Wall clock time and date at job start Mon Mar 30 2020 06:54:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47403 * 2 1 4 4 C 1.53003 * 109.46881 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.46881 * 179.97438 * 4 3 2 6 6 H 1.09004 * 109.47208 * 305.00289 * 5 4 3 7 7 C 1.53001 * 109.47092 * 65.00050 * 5 4 3 8 8 C 1.52998 * 109.47154 * 62.73215 * 7 5 4 9 9 C 1.52997 * 109.47204 * 184.99759 * 5 4 3 10 10 N 1.46493 * 109.47099 * 177.06307 * 9 5 4 11 11 C 1.39685 * 120.00218 * 182.22152 * 10 9 5 12 12 C 1.39339 * 119.94840 * 359.72225 * 11 10 9 13 13 C 1.38480 * 120.42259 * 179.72202 * 12 11 10 14 14 C 1.37691 * 120.32172 * 0.55970 * 13 12 11 15 15 C 1.40741 * 119.89536 * 359.72291 * 14 13 12 16 16 C 1.41418 * 120.20653 * 180.02562 * 15 14 13 17 17 H 1.07996 * 119.99553 * 205.21446 * 16 15 14 18 18 C 1.39929 * 120.00149 * 25.20950 * 16 15 14 19 19 N 1.30826 * 119.99825 * 14.69733 * 18 16 15 20 20 Si 1.86795 * 120.00037 * 194.69953 * 18 16 15 21 21 H 1.48508 * 109.47136 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47430 * 119.99755 * 20 18 16 23 23 H 1.48501 * 109.47171 * 239.99893 * 20 18 16 24 24 C 1.38271 * 119.95605 * 180.02562 * 11 10 9 25 25 H 1.09004 * 109.46844 * 59.99904 * 1 2 3 26 26 H 1.09001 * 109.47460 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46641 * 300.00048 * 1 2 3 28 28 H 1.09003 * 109.46641 * 239.99952 * 2 1 3 29 29 H 1.09001 * 109.46833 * 120.00622 * 2 1 3 30 30 H 1.08999 * 109.46698 * 59.99864 * 3 2 1 31 31 H 1.08994 * 109.46796 * 300.00261 * 3 2 1 32 32 H 1.08994 * 109.47182 * 60.00197 * 4 3 2 33 33 H 1.08995 * 109.47048 * 299.99722 * 4 3 2 34 34 H 1.09001 * 109.47335 * 182.73976 * 7 5 4 35 35 H 1.09003 * 109.47075 * 302.73374 * 7 5 4 36 36 H 1.08998 * 109.47487 * 306.02387 * 8 7 5 37 37 H 1.09005 * 109.46755 * 66.02565 * 8 7 5 38 38 H 1.09001 * 109.47330 * 186.01857 * 8 7 5 39 39 H 1.08999 * 109.47398 * 297.06692 * 9 5 4 40 40 H 1.09007 * 109.46594 * 57.06716 * 9 5 4 41 41 H 0.97010 * 120.00497 * 2.22128 * 10 9 5 42 42 H 1.07995 * 119.78855 * 0.02562 * 12 11 10 43 43 H 1.08005 * 119.83669 * 180.28247 * 13 12 11 44 44 H 1.08001 * 120.04473 * 179.74475 * 14 13 12 45 45 H 0.96996 * 119.99771 * 180.02562 * 19 18 16 46 46 H 1.08003 * 120.16426 * 359.97438 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4423 -0.0006 5 6 4.0802 2.8848 -0.0013 6 1 3.6452 3.4237 -0.8431 7 6 3.6760 3.5693 1.3060 8 6 4.3417 2.8538 2.4833 9 6 5.6049 2.8865 -0.1276 10 7 6.0874 4.2679 -0.1988 11 6 7.4506 4.5239 -0.3645 12 6 8.3512 3.4647 -0.4562 13 6 9.7039 3.7072 -0.6263 14 6 10.1753 4.9990 -0.6952 15 6 9.2783 6.0792 -0.5983 16 6 9.7552 7.4086 -0.6687 17 1 9.1946 8.2085 -0.2080 18 6 10.9535 7.6877 -1.3353 19 7 11.4834 6.7938 -2.1301 20 14 11.7965 9.3365 -1.0902 21 1 10.9999 10.1648 -0.1495 22 1 13.1550 9.1197 -0.5310 23 1 11.9044 10.0362 -2.3956 24 6 7.9050 5.8281 -0.4310 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8899 32 1 3.9330 0.9287 -0.8908 33 1 3.9337 0.9284 0.8891 34 1 3.9969 4.6108 1.2852 35 1 2.5928 3.5251 1.4195 36 1 4.1065 1.7903 2.4422 37 1 5.4218 2.9895 2.4271 38 1 3.9712 3.2721 3.4192 39 1 6.0420 2.3932 0.7406 40 1 5.8950 2.3532 -1.0329 41 1 5.4603 5.0049 -0.1308 42 1 7.9914 2.4480 -0.3991 43 1 10.3931 2.8789 -0.7008 44 1 11.2317 5.1830 -0.8239 45 1 12.3142 6.9871 -2.5918 46 1 7.2085 6.6501 -0.3555 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313412235.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:08 Heat of formation + Delta-G solvation = -20.181690 kcal Electronic energy + Delta-G solvation = -20784.555974 eV Core-core repulsion = 17865.040156 eV Total energy + Delta-G solvation = -2919.515818 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -38.61909 -37.32537 -35.18303 -33.92382 -32.56464 -30.21580 -29.70155 -28.65382 -26.36568 -25.20329 -24.17337 -23.41469 -21.29993 -20.70038 -20.03017 -18.89400 -17.25910 -16.16009 -15.59408 -15.37901 -15.06905 -14.61029 -14.41429 -14.19357 -13.91380 -13.31763 -12.90568 -12.77053 -12.74790 -12.47362 -12.36218 -12.24002 -11.98266 -11.58906 -11.46660 -11.37974 -11.14462 -11.05619 -11.02480 -10.75757 -10.59780 -10.47295 -10.38295 -10.31357 -10.14895 -9.71001 -9.24756 -9.17369 -8.64278 -7.32164 -6.63934 -6.12394 -4.26984 2.88372 3.12686 3.18375 3.26950 3.42696 4.00676 4.23412 4.67647 4.69265 4.78410 4.81394 4.91906 5.03483 5.04537 5.27014 5.42143 5.44981 5.55023 5.62483 5.65115 5.74079 5.78363 5.79155 5.82972 5.89480 5.97698 6.03311 6.09423 6.15621 6.19410 6.29440 6.37285 6.38811 6.51299 6.60669 7.08710 7.13225 7.17075 7.41790 7.46776 7.85360 7.97670 8.20025 8.32435 8.57542 8.71714 8.85321 9.05580 9.18137 10.31387 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.039715 B = 0.002875 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.858222 B = 9735.797048 C = 9970.600487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.120 4.120 4 C -0.115 4.115 5 C -0.099 4.099 6 H 0.071 0.929 7 C -0.117 4.117 8 C -0.156 4.156 9 C 0.140 3.860 10 N -0.761 5.761 11 C 0.225 3.775 12 C -0.300 4.300 13 C -0.077 4.077 14 C -0.198 4.198 15 C 0.139 3.861 16 C -0.463 4.463 17 H 0.075 0.925 18 C 0.075 3.925 19 N -0.796 5.796 20 Si 0.907 3.093 21 H -0.262 1.262 22 H -0.273 1.273 23 H -0.276 1.276 24 C -0.289 4.289 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.059 0.941 36 H 0.054 0.946 37 H 0.062 0.938 38 H 0.048 0.952 39 H 0.051 0.949 40 H 0.046 0.954 41 H 0.386 0.614 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.117 0.883 45 H 0.277 0.723 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.247 -9.257 4.286 18.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.157 4.157 4 C -0.153 4.153 5 C -0.118 4.118 6 H 0.090 0.910 7 C -0.155 4.155 8 C -0.213 4.213 9 C 0.015 3.985 10 N -0.395 5.395 11 C 0.126 3.874 12 C -0.323 4.323 13 C -0.096 4.096 14 C -0.219 4.219 15 C 0.136 3.864 16 C -0.493 4.493 17 H 0.093 0.907 18 C -0.142 4.142 19 N -0.422 5.422 20 Si 0.731 3.269 21 H -0.185 1.185 22 H -0.198 1.198 23 H -0.201 1.201 24 C -0.313 4.313 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.081 0.919 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.064 0.936 41 H 0.219 0.781 42 H 0.102 0.898 43 H 0.103 0.897 44 H 0.135 0.865 45 H 0.088 0.912 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -15.038 -9.491 4.121 18.254 hybrid contribution 0.212 0.977 -0.058 1.001 sum -14.825 -8.515 4.063 17.573 Atomic orbital electron populations 1.21781 0.96130 1.01379 1.01725 1.21543 0.95621 0.97225 1.01936 1.21654 0.95520 0.96443 1.02094 1.21619 0.95209 0.96085 1.02352 1.21391 0.95653 0.96497 0.98215 0.91029 1.21524 0.99832 0.99714 0.94395 1.21873 1.01725 1.00243 0.97448 1.21124 0.91966 0.85277 1.00162 1.44435 1.05269 1.05227 1.84562 1.17465 0.82101 0.93674 0.94164 1.19869 0.93464 0.95179 1.23772 1.20456 0.93944 0.96135 0.99052 1.21234 0.99961 0.91064 1.09627 1.17357 0.89786 0.93275 0.85936 1.19576 1.04898 0.93912 1.30941 0.90725 1.25890 0.96654 0.98578 0.93057 1.69858 1.17495 1.34899 1.19962 0.86297 0.79533 0.82081 0.78949 1.18536 1.19821 1.20125 1.20408 0.95608 0.92573 1.22731 0.92834 0.92980 0.92849 0.92125 0.92142 0.91759 0.92167 0.91909 0.91399 0.91946 0.92189 0.92660 0.91872 0.93329 0.93064 0.93551 0.78057 0.89785 0.89738 0.86512 0.91205 0.89430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.91 37.16 0.37 -0.69 16 2 C -0.13 -0.97 5.93 -26.73 -0.16 -1.12 16 3 C -0.12 -1.01 4.97 -26.73 -0.13 -1.14 16 4 C -0.11 -1.11 4.52 -26.73 -0.12 -1.23 16 5 C -0.10 -1.13 2.24 -90.62 -0.20 -1.33 16 6 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 7 C -0.12 -1.28 5.35 -26.73 -0.14 -1.42 16 8 C -0.16 -1.72 9.15 37.16 0.34 -1.38 16 9 C 0.14 2.09 3.99 -4.05 -0.02 2.07 16 10 N -0.76 -13.79 5.49 -58.69 -0.32 -14.12 16 11 C 0.22 5.16 6.64 -83.86 -0.56 4.60 16 12 C -0.30 -7.00 9.32 -39.08 -0.36 -7.36 16 13 C -0.08 -1.90 10.02 -39.69 -0.40 -2.29 16 14 C -0.20 -5.40 8.69 -38.84 -0.34 -5.73 16 15 C 0.14 3.87 5.58 -106.85 -0.60 3.27 16 16 C -0.46 -12.73 9.06 -37.74 -0.34 -13.07 16 17 H 0.07 1.98 7.89 -52.49 -0.41 1.57 16 18 C 0.07 1.95 5.20 -17.35 -0.09 1.86 16 19 N -0.80 -21.29 10.82 55.55 0.60 -20.69 16 20 Si 0.91 19.22 29.58 -169.99 -5.03 14.20 16 21 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 22 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 23 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 24 C -0.29 -7.36 9.63 -38.68 -0.37 -7.73 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.54 6.51 -51.93 -0.34 0.20 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.65 6.15 -51.93 -0.32 0.33 16 34 H 0.06 0.74 7.07 -51.93 -0.37 0.38 16 35 H 0.06 0.57 6.44 -51.93 -0.33 0.24 16 36 H 0.05 0.55 6.12 -51.93 -0.32 0.23 16 37 H 0.06 0.83 6.67 -51.93 -0.35 0.48 16 38 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.05 0.79 6.24 -51.93 -0.32 0.46 16 40 H 0.05 0.74 7.84 -51.93 -0.41 0.33 16 41 H 0.39 6.46 7.47 -40.82 -0.30 6.15 16 42 H 0.08 1.78 6.70 -52.49 -0.35 1.43 16 43 H 0.08 1.87 8.06 -52.48 -0.42 1.45 16 44 H 0.12 3.27 6.09 -52.49 -0.32 2.95 16 45 H 0.28 6.72 8.30 -40.82 -0.34 6.38 16 46 H 0.09 2.12 8.06 -52.48 -0.42 1.70 16 LS Contribution 356.28 15.07 5.37 5.37 Total: -1.00 -28.28 356.28 -10.43 -38.72 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: -7.93 Total: 9.23 kcal Atomic # 6 Polarization: -29.58 SS G_CDS: -3.12 Total: -32.71 kcal Atomic # 7 Polarization: -35.08 SS G_CDS: 0.28 Total: -34.80 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -5.03 Total: 14.20 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -28.28 -10.43 -38.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313412235.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.533 kcal (2) G-P(sol) polarization free energy of solvation -28.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds