Wall clock time and date at job start Mon Mar 30 2020 07:07:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.53006 * 109.46846 * 65.00509 * 4 2 1 6 6 N 1.46902 * 109.46859 * 180.02562 * 5 4 2 7 7 C 1.46903 * 110.99753 * 179.97438 * 6 5 4 8 8 C 1.52996 * 109.46966 * 179.97438 * 7 6 5 9 9 C 1.53003 * 109.47187 * 179.97438 * 8 7 6 10 10 C 1.52991 * 109.47413 * 180.02562 * 9 8 7 11 11 C 1.50703 * 109.47558 * 180.02562 * 10 9 8 12 12 H 1.08003 * 119.99418 * 0.02562 * 11 10 9 13 13 C 1.37879 * 120.00128 * 180.02562 * 11 10 9 14 14 N 1.31510 * 120.00063 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 119.99551 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47029 * 60.00136 * 15 13 11 17 17 H 1.48500 * 109.46788 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47236 * 299.99837 * 15 13 11 19 19 C 1.50703 * 109.46966 * 119.99910 * 2 1 3 20 20 C 1.38237 * 119.99747 * 59.72563 * 19 2 1 21 21 C 1.38240 * 119.99788 * 179.81066 * 20 19 2 22 22 C 1.38236 * 119.99657 * 0.39831 * 21 20 19 23 23 C 1.38230 * 120.00403 * 359.85459 * 22 21 20 24 24 C 1.38232 * 120.00112 * 240.00114 * 19 2 1 25 25 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 26 26 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 27 27 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47069 * 184.99942 * 4 2 1 29 29 H 1.08991 * 109.47625 * 305.00262 * 4 2 1 30 30 H 1.09002 * 109.46824 * 299.99583 * 5 4 2 31 31 H 1.09001 * 109.47241 * 59.99481 * 5 4 2 32 32 H 1.00892 * 111.00246 * 56.04158 * 6 5 4 33 33 H 1.08995 * 109.47175 * 299.99647 * 7 6 5 34 34 H 1.09006 * 109.47173 * 59.99887 * 7 6 5 35 35 H 1.08995 * 109.47303 * 300.00081 * 8 7 6 36 36 H 1.09006 * 109.46850 * 60.00200 * 8 7 6 37 37 H 1.09004 * 109.46953 * 300.00837 * 9 8 7 38 38 H 1.09006 * 109.46766 * 60.00512 * 9 8 7 39 39 H 1.09005 * 109.47088 * 300.00506 * 10 9 8 40 40 H 1.09006 * 109.47228 * 59.99906 * 10 9 8 41 41 H 0.97003 * 119.99758 * 180.02562 * 14 13 11 42 42 H 1.08003 * 120.00234 * 0.02562 * 20 19 2 43 43 H 1.07995 * 119.99993 * 180.23158 * 21 20 19 44 44 H 1.08005 * 119.99783 * 179.83592 * 22 21 20 45 45 H 1.08000 * 120.00473 * 179.97438 * 23 22 21 46 46 H 1.08005 * 119.99991 * 359.97438 * 24 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6354 0.0689 -2.4953 6 7 2.1245 -0.6240 -3.6947 7 6 1.7531 0.1074 -4.9134 8 6 2.2792 -0.6428 -6.1387 9 6 1.8918 0.1186 -7.4080 10 6 2.4173 -0.6319 -8.6333 11 6 2.0364 0.1183 -9.8836 12 1 1.4758 1.0387 -9.8113 13 6 2.4034 -0.3702 -11.1196 14 7 3.0864 -1.4906 -11.2074 15 14 1.9304 0.5595 -12.6693 16 1 2.5238 1.9202 -12.6307 17 1 2.4406 -0.1689 -13.8585 18 1 0.4515 0.6664 -12.7505 19 6 2.0323 -0.7104 1.2305 20 6 1.6936 -2.0322 1.4521 21 6 2.1576 -2.6850 2.5788 22 6 2.9535 -2.0136 3.4881 23 6 3.2878 -0.6903 3.2691 24 6 2.8270 -0.0386 2.1405 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1264 -0.7995 -1.2055 29 1 1.6055 -1.7198 -1.2951 30 1 0.5490 0.1471 -2.5390 31 1 2.0700 1.0675 -2.4494 32 1 1.7867 -1.5741 -3.7265 33 1 0.6676 0.1859 -4.9735 34 1 2.1886 1.1062 -4.8847 35 1 3.3647 -0.7210 -6.0785 36 1 1.8440 -1.6418 -6.1676 37 1 0.8062 0.1964 -7.4680 38 1 2.3268 1.1177 -7.3794 39 1 3.5029 -0.7101 -8.5735 40 1 1.9822 -1.6309 -8.6618 41 1 3.3449 -1.8341 -12.0770 42 1 1.0694 -2.5559 0.7432 43 1 1.8961 -3.7187 2.7501 44 1 3.3138 -2.5228 4.3697 45 1 3.9092 -0.1656 3.9797 46 1 3.0883 0.9953 1.9693 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385276906.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:24 Heat of formation + Delta-G solvation = -18.373787 kcal Electronic energy + Delta-G solvation = -19710.065969 eV Core-core repulsion = 16790.628548 eV Total energy + Delta-G solvation = -2919.437421 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.84873 -37.34613 -35.65013 -33.92063 -32.17093 -31.19842 -30.34183 -28.89425 -27.20431 -24.76485 -23.71128 -22.97022 -21.87978 -21.39418 -20.10513 -19.84254 -17.18204 -16.25424 -16.07415 -15.72819 -15.41300 -14.72632 -14.56284 -14.47773 -14.31942 -13.70938 -13.55791 -13.54462 -13.24240 -12.74676 -12.46771 -12.34892 -11.97484 -11.84626 -11.59736 -11.49042 -11.37601 -11.16543 -10.94881 -10.86313 -10.74829 -10.48175 -10.45741 -10.39129 -9.59566 -9.23095 -9.20194 -9.00817 -8.93658 -8.34152 -8.29642 -5.95254 -3.97489 1.07899 1.11850 3.35737 3.39828 3.42447 3.49600 4.12506 4.41733 4.47486 4.50350 4.71438 4.78340 4.83801 4.96750 5.05373 5.12883 5.22012 5.23733 5.34054 5.39940 5.43614 5.49540 5.57562 5.62267 5.66006 5.74871 5.77365 5.83296 5.94229 6.00956 6.08870 6.19798 6.20508 6.23515 6.29620 6.38946 6.54871 6.72451 6.86056 6.99764 7.08435 7.26777 7.45435 7.73575 7.89996 8.05927 8.48724 9.09795 9.66068 11.16046 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.049259 B = 0.001940 C = 0.001912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.290435 B =14432.418000 C =14639.683326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.052 4.052 3 H 0.079 0.921 4 C -0.108 4.108 5 C 0.057 3.943 6 N -0.693 5.693 7 C 0.060 3.940 8 C -0.116 4.116 9 C -0.109 4.109 10 C 0.021 3.979 11 C -0.521 4.521 12 H 0.053 0.947 13 C 0.055 3.945 14 N -0.896 5.896 15 Si 0.892 3.108 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.277 1.277 19 C -0.071 4.071 20 C -0.114 4.114 21 C -0.119 4.119 22 C -0.128 4.128 23 C -0.120 4.120 24 C -0.119 4.119 25 H 0.054 0.946 26 H 0.062 0.938 27 H 0.056 0.944 28 H 0.073 0.927 29 H 0.062 0.938 30 H 0.030 0.970 31 H 0.069 0.931 32 H 0.338 0.662 33 H 0.025 0.975 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.053 0.947 37 H 0.044 0.956 38 H 0.047 0.953 39 H 0.016 0.984 40 H 0.014 0.986 41 H 0.260 0.740 42 H 0.121 0.879 43 H 0.120 0.880 44 H 0.119 0.881 45 H 0.120 0.880 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.284 0.618 30.417 30.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.071 4.071 3 H 0.097 0.903 4 C -0.146 4.146 5 C -0.072 4.072 6 N -0.323 5.323 7 C -0.069 4.069 8 C -0.154 4.154 9 C -0.147 4.147 10 C -0.016 4.016 11 C -0.559 4.559 12 H 0.072 0.928 13 C -0.146 4.146 14 N -0.535 5.535 15 Si 0.720 3.280 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.203 1.203 19 C -0.071 4.071 20 C -0.132 4.132 21 C -0.137 4.137 22 C -0.146 4.146 23 C -0.138 4.138 24 C -0.137 4.137 25 H 0.073 0.927 26 H 0.081 0.919 27 H 0.075 0.925 28 H 0.091 0.909 29 H 0.081 0.919 30 H 0.048 0.952 31 H 0.088 0.912 32 H 0.156 0.844 33 H 0.043 0.957 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.072 0.928 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.034 0.966 40 H 0.033 0.967 41 H 0.070 0.930 42 H 0.139 0.861 43 H 0.138 0.862 44 H 0.137 0.863 45 H 0.138 0.862 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.578 0.785 30.314 30.434 hybrid contribution -1.136 0.227 -0.930 1.486 sum -3.714 1.012 29.384 29.635 Atomic orbital electron populations 1.21912 0.94313 1.02170 1.01951 1.20159 0.95962 0.99226 0.91788 0.90281 1.21616 1.01998 0.98761 0.92215 1.22016 0.97229 0.98254 0.89735 1.60499 1.64213 1.05861 1.01776 1.22067 0.97425 0.98125 0.89282 1.21639 1.01406 0.98852 0.93463 1.21592 0.99699 0.98897 0.94536 1.19091 0.96346 0.95345 0.90837 1.21260 1.34949 1.08362 0.91334 0.92830 1.25038 0.95286 0.95085 0.99157 1.69960 1.38692 1.20466 1.24429 0.86665 0.78787 0.79939 0.82631 1.20273 1.21302 1.20302 1.19895 0.97096 0.94259 0.95864 1.21025 1.00194 0.94387 0.97588 1.21158 0.98038 0.99849 0.94673 1.21139 0.98990 0.94944 0.99536 1.21141 1.00002 0.94996 0.97614 1.21102 0.98151 0.99939 0.94463 0.92669 0.91938 0.92480 0.90869 0.91899 0.95221 0.91230 0.84412 0.95663 0.91354 0.91660 0.92787 0.93709 0.93455 0.96600 0.96738 0.93006 0.86125 0.86189 0.86314 0.86213 0.86144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 8.76 37.16 0.33 -0.74 16 2 C -0.05 -0.41 2.56 -91.77 -0.24 -0.65 16 3 H 0.08 0.60 7.88 -51.93 -0.41 0.19 16 4 C -0.11 -0.97 4.69 -26.73 -0.13 -1.10 16 5 C 0.06 0.59 5.44 -3.82 -0.02 0.57 16 6 N -0.69 -8.82 6.50 -113.77 -0.74 -9.56 16 7 C 0.06 0.87 5.68 -3.82 -0.02 0.84 16 8 C -0.12 -2.03 5.47 -26.73 -0.15 -2.17 16 9 C -0.11 -2.30 5.15 -26.73 -0.14 -2.44 16 10 C 0.02 0.56 4.97 -27.89 -0.14 0.42 16 11 C -0.52 -15.16 9.11 -34.44 -0.31 -15.47 16 12 H 0.05 1.51 7.74 -52.48 -0.41 1.10 16 13 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 14 N -0.90 -27.51 13.29 55.43 0.74 -26.78 16 15 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 16 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 17 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 19 C -0.07 -0.60 4.78 -104.62 -0.50 -1.10 16 20 C -0.11 -0.95 8.76 -39.58 -0.35 -1.29 16 21 C -0.12 -0.93 10.05 -39.58 -0.40 -1.32 16 22 C -0.13 -0.96 10.05 -39.58 -0.40 -1.36 16 23 C -0.12 -0.91 10.05 -39.58 -0.40 -1.31 16 24 C -0.12 -0.97 9.67 -39.58 -0.38 -1.35 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.46 6.57 -51.93 -0.34 0.11 16 27 H 0.06 0.41 7.38 -51.93 -0.38 0.02 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.06 0.55 7.58 -51.93 -0.39 0.16 16 30 H 0.03 0.30 6.57 -51.93 -0.34 -0.05 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.34 4.03 8.73 -39.30 -0.34 3.69 16 33 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 37 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.26 7.53 8.31 -40.82 -0.34 7.20 16 42 H 0.12 0.88 7.16 -52.48 -0.38 0.51 16 43 H 0.12 0.72 8.06 -52.49 -0.42 0.29 16 44 H 0.12 0.66 8.06 -52.48 -0.42 0.23 16 45 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 46 H 0.12 0.82 7.95 -52.48 -0.42 0.40 16 LS Contribution 370.90 15.07 5.59 5.59 Total: -1.00 -31.09 370.90 -11.23 -42.33 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -8.46 Total: -1.64 kcal Atomic # 6 Polarization: -23.62 SS G_CDS: -3.33 Total: -26.95 kcal Atomic # 7 Polarization: -36.33 SS G_CDS: 0.00 Total: -36.34 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.09 -11.23 -42.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385276906.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.952 kcal (2) G-P(sol) polarization free energy of solvation -31.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds