Wall clock time and date at job start Mon Mar 30 2020 06:54:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47403 * 2 1 4 4 C 1.53003 * 109.46881 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.46881 * 179.97438 * 4 3 2 6 6 H 1.09004 * 109.47208 * 305.00289 * 5 4 3 7 7 C 1.53001 * 109.47092 * 65.00050 * 5 4 3 8 8 C 1.52998 * 109.47154 * 62.73215 * 7 5 4 9 9 C 1.52997 * 109.47204 * 184.99759 * 5 4 3 10 10 N 1.46493 * 109.47099 * 177.06307 * 9 5 4 11 11 C 1.39685 * 120.00218 * 182.22152 * 10 9 5 12 12 C 1.39339 * 119.94840 * 359.72225 * 11 10 9 13 13 C 1.38480 * 120.42259 * 179.72202 * 12 11 10 14 14 C 1.37691 * 120.32172 * 0.55970 * 13 12 11 15 15 C 1.40741 * 119.89536 * 359.72291 * 14 13 12 16 16 C 1.41418 * 120.20653 * 180.02562 * 15 14 13 17 17 H 1.07996 * 119.99553 * 205.21446 * 16 15 14 18 18 C 1.39929 * 120.00149 * 25.20950 * 16 15 14 19 19 N 1.30826 * 119.99825 * 14.69733 * 18 16 15 20 20 Si 1.86795 * 120.00037 * 194.69953 * 18 16 15 21 21 H 1.48508 * 109.47136 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47430 * 119.99755 * 20 18 16 23 23 H 1.48501 * 109.47171 * 239.99893 * 20 18 16 24 24 C 1.38271 * 119.95605 * 180.02562 * 11 10 9 25 25 H 1.09004 * 109.46844 * 59.99904 * 1 2 3 26 26 H 1.09001 * 109.47460 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46641 * 300.00048 * 1 2 3 28 28 H 1.09003 * 109.46641 * 239.99952 * 2 1 3 29 29 H 1.09001 * 109.46833 * 120.00622 * 2 1 3 30 30 H 1.08999 * 109.46698 * 59.99864 * 3 2 1 31 31 H 1.08994 * 109.46796 * 300.00261 * 3 2 1 32 32 H 1.08994 * 109.47182 * 60.00197 * 4 3 2 33 33 H 1.08995 * 109.47048 * 299.99722 * 4 3 2 34 34 H 1.09001 * 109.47335 * 182.73976 * 7 5 4 35 35 H 1.09003 * 109.47075 * 302.73374 * 7 5 4 36 36 H 1.08998 * 109.47487 * 306.02387 * 8 7 5 37 37 H 1.09005 * 109.46755 * 66.02565 * 8 7 5 38 38 H 1.09001 * 109.47330 * 186.01857 * 8 7 5 39 39 H 1.08999 * 109.47398 * 297.06692 * 9 5 4 40 40 H 1.09007 * 109.46594 * 57.06716 * 9 5 4 41 41 H 0.97010 * 120.00497 * 2.22128 * 10 9 5 42 42 H 1.07995 * 119.78855 * 0.02562 * 12 11 10 43 43 H 1.08005 * 119.83669 * 180.28247 * 13 12 11 44 44 H 1.08001 * 120.04473 * 179.74475 * 14 13 12 45 45 H 0.96996 * 119.99771 * 180.02562 * 19 18 16 46 46 H 1.08003 * 120.16426 * 359.97438 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4423 -0.0006 5 6 4.0802 2.8848 -0.0013 6 1 3.6452 3.4237 -0.8431 7 6 3.6760 3.5693 1.3060 8 6 4.3417 2.8538 2.4833 9 6 5.6049 2.8865 -0.1276 10 7 6.0874 4.2679 -0.1988 11 6 7.4506 4.5239 -0.3645 12 6 8.3512 3.4647 -0.4562 13 6 9.7039 3.7072 -0.6263 14 6 10.1753 4.9990 -0.6952 15 6 9.2783 6.0792 -0.5983 16 6 9.7552 7.4086 -0.6687 17 1 9.1946 8.2085 -0.2080 18 6 10.9535 7.6877 -1.3353 19 7 11.4834 6.7938 -2.1301 20 14 11.7965 9.3365 -1.0902 21 1 10.9999 10.1648 -0.1495 22 1 13.1550 9.1197 -0.5310 23 1 11.9044 10.0362 -2.3956 24 6 7.9050 5.8281 -0.4310 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8899 32 1 3.9330 0.9287 -0.8908 33 1 3.9337 0.9284 0.8891 34 1 3.9969 4.6108 1.2852 35 1 2.5928 3.5251 1.4195 36 1 4.1065 1.7903 2.4422 37 1 5.4218 2.9895 2.4271 38 1 3.9712 3.2721 3.4192 39 1 6.0420 2.3932 0.7406 40 1 5.8950 2.3532 -1.0329 41 1 5.4603 5.0049 -0.1308 42 1 7.9914 2.4480 -0.3991 43 1 10.3931 2.8789 -0.7008 44 1 11.2317 5.1830 -0.8239 45 1 12.3142 6.9871 -2.5918 46 1 7.2085 6.6501 -0.3555 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313412235.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:08 Heat of formation + Delta-G solvation = -32.772753 kcal Electronic energy + Delta-G solvation = -20785.101963 eV Core-core repulsion = 17865.040156 eV Total energy + Delta-G solvation = -2920.061807 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.96926 -38.81586 -36.44353 -35.31894 -34.12779 -31.68181 -31.01422 -30.10093 -27.63430 -27.15284 -25.30933 -24.28439 -22.67040 -22.13187 -21.60406 -19.92088 -19.14011 -17.34422 -16.98318 -16.96500 -16.32714 -16.08675 -15.93123 -15.28031 -14.78701 -14.69577 -14.42612 -14.08833 -13.95404 -13.78783 -13.48622 -13.43291 -13.16906 -13.01613 -12.85843 -12.75159 -12.48562 -12.24159 -12.13893 -11.99579 -11.78840 -11.69361 -11.54580 -11.31358 -11.26963 -11.14786 -11.06545 -11.03466 -10.40803 -9.32555 -8.57988 -7.90678 -6.33146 1.04230 1.35247 1.39154 1.54139 1.58964 2.23218 2.81443 2.83823 3.76917 3.85353 3.91523 3.97170 4.19020 4.25215 4.35499 4.49319 4.50952 4.58786 4.66725 4.70250 4.71688 4.76761 4.88909 4.90950 4.97349 5.02595 5.12047 5.13828 5.17432 5.17605 5.24781 5.26582 5.32270 5.32633 5.38733 5.43922 5.49035 5.54336 5.60600 5.65984 5.95896 6.03792 6.20884 6.32949 6.64402 6.90884 7.02951 7.07260 7.26804 8.39588 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.039715 B = 0.002875 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.858222 B = 9735.797048 C = 9970.600487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.115 4.115 4 C -0.110 4.110 5 C -0.089 4.089 6 H 0.072 0.928 7 C -0.115 4.115 8 C -0.153 4.153 9 C 0.137 3.863 10 N -0.750 5.750 11 C 0.234 3.766 12 C -0.303 4.303 13 C -0.077 4.077 14 C -0.232 4.232 15 C 0.110 3.890 16 C -0.500 4.500 17 H 0.071 0.929 18 C 0.032 3.968 19 N -0.827 5.827 20 Si 0.985 3.015 21 H -0.259 1.259 22 H -0.264 1.264 23 H -0.265 1.265 24 C -0.312 4.312 25 H 0.052 0.948 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.071 0.929 34 H 0.049 0.951 35 H 0.079 0.921 36 H 0.068 0.932 37 H 0.038 0.962 38 H 0.055 0.945 39 H 0.051 0.949 40 H 0.041 0.959 41 H 0.394 0.606 42 H 0.109 0.891 43 H 0.107 0.893 44 H 0.099 0.901 45 H 0.286 0.714 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.685 -9.862 4.696 19.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.152 4.152 4 C -0.148 4.148 5 C -0.107 4.107 6 H 0.090 0.910 7 C -0.153 4.153 8 C -0.211 4.211 9 C 0.013 3.987 10 N -0.382 5.382 11 C 0.132 3.868 12 C -0.326 4.326 13 C -0.096 4.096 14 C -0.252 4.252 15 C 0.108 3.892 16 C -0.530 4.530 17 H 0.089 0.911 18 C -0.182 4.182 19 N -0.454 5.454 20 Si 0.805 3.195 21 H -0.183 1.183 22 H -0.188 1.188 23 H -0.190 1.190 24 C -0.337 4.337 25 H 0.071 0.929 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.068 0.932 35 H 0.098 0.902 36 H 0.087 0.913 37 H 0.057 0.943 38 H 0.074 0.926 39 H 0.070 0.930 40 H 0.059 0.941 41 H 0.228 0.772 42 H 0.127 0.873 43 H 0.125 0.875 44 H 0.117 0.883 45 H 0.096 0.904 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -16.525 -10.125 4.535 19.903 hybrid contribution 0.549 1.036 -0.180 1.186 sum -15.976 -9.089 4.355 18.889 Atomic orbital electron populations 1.21778 0.95565 1.01824 1.01844 1.21536 0.96126 0.96638 1.02004 1.21610 0.94343 0.97054 1.02242 1.21582 0.96162 0.94546 1.02497 1.21317 0.92842 0.97983 0.98605 0.90996 1.21520 1.01024 0.98798 0.93920 1.21846 1.00052 1.01230 0.97925 1.21321 0.94512 0.83073 0.99798 1.44515 1.03544 1.07190 1.82993 1.17536 0.84255 0.92744 0.92229 1.20156 0.93016 0.96481 1.22960 1.20743 0.95163 0.95876 0.97786 1.21167 0.99206 0.92250 1.12621 1.17733 0.91008 0.93870 0.86637 1.19824 1.06610 0.94019 1.32570 0.91065 1.26791 0.96655 1.02725 0.92047 1.69920 1.18061 1.37021 1.20360 0.85134 0.78303 0.76869 0.79180 1.18277 1.18816 1.19005 1.20530 0.95089 0.93919 1.24122 0.92864 0.92433 0.92594 0.92278 0.91903 0.91340 0.92277 0.92049 0.91029 0.93196 0.90220 0.91349 0.94305 0.92561 0.93049 0.94082 0.77166 0.87252 0.87477 0.88277 0.90362 0.89230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.91 71.98 0.71 -1.07 16 2 C -0.13 -1.63 5.93 30.59 0.18 -1.45 16 3 C -0.12 -1.64 4.97 30.60 0.15 -1.49 16 4 C -0.11 -1.86 4.52 30.60 0.14 -1.72 16 5 C -0.09 -1.83 2.24 -10.79 -0.02 -1.86 16 6 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 7 C -0.12 -2.26 5.35 30.59 0.16 -2.09 16 8 C -0.15 -3.09 9.15 71.98 0.66 -2.43 16 9 C 0.14 3.86 3.99 86.38 0.34 4.21 16 10 N -0.75 -26.46 5.49 -339.59 -1.86 -28.32 16 11 C 0.23 10.71 6.64 38.16 0.25 10.96 16 12 C -0.30 -13.93 9.32 22.59 0.21 -13.72 16 13 C -0.08 -3.81 10.02 22.20 0.22 -3.58 16 14 C -0.23 -13.03 8.69 22.75 0.20 -12.83 16 15 C 0.11 6.35 5.58 -21.31 -0.12 6.23 16 16 C -0.50 -28.50 9.06 23.46 0.21 -28.28 16 17 H 0.07 3.93 7.89 -2.91 -0.02 3.91 16 18 C 0.03 1.68 5.20 85.25 0.44 2.13 16 19 N -0.83 -45.36 10.82 21.82 0.24 -45.12 16 20 Si 0.98 39.86 29.58 68.60 2.03 41.89 16 21 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 22 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 23 H -0.27 -10.22 7.11 99.48 0.71 -9.51 16 24 C -0.31 -16.28 9.63 22.85 0.22 -16.06 16 25 H 0.05 0.62 8.14 -2.38 -0.02 0.60 16 26 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.07 0.93 6.51 -2.39 -0.02 0.92 16 31 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.07 1.17 6.15 -2.39 -0.01 1.16 16 34 H 0.05 1.11 7.07 -2.39 -0.02 1.09 16 35 H 0.08 1.29 6.44 -2.39 -0.02 1.27 16 36 H 0.07 1.19 6.12 -2.39 -0.01 1.17 16 37 H 0.04 0.97 6.67 -2.38 -0.02 0.95 16 38 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.05 1.49 6.24 -2.39 -0.01 1.47 16 40 H 0.04 1.23 7.84 -2.38 -0.02 1.21 16 41 H 0.39 12.81 7.47 -92.70 -0.69 12.11 16 42 H 0.11 4.42 6.70 -2.91 -0.02 4.40 16 43 H 0.11 4.69 8.06 -2.91 -0.02 4.66 16 44 H 0.10 5.82 6.09 -2.91 -0.02 5.80 16 45 H 0.29 14.08 8.30 -92.71 -0.77 13.31 16 46 H 0.09 4.47 8.06 -2.91 -0.02 4.45 16 Total: -1.00 -62.16 356.28 4.62 -57.54 By element: Atomic # 1 Polarization: 36.82 SS G_CDS: 0.25 Total: 37.07 kcal Atomic # 6 Polarization: -67.02 SS G_CDS: 3.97 Total: -63.05 kcal Atomic # 7 Polarization: -71.81 SS G_CDS: -1.63 Total: -73.44 kcal Atomic # 14 Polarization: 39.86 SS G_CDS: 2.03 Total: 41.89 kcal Total: -62.16 4.62 -57.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313412235.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.764 kcal (2) G-P(sol) polarization free energy of solvation -62.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds