -1.2378 -0.3092 9 6 1.3610 -2.3996 0.4003 10 6 0.4285 -2.3777 1.4584 11 9 0.1506 -1.2193 2.0956 12 6 -0.2024 -3.5461 1.8353 13 8 -1.1076 -3.5336 2.8509 14 6 0.0931 -4.7421 1.1776 15 8 -0.5249 -5.8905 1.5551 16 6 1.0178 -4.7637 0.1378 17 6 1.6463 -3.6159 -0.2519 18 35 2.9002 -3.6584 -1.6668 19 1 -0.4850 0.8361 -0.0813 20 1 -0.7215 -3.6885 3.7238 21 1 -0.0561 -6.3813 2.2438 22 1 1.2395 -5.6939 -0.3641 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258347324.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:13:52 Heat of formation + Delta-G solvation = -131.987723 kcal Electronic energy + Delta-G solvation = -14125.960380 eV Core-core repulsion = 11220.224409 eV Total energy + Delta-G solvation = -2905.735972 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 275.958 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -49.11691 -40.48353 -37.79324 -37.49388 -35.23735 -32.03835 -31.21008 -29.30630 -26.78941 -23.35538 -22.87330 -19.94662 -19.25472 -18.61933 -17.66576 -16.86596 -16.77716 -16.43744 -15.54606 -15.14913 -14.89783 -14.27936 -14.12228 -13.61771 -13.24762 -13.07606 -12.74833 -12.56625 -12.11427 -11.75347 -11.20760 -11.03025 -10.98009 -10.74654 -9.26422 -9.23015 -8.81801 -6.55392 0.32903 0.57605 1.11454 1.36426 1.42625 1.51992 2.14463 2.43815 3.08374 3.31664 3.48281 4.05918 4.35236 4.81645 4.98706 5.11449 5.29046 5.40517 5.52813 5.83471 6.19396 6.53350 6.66323 6.75334 7.17127 8.17861 Molecular weight = 275.96amu Principal moments of inertia in cm(-1) A = 0.016074 B = 0.012838 C = 0.007382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.548338 B = 2180.461937 C = 3792.343452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.038 3.962 3 Si 0.980 3.020 4 H -0.255 1.255 5 H -0.272 1.272 6 H -0.251 1.251 7 C -0.467 4.467 8 H 0.103 0.897 9 C 0.083 3.917 10 C -0.005 4.005 11 F -0.143 7.143 12 C 0.077 3.923 13 O -0.498 6.498 14 C -0.022 4.022 15 O -0.488 6.488 16 C -0.070 4.070 17 C -0.171 4.171 18 Br -0.056 7.056 19 H 0.293 0.707 20 H 0.398 0.602 21 H 0.388 0.612 22 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.464 -4.877 0.836 7.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.181 4.181 3 Si 0.799 3.201 4 H -0.180 1.180 5 H -0.197 1.197 6 H -0.175 1.175 7 C -0.494 4.494 8 H 0.121 0.879 9 C 0.078 3.922 10 C -0.027 4.027 11 F -0.122 7.122 12 C 0.030 3.970 13 O -0.309 6.309 14 C -0.069 4.069 15 O -0.298 6.298 16 C -0.091 4.091 17 C -0.252 4.252 18 Br 0.029 6.971 19 H 0.104 0.896 20 H 0.255 0.745 21 H 0.244 0.756 22 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 4.875 -4.428 -0.476 6.603 hybrid contribution 0.253 0.724 1.190 1.415 sum 5.129 -3.704 0.714 6.366 Atomic orbital electron populations 1.69828 1.09517 1.31763 1.31474 1.26784 0.95270 1.04817 0.91272 0.85204 0.79301 0.75611 0.79940 1.17958 1.19651 1.17455 1.19789 0.99814 0.91162 1.38663 0.87931 1.17597 0.91255 0.93614 0.89783 1.18196 1.05000 0.81075 0.98448 1.91296 1.92839 1.47862 1.80219 1.18801 0.92723 0.92114 0.93352 1.84818 1.33610 1.94590 1.17877 1.17757 1.02352 0.85010 1.01813 1.84847 1.50747 1.33573 1.60606 1.20693 0.94284 0.97538 0.96545 1.21075 1.06685 0.95957 1.01465 1.96326 1.56507 1.98919 1.45334 0.89584 0.74491 0.75617 0.84003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -42.33 11.12 21.82 0.24 -42.09 14 2 C 0.04 1.85 4.53 85.22 0.39 2.24 14 3 Si 0.98 37.47 29.61 68.60 2.03 39.50 14 4 H -0.26 -9.23 7.11 99.48 0.71 -8.53 14 5 H -0.27 -10.20 7.11 99.48 0.71 -9.49 14 6 H -0.25 -9.27 7.11 99.48 0.71 -8.57 14 7 C -0.47 -23.57 8.09 23.37 0.19 -23.38 14 8 H 0.10 4.92 7.29 -2.91 -0.02 4.90 14 9 C 0.08 4.21 5.39 -21.22 -0.11 4.10 14 10 C -0.01 -0.27 6.68 22.91 0.15 -0.11 14 11 F -0.14 -7.76 14.14 44.97 0.64 -7.12 14 12 C 0.08 3.50 6.72 22.56 0.15 3.66 14 13 O -0.50 -20.33 13.14 -80.14 -1.05 -21.38 14 14 C -0.02 -0.93 6.74 22.84 0.15 -0.77 14 15 O -0.49 -17.07 13.26 -76.91 -1.02 -18.09 14 16 C -0.07 -2.86 9.63 22.10 0.21 -2.64 14 17 C -0.17 -7.70 6.24 22.53 0.14 -7.56 14 18 Br -0.06 -2.13 32.26 -20.37 -0.66 -2.79 14 19 H 0.29 14.16 8.31 -92.71 -0.77 13.39 14 20 H 0.40 11.43 9.06 -74.06 -0.67 10.76 14 21 H 0.39 9.00 9.06 -74.06 -0.67 8.33 14 22 H 0.14 4.96 8.06 -2.91 -0.02 4.94 14 Total: -1.00 -62.13 230.64 1.42 -60.72 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: -0.04 Total: 15.73 kcal Atomic # 6 Polarization: -25.76 SS G_CDS: 1.27 Total: -24.48 kcal Atomic # 7 Polarization: -42.33 SS G_CDS: 0.24 Total: -42.09 kcal Atomic # 8 Polarization: -37.40 SS G_CDS: -2.07 Total: -39.47 kcal Atomic # 9 Polarization: -7.76 SS G_CDS: 0.64 Total: -7.12 kcal Atomic # 14 Polarization: 37.47 SS G_CDS: 2.03 Total: 39.50 kcal Atomic # 35 Polarization: -2.13 SS G_CDS: -0.66 Total: -2.79 kcal Total: -62.13 1.42 -60.72 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258347324.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.270 kcal (2) G-P(sol) polarization free energy of solvation -62.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds