Wall clock time and date at job start Mon Mar 30 2020 07:07:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.53006 * 109.46846 * 65.00509 * 4 2 1 6 6 N 1.46902 * 109.46859 * 180.02562 * 5 4 2 7 7 C 1.46903 * 110.99753 * 179.97438 * 6 5 4 8 8 C 1.52996 * 109.46966 * 179.97438 * 7 6 5 9 9 C 1.53003 * 109.47187 * 179.97438 * 8 7 6 10 10 C 1.52991 * 109.47413 * 180.02562 * 9 8 7 11 11 C 1.50703 * 109.47558 * 180.02562 * 10 9 8 12 12 H 1.08003 * 119.99418 * 0.02562 * 11 10 9 13 13 C 1.37879 * 120.00128 * 180.02562 * 11 10 9 14 14 N 1.31510 * 120.00063 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 119.99551 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47029 * 60.00136 * 15 13 11 17 17 H 1.48500 * 109.46788 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47236 * 299.99837 * 15 13 11 19 19 C 1.50703 * 109.46966 * 119.99910 * 2 1 3 20 20 C 1.38237 * 119.99747 * 59.72563 * 19 2 1 21 21 C 1.38240 * 119.99788 * 179.81066 * 20 19 2 22 22 C 1.38236 * 119.99657 * 0.39831 * 21 20 19 23 23 C 1.38230 * 120.00403 * 359.85459 * 22 21 20 24 24 C 1.38232 * 120.00112 * 240.00114 * 19 2 1 25 25 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 26 26 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 27 27 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47069 * 184.99942 * 4 2 1 29 29 H 1.08991 * 109.47625 * 305.00262 * 4 2 1 30 30 H 1.09002 * 109.46824 * 299.99583 * 5 4 2 31 31 H 1.09001 * 109.47241 * 59.99481 * 5 4 2 32 32 H 1.00892 * 111.00246 * 56.04158 * 6 5 4 33 33 H 1.08995 * 109.47175 * 299.99647 * 7 6 5 34 34 H 1.09006 * 109.47173 * 59.99887 * 7 6 5 35 35 H 1.08995 * 109.47303 * 300.00081 * 8 7 6 36 36 H 1.09006 * 109.46850 * 60.00200 * 8 7 6 37 37 H 1.09004 * 109.46953 * 300.00837 * 9 8 7 38 38 H 1.09006 * 109.46766 * 60.00512 * 9 8 7 39 39 H 1.09005 * 109.47088 * 300.00506 * 10 9 8 40 40 H 1.09006 * 109.47228 * 59.99906 * 10 9 8 41 41 H 0.97003 * 119.99758 * 180.02562 * 14 13 11 42 42 H 1.08003 * 120.00234 * 0.02562 * 20 19 2 43 43 H 1.07995 * 119.99993 * 180.23158 * 21 20 19 44 44 H 1.08005 * 119.99783 * 179.83592 * 22 21 20 45 45 H 1.08000 * 120.00473 * 179.97438 * 23 22 21 46 46 H 1.08005 * 119.99991 * 359.97438 * 24 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6354 0.0689 -2.4953 6 7 2.1245 -0.6240 -3.6947 7 6 1.7531 0.1074 -4.9134 8 6 2.2792 -0.6428 -6.1387 9 6 1.8918 0.1186 -7.4080 10 6 2.4173 -0.6319 -8.6333 11 6 2.0364 0.1183 -9.8836 12 1 1.4758 1.0387 -9.8113 13 6 2.4034 -0.3702 -11.1196 14 7 3.0864 -1.4906 -11.2074 15 14 1.9304 0.5595 -12.6693 16 1 2.5238 1.9202 -12.6307 17 1 2.4406 -0.1689 -13.8585 18 1 0.4515 0.6664 -12.7505 19 6 2.0323 -0.7104 1.2305 20 6 1.6936 -2.0322 1.4521 21 6 2.1576 -2.6850 2.5788 22 6 2.9535 -2.0136 3.4881 23 6 3.2878 -0.6903 3.2691 24 6 2.8270 -0.0386 2.1405 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1264 -0.7995 -1.2055 29 1 1.6055 -1.7198 -1.2951 30 1 0.5490 0.1471 -2.5390 31 1 2.0700 1.0675 -2.4494 32 1 1.7867 -1.5741 -3.7265 33 1 0.6676 0.1859 -4.9735 34 1 2.1886 1.1062 -4.8847 35 1 3.3647 -0.7210 -6.0785 36 1 1.8440 -1.6418 -6.1676 37 1 0.8062 0.1964 -7.4680 38 1 2.3268 1.1177 -7.3794 39 1 3.5029 -0.7101 -8.5735 40 1 1.9822 -1.6309 -8.6618 41 1 3.3449 -1.8341 -12.0770 42 1 1.0694 -2.5559 0.7432 43 1 1.8961 -3.7187 2.7501 44 1 3.3138 -2.5228 4.3697 45 1 3.9092 -0.1656 3.9797 46 1 3.0883 0.9953 1.9693 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385276906.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:24 Heat of formation + Delta-G solvation = -34.177068 kcal Electronic energy + Delta-G solvation = -19710.751251 eV Core-core repulsion = 16790.628548 eV Total energy + Delta-G solvation = -2920.122703 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.43280 -38.30608 -36.78562 -35.51208 -33.94526 -31.76449 -31.35028 -29.99995 -28.44700 -26.18781 -24.78304 -23.59273 -22.89609 -22.64312 -21.66824 -20.64867 -18.42805 -17.75002 -17.15295 -16.55236 -16.34417 -16.19304 -15.85061 -15.46868 -15.19048 -14.61845 -14.43211 -14.26975 -14.24868 -14.05458 -13.75242 -13.55230 -13.22399 -12.98025 -12.82392 -12.63287 -12.48658 -12.29776 -12.23508 -12.09994 -12.08451 -11.78424 -11.52015 -11.43372 -11.33366 -11.29144 -10.95054 -10.54831 -9.78066 -9.55268 -9.33210 -8.19506 -6.31239 0.49657 0.53914 1.39515 1.43177 1.51150 2.41147 2.90243 3.12894 3.20982 3.75334 3.85653 4.08077 4.15239 4.19356 4.23832 4.30255 4.31303 4.39747 4.50580 4.54936 4.59577 4.66496 4.67078 4.73409 4.74885 4.84625 4.92508 4.99927 5.03579 5.12611 5.20600 5.21788 5.24614 5.27789 5.34393 5.36756 5.41578 5.55121 5.63216 5.66920 5.78005 5.79383 5.86889 6.11300 6.17532 6.25929 6.48357 6.86082 7.37928 8.92146 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.049259 B = 0.001940 C = 0.001912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.290435 B =14432.418000 C =14639.683326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.046 4.046 3 H 0.081 0.919 4 C -0.098 4.098 5 C 0.060 3.940 6 N -0.702 5.702 7 C 0.071 3.929 8 C -0.106 4.106 9 C -0.097 4.097 10 C 0.022 3.978 11 C -0.546 4.546 12 H 0.060 0.940 13 C -0.004 4.004 14 N -0.934 5.934 15 Si 0.967 3.033 16 H -0.267 1.267 17 H -0.282 1.282 18 H -0.266 1.266 19 C -0.083 4.083 20 C -0.127 4.127 21 C -0.130 4.130 22 C -0.137 4.137 23 C -0.128 4.128 24 C -0.133 4.133 25 H 0.056 0.944 26 H 0.063 0.937 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.039 0.961 31 H 0.068 0.932 32 H 0.343 0.657 33 H 0.033 0.967 34 H 0.069 0.931 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.051 0.949 38 H 0.050 0.950 39 H -0.012 1.012 40 H -0.010 1.010 41 H 0.264 0.736 42 H 0.126 0.874 43 H 0.135 0.865 44 H 0.137 0.863 45 H 0.137 0.863 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.133 1.569 31.169 31.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.065 4.065 3 H 0.100 0.900 4 C -0.136 4.136 5 C -0.069 4.069 6 N -0.333 5.333 7 C -0.058 4.058 8 C -0.144 4.144 9 C -0.135 4.135 10 C -0.015 4.015 11 C -0.584 4.584 12 H 0.079 0.921 13 C -0.201 4.201 14 N -0.574 5.574 15 Si 0.792 3.208 16 H -0.191 1.191 17 H -0.208 1.208 18 H -0.191 1.191 19 C -0.083 4.083 20 C -0.145 4.145 21 C -0.147 4.147 22 C -0.154 4.154 23 C -0.146 4.146 24 C -0.150 4.150 25 H 0.075 0.925 26 H 0.082 0.918 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.057 0.943 31 H 0.087 0.913 32 H 0.161 0.839 33 H 0.052 0.948 34 H 0.087 0.913 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.007 0.993 40 H 0.008 0.992 41 H 0.072 0.928 42 H 0.144 0.856 43 H 0.153 0.847 44 H 0.155 0.845 45 H 0.155 0.845 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -3.434 1.742 31.089 31.327 hybrid contribution -0.836 -0.118 -1.115 1.398 sum -4.269 1.624 29.975 30.321 Atomic orbital electron populations 1.21884 0.93764 1.02295 1.02097 1.20095 0.96326 0.99096 0.91022 0.90022 1.21505 1.01069 0.98888 0.92169 1.22040 0.97707 0.98095 0.89062 1.60448 1.64746 1.06240 1.01853 1.21834 0.97648 0.97658 0.88621 1.21469 1.00752 0.98785 0.93387 1.21403 0.99756 0.98619 0.93762 1.19029 0.94564 0.94750 0.93161 1.21725 1.35238 1.08898 0.92574 0.92141 1.26043 0.95005 0.96008 1.03089 1.70101 1.39683 1.22137 1.25514 0.85469 0.78957 0.78650 0.77774 1.19142 1.20770 1.19073 1.20011 0.97532 0.94543 0.96206 1.21197 1.00606 0.94571 0.98105 1.21434 0.98005 1.00719 0.94590 1.21444 0.98755 0.95116 1.00126 1.21431 1.00061 0.95306 0.97807 1.21336 0.98311 1.00619 0.94783 0.92459 0.91804 0.92379 0.92257 0.91640 0.94281 0.91341 0.83884 0.94842 0.91252 0.92794 0.92835 0.93042 0.93099 0.99324 0.99191 0.92771 0.85611 0.84718 0.84516 0.84520 0.85212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 8.76 71.98 0.63 -1.26 16 2 C -0.05 -0.68 2.56 -11.54 -0.03 -0.71 16 3 H 0.08 1.15 7.88 -2.39 -0.02 1.13 16 4 C -0.10 -1.66 4.69 30.60 0.14 -1.52 16 5 C 0.06 1.14 5.44 86.30 0.47 1.61 16 6 N -0.70 -16.95 6.50 -513.86 -3.34 -20.29 16 7 C 0.07 1.97 5.68 86.30 0.49 2.46 16 8 C -0.11 -3.68 5.47 30.59 0.17 -3.51 16 9 C -0.10 -4.09 5.15 30.59 0.16 -3.94 16 10 C 0.02 1.21 4.97 29.85 0.15 1.36 16 11 C -0.55 -32.04 9.11 25.60 0.23 -31.80 16 12 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 13 C 0.00 -0.23 5.46 84.66 0.46 0.23 16 14 N -0.93 -58.24 13.29 21.45 0.28 -57.96 16 15 Si 0.97 45.00 29.54 68.60 2.03 47.03 16 16 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 17 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 18 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 19 C -0.08 -1.34 4.78 -19.87 -0.09 -1.43 16 20 C -0.13 -2.00 8.76 22.27 0.20 -1.81 16 21 C -0.13 -1.88 10.05 22.27 0.22 -1.65 16 22 C -0.14 -1.87 10.05 22.27 0.22 -1.65 16 23 C -0.13 -1.80 10.05 22.27 0.22 -1.58 16 24 C -0.13 -2.05 9.67 22.27 0.22 -1.83 16 25 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.06 0.82 6.57 -2.39 -0.02 0.80 16 27 H 0.06 0.75 7.38 -2.39 -0.02 0.73 16 28 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.06 1.07 7.58 -2.39 -0.02 1.05 16 30 H 0.04 0.69 6.57 -2.39 -0.02 0.68 16 31 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.34 7.75 8.73 -89.70 -0.78 6.97 16 33 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 35 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 37 H 0.05 2.08 8.14 -2.38 -0.02 2.06 16 38 H 0.05 2.09 8.14 -2.38 -0.02 2.07 16 39 H -0.01 -0.69 8.14 -2.38 -0.02 -0.71 16 40 H -0.01 -0.61 8.14 -2.38 -0.02 -0.63 16 41 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 42 H 0.13 1.74 7.16 -2.91 -0.02 1.72 16 43 H 0.13 1.43 8.06 -2.91 -0.02 1.41 16 44 H 0.14 1.28 8.06 -2.91 -0.02 1.26 16 45 H 0.14 1.34 8.06 -2.91 -0.02 1.32 16 46 H 0.13 1.64 7.95 -2.91 -0.02 1.62 16 Total: -1.00 -66.39 370.90 2.96 -63.43 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: 0.13 Total: 14.82 kcal Atomic # 6 Polarization: -50.89 SS G_CDS: 3.86 Total: -47.03 kcal Atomic # 7 Polarization: -75.19 SS G_CDS: -3.06 Total: -78.25 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -66.39 2.96 -63.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385276906.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.251 kcal (2) G-P(sol) polarization free energy of solvation -66.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds