Wall clock time and date at job start Mon Mar 30 2020 07:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00272 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00082 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 C 1.53002 * 109.47153 * 180.02562 * 9 7 2 11 11 H 1.08998 * 109.46715 * 304.99131 * 10 9 7 12 12 N 1.46894 * 109.47229 * 64.99752 * 10 9 7 13 13 C 1.50701 * 109.46676 * 184.99784 * 10 9 7 14 14 S 1.72048 * 127.24653 * 284.68013 * 13 10 9 15 15 N 1.69597 * 95.71476 * 179.91279 * 14 13 10 16 16 C 1.30088 * 107.16427 * 0.35974 * 15 14 13 17 17 C 1.35181 * 127.24737 * 105.00280 * 13 10 9 18 18 Br 1.89102 * 122.62589 * 359.96915 * 17 13 10 19 19 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 20 20 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 21 21 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 22 22 H 1.00902 * 111.00097 * 296.04582 * 12 10 9 23 23 H 1.00897 * 111.00410 * 60.00068 * 12 10 9 24 24 H 1.07997 * 121.57089 * 179.75714 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 6 2.2453 -3.6621 -0.0121 11 1 2.9262 -3.5533 -0.8563 12 7 3.0131 -3.6566 1.2402 13 6 1.4954 -4.9634 -0.1360 14 16 0.5942 -5.7666 1.0897 15 7 0.1208 -7.0757 0.1209 16 6 0.6397 -6.8888 -1.0572 17 6 1.3943 -5.7483 -1.2320 18 35 2.2222 -5.3153 -2.8761 19 1 -0.4850 -0.8400 0.0004 20 1 0.6281 -2.5591 0.8866 21 1 0.6207 -2.5548 -0.8933 22 1 3.5751 -2.8221 1.3162 23 1 2.4039 -3.7562 2.0383 24 1 0.4863 -7.5936 -1.8610 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260083878.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:06 Heat of formation + Delta-G solvation = 5.693945 kcal Electronic energy + Delta-G solvation = -11894.887191 eV Core-core repulsion = 9593.627472 eV Total energy + Delta-G solvation = -2301.259720 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 275.963 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.15967 -37.71974 -34.82757 -33.03910 -30.79317 -29.66323 -26.83714 -25.20246 -22.89629 -20.98176 -19.01761 -18.87301 -17.29988 -16.29087 -15.81219 -15.56116 -15.23391 -15.12845 -14.31220 -14.15201 -13.51565 -13.28356 -12.77044 -12.51984 -12.28680 -12.04318 -11.94657 -11.74276 -11.27873 -10.86395 -10.59963 -10.52062 -9.75718 -9.64791 -8.69907 -6.42945 -0.55875 -0.12192 0.56779 1.04138 1.09607 1.55137 1.61889 1.80261 2.55431 3.13269 3.21949 3.75153 3.87264 4.06145 4.38887 4.47975 4.59986 5.01635 5.18344 5.24398 5.85260 6.05729 6.13860 6.45803 6.51179 7.39319 8.70388 Molecular weight = 275.96amu Principal moments of inertia in cm(-1) A = 0.023056 B = 0.007325 C = 0.006138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.139971 B = 3821.513365 C = 4560.620392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.033 4.033 3 Si 1.115 2.885 4 H -0.290 1.290 5 H -0.264 1.264 6 H -0.271 1.271 7 C -0.609 4.609 8 H 0.063 0.937 9 C -0.003 4.003 10 C 0.173 3.827 11 H 0.095 0.905 12 N -0.825 5.825 13 C -0.123 4.123 14 S 0.305 5.695 15 N -0.478 5.478 16 C 0.123 3.877 17 C -0.198 4.198 18 Br 0.000 7.000 19 H 0.254 0.746 20 H -0.004 1.004 21 H -0.012 1.012 22 H 0.358 0.642 23 H 0.336 0.664 24 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.828 -12.147 -3.225 13.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.231 4.231 3 Si 0.937 3.063 4 H -0.216 1.216 5 H -0.189 1.189 6 H -0.196 1.196 7 C -0.647 4.647 8 H 0.081 0.919 9 C -0.042 4.042 10 C 0.059 3.941 11 H 0.113 0.887 12 N -0.355 5.355 13 C -0.256 4.256 14 S 0.456 5.544 15 N -0.298 5.298 16 C -0.075 4.075 17 C -0.295 4.295 18 Br 0.082 6.918 19 H 0.064 0.936 20 H 0.014 0.986 21 H 0.006 0.994 22 H 0.173 0.827 23 H 0.148 0.852 24 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 4.279 -11.683 -2.220 12.638 hybrid contribution -0.181 -0.490 -1.214 1.322 sum 4.098 -12.173 -3.434 13.295 Atomic orbital electron populations 1.70928 1.08163 1.29857 1.48285 1.27316 0.96440 1.06729 0.92642 0.82946 0.74096 0.71127 0.78162 1.21603 1.18916 1.19577 1.22244 0.94850 0.92157 1.55458 0.91898 1.19840 0.95044 0.94468 0.94862 1.19779 0.93332 0.85732 0.95276 0.88688 1.59229 1.27163 1.46506 1.02577 1.25829 1.00557 1.00777 0.98399 1.83972 1.40917 1.11826 1.17638 1.76839 1.26016 1.19394 1.07523 1.22996 0.92452 0.95806 0.96276 1.22189 1.11155 1.00307 0.95805 1.96672 1.79123 1.94027 1.21960 0.93619 0.98574 0.99374 0.82697 0.85198 0.76191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.96 13.65 21.45 0.29 -55.66 14 2 C -0.03 -1.80 5.46 84.65 0.46 -1.34 14 3 Si 1.12 47.67 29.90 68.60 2.05 49.72 14 4 H -0.29 -12.74 7.11 99.48 0.71 -12.03 14 5 H -0.26 -10.28 7.11 99.48 0.71 -9.58 14 6 H -0.27 -10.79 7.11 99.48 0.71 -10.09 14 7 C -0.61 -31.69 8.55 25.60 0.22 -31.47 14 8 H 0.06 3.10 7.15 -2.91 -0.02 3.08 14 9 C 0.00 -0.13 3.92 29.85 0.12 -0.01 14 10 C 0.17 6.69 3.11 44.17 0.14 6.83 14 11 H 0.10 3.80 7.14 -2.39 -0.02 3.79 14 12 N -0.82 -28.56 9.16 -171.81 -1.57 -30.14 14 13 C -0.12 -4.28 5.47 24.98 0.14 -4.14 14 14 S 0.30 9.53 23.20 -56.49 -1.31 8.22 14 15 N -0.48 -14.31 12.09 -62.53 -0.76 -15.07 14 16 C 0.12 3.33 11.13 84.86 0.94 4.27 14 17 C -0.20 -6.14 6.20 21.48 0.13 -6.01 14 18 Br 0.00 -0.01 32.78 -20.37 -0.67 -0.68 14 19 H 0.25 15.50 7.22 -92.71 -0.67 14.83 14 20 H 0.00 -0.20 8.01 -2.39 -0.02 -0.22 14 21 H -0.01 -0.65 8.00 -2.39 -0.02 -0.66 14 22 H 0.36 12.45 7.90 -89.69 -0.71 11.74 14 23 H 0.34 11.11 8.54 -89.70 -0.77 10.34 14 24 H 0.22 4.19 8.06 -2.91 -0.02 4.17 14 Total: -1.00 -60.17 247.97 0.06 -60.11 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: -0.12 Total: 15.37 kcal Atomic # 6 Polarization: -34.01 SS G_CDS: 2.15 Total: -31.87 kcal Atomic # 7 Polarization: -98.83 SS G_CDS: -2.04 Total: -100.87 kcal Atomic # 14 Polarization: 47.67 SS G_CDS: 2.05 Total: 49.72 kcal Atomic # 16 Polarization: 9.53 SS G_CDS: -1.31 Total: 8.22 kcal Atomic # 35 Polarization: -0.01 SS G_CDS: -0.67 Total: -0.68 kcal Total: -60.17 0.06 -60.11 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260083878.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.800 kcal (2) G-P(sol) polarization free energy of solvation -60.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds