Wall clock time and date at job start Mon Mar 30 2020 07:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46912 * 109.47052 * 2 1 4 4 C 1.46896 * 110.99912 * 288.11529 * 3 2 1 5 5 C 1.52999 * 109.47320 * 160.32153 * 4 3 2 6 6 C 1.53001 * 109.47361 * 184.94408 * 5 4 3 7 7 C 1.53000 * 109.46834 * 180.02562 * 6 5 4 8 8 C 1.50707 * 109.46845 * 179.97438 * 7 6 5 9 9 H 1.07992 * 119.99689 * 359.97438 * 8 7 6 10 10 C 1.37878 * 119.99715 * 180.02562 * 8 7 6 11 11 N 1.31520 * 120.00195 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 119.99684 * 179.97438 * 10 8 7 13 13 H 1.48507 * 109.47037 * 90.00251 * 12 10 8 14 14 H 1.48503 * 109.47195 * 209.99568 * 12 10 8 15 15 H 1.48500 * 109.47110 * 330.00027 * 12 10 8 16 16 C 1.46894 * 110.99801 * 164.16266 * 3 2 1 17 17 C 1.50701 * 109.47409 * 293.95142 * 16 3 2 18 18 C 1.38238 * 119.99989 * 90.00209 * 17 16 3 19 19 C 1.38230 * 120.00398 * 179.72923 * 18 17 16 20 20 C 1.38234 * 119.99567 * 0.25596 * 19 18 17 21 21 C 1.50701 * 119.99987 * 180.02562 * 20 19 18 22 22 C 1.38240 * 120.00197 * 0.02562 * 20 19 18 23 23 C 1.38231 * 120.00013 * 359.96027 * 22 20 19 24 24 H 1.09006 * 109.47109 * 299.31276 * 1 2 3 25 25 H 1.09001 * 109.47385 * 59.30774 * 1 2 3 26 26 H 1.08994 * 109.47369 * 179.31114 * 1 2 3 27 27 H 1.08994 * 109.47134 * 240.00548 * 2 1 3 28 28 H 1.09000 * 109.47597 * 119.99709 * 2 1 3 29 29 H 1.08995 * 109.47184 * 280.32279 * 4 3 2 30 30 H 1.09004 * 109.46988 * 40.32426 * 4 3 2 31 31 H 1.08998 * 109.47111 * 304.94368 * 5 4 3 32 32 H 1.08999 * 109.46949 * 64.94021 * 5 4 3 33 33 H 1.08998 * 109.46976 * 300.00043 * 6 5 4 34 34 H 1.08995 * 109.47292 * 60.00372 * 6 5 4 35 35 H 1.08998 * 109.47351 * 299.99784 * 7 6 5 36 36 H 1.08999 * 109.47236 * 59.99759 * 7 6 5 37 37 H 0.96993 * 119.99858 * 180.02562 * 11 10 8 38 38 H 1.09006 * 109.47309 * 173.95508 * 16 3 2 39 39 H 1.09001 * 109.47322 * 53.95431 * 16 3 2 40 40 H 1.08007 * 119.99744 * 0.02562 * 18 17 16 41 41 H 1.07993 * 120.00313 * 180.27262 * 19 18 17 42 42 H 1.09001 * 109.47113 * 89.99988 * 21 20 19 43 43 H 1.09000 * 109.47442 * 210.00228 * 21 20 19 44 44 H 1.08995 * 109.46998 * 329.99688 * 21 20 19 45 45 H 1.07998 * 119.99856 * 179.97438 * 22 20 19 46 46 H 1.08001 * 119.99972 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.7931 2.0235 -1.3034 5 6 1.8445 3.5442 -1.1424 6 6 1.4871 4.2103 -2.4726 7 6 1.5392 5.7310 -2.3115 8 6 1.1878 6.3871 -3.6219 9 1 0.9515 5.7803 -4.4834 10 6 1.1691 7.7622 -3.7211 11 7 1.4575 8.5012 -2.6721 12 14 0.7343 8.5755 -5.3456 13 1 -0.7324 8.7991 -5.4102 14 1 1.4387 9.8786 -5.4509 15 1 1.1508 7.6955 -6.4669 16 6 3.4390 1.4416 0.3743 17 6 3.5983 1.0051 1.8078 18 6 3.8116 -0.3281 2.1048 19 6 3.9633 -0.7278 3.4193 20 6 3.8965 0.2050 4.4373 21 6 4.0625 -0.2306 5.8705 22 6 3.6774 1.5373 4.1408 23 6 3.5259 1.9370 2.8263 24 1 -0.3634 0.5031 0.8961 25 1 -0.3634 0.5245 -0.8837 26 1 -0.3634 -1.0275 -0.0124 27 1 1.8933 -0.5137 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 2.5663 1.7059 -2.0029 30 1 0.8150 1.7316 -1.6859 31 1 1.1312 3.8529 -0.3782 32 1 2.8490 3.8441 -0.8440 33 1 2.2005 3.9016 -3.2367 34 1 0.4826 3.9104 -2.7708 35 1 0.8261 6.0401 -1.5473 36 1 2.5439 6.0306 -2.0134 37 1 1.4439 9.4685 -2.7418 38 1 3.8038 2.4627 0.2628 39 1 4.0122 0.7783 -0.2734 40 1 3.8645 -1.0567 1.3093 41 1 4.1344 -1.7686 3.6509 42 1 5.1165 -0.1848 6.1444 43 1 3.4892 0.4309 6.5200 44 1 3.7018 -1.2529 5.9836 45 1 3.6248 2.2659 4.9363 46 1 3.3552 2.9780 2.5946 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699499508.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:37 Heat of formation + Delta-G solvation = -4.228861 kcal Electronic energy + Delta-G solvation = -20645.515076 eV Core-core repulsion = 17726.691025 eV Total energy + Delta-G solvation = -2918.824051 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.77462 -37.79974 -34.55870 -33.30231 -32.31633 -31.04966 -30.64502 -28.95063 -27.18431 -24.77632 -24.11057 -22.85206 -21.98972 -21.00802 -20.18060 -19.94855 -16.48560 -16.21302 -15.64799 -15.62471 -15.30260 -14.69244 -14.51262 -14.38618 -14.16910 -13.87627 -13.51945 -13.25790 -12.66361 -12.55471 -12.35335 -12.21068 -12.14014 -11.83471 -11.66203 -11.56188 -11.32249 -11.14862 -11.02132 -10.92607 -10.75209 -10.44616 -10.40489 -10.26240 -9.56463 -9.22368 -8.98828 -8.94924 -8.63459 -8.29826 -8.19139 -5.94951 -3.96965 1.22470 1.34098 3.34515 3.40471 3.43952 3.57146 4.15031 4.50058 4.65426 4.68838 4.84368 4.93017 5.02606 5.04479 5.21375 5.35149 5.37175 5.38879 5.40523 5.43468 5.52072 5.56887 5.62474 5.66605 5.75740 5.79154 5.92165 6.00046 6.01055 6.04047 6.18545 6.23706 6.31323 6.35929 6.49582 6.58686 6.60142 6.86239 6.93356 7.03382 7.14500 7.18855 7.31736 7.74721 7.91254 8.06687 8.49520 9.10684 9.66679 11.16429 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.025706 B = 0.002888 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.986375 B = 9692.104086 C =10430.027141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.043 3.957 3 N -0.532 5.532 4 C 0.054 3.946 5 C -0.111 4.111 6 C -0.109 4.109 7 C 0.022 3.978 8 C -0.519 4.519 9 H 0.054 0.946 10 C 0.055 3.945 11 N -0.896 5.896 12 Si 0.891 3.109 13 H -0.281 1.281 14 H -0.287 1.287 15 H -0.274 1.274 16 C 0.090 3.910 17 C -0.076 4.076 18 C -0.113 4.113 19 C -0.124 4.124 20 C -0.093 4.093 21 C -0.113 4.113 22 C -0.121 4.121 23 C -0.092 4.092 24 H 0.061 0.939 25 H 0.057 0.943 26 H 0.053 0.947 27 H 0.028 0.972 28 H 0.076 0.924 29 H 0.031 0.969 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.053 0.947 33 H 0.043 0.957 34 H 0.046 0.954 35 H 0.015 0.985 36 H 0.014 0.986 37 H 0.260 0.740 38 H 0.089 0.911 39 H 0.039 0.961 40 H 0.117 0.883 41 H 0.118 0.882 42 H 0.068 0.932 43 H 0.065 0.935 44 H 0.063 0.937 45 H 0.120 0.880 46 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.606 -20.549 13.621 25.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.085 4.085 3 N -0.256 5.256 4 C -0.073 4.073 5 C -0.149 4.149 6 C -0.147 4.147 7 C -0.015 4.015 8 C -0.558 4.558 9 H 0.072 0.928 10 C -0.146 4.146 11 N -0.536 5.536 12 Si 0.719 3.281 13 H -0.207 1.207 14 H -0.213 1.213 15 H -0.199 1.199 16 C -0.037 4.037 17 C -0.076 4.076 18 C -0.132 4.132 19 C -0.142 4.142 20 C -0.093 4.093 21 C -0.170 4.170 22 C -0.139 4.139 23 C -0.110 4.110 24 H 0.080 0.920 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.047 0.953 28 H 0.094 0.906 29 H 0.050 0.950 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.034 0.966 36 H 0.032 0.968 37 H 0.069 0.931 38 H 0.107 0.893 39 H 0.057 0.943 40 H 0.135 0.865 41 H 0.136 0.864 42 H 0.086 0.914 43 H 0.084 0.916 44 H 0.082 0.918 45 H 0.138 0.862 46 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 4.354 -20.111 14.010 24.893 hybrid contribution 0.214 0.119 -1.520 1.539 sum 4.568 -19.992 12.491 24.012 Atomic orbital electron populations 1.21771 0.94950 1.00929 1.02771 1.22191 0.96281 0.89457 1.00525 1.62076 1.16239 1.16652 1.30652 1.22308 1.00770 0.96164 0.88098 1.21633 1.01529 0.92109 0.99611 1.21598 0.99614 0.99100 0.94426 1.19082 0.97069 0.88549 0.96828 1.21298 1.46288 0.91371 0.96795 0.92807 1.25035 0.95530 0.97602 0.96390 1.69970 1.49416 1.05064 1.29138 0.86620 0.78460 0.78831 0.84232 1.20690 1.21256 1.19939 1.21099 0.89210 1.01942 0.91472 1.19786 0.99224 0.93278 0.95349 1.21017 1.00415 0.95377 0.96369 1.20932 1.01769 0.99020 0.92494 1.19896 1.00045 0.93691 0.95644 1.20775 1.02049 1.01600 0.92555 1.21047 1.00934 0.95296 0.96637 1.21092 0.97970 0.99896 0.92090 0.91953 0.92447 0.92807 0.95334 0.90554 0.95050 0.90755 0.91657 0.92837 0.93772 0.93541 0.96634 0.96768 0.93075 0.89308 0.94304 0.86520 0.86444 0.91371 0.91615 0.91767 0.86173 0.85622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.99 37.15 0.37 -1.24 16 2 C 0.04 0.50 5.52 -3.82 -0.02 0.48 16 3 N -0.53 -7.06 4.38 -236.07 -1.03 -8.10 16 4 C 0.05 0.78 4.83 -3.83 -0.02 0.76 16 5 C -0.11 -1.94 5.25 -26.73 -0.14 -2.08 16 6 C -0.11 -2.29 5.15 -26.73 -0.14 -2.43 16 7 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 8 C -0.52 -15.07 9.11 -34.44 -0.31 -15.38 16 9 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 10 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 11 N -0.90 -27.50 13.29 55.43 0.74 -26.76 16 12 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 13 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 14 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 15 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 16 C 0.09 1.11 4.94 -4.98 -0.02 1.09 16 17 C -0.08 -0.89 4.94 -104.62 -0.52 -1.41 16 18 C -0.11 -1.18 7.85 -39.58 -0.31 -1.49 16 19 C -0.12 -1.20 9.70 -39.59 -0.38 -1.58 16 20 C -0.09 -0.90 5.88 -104.62 -0.62 -1.52 16 21 C -0.11 -0.80 10.01 36.01 0.36 -0.44 16 22 C -0.12 -1.28 9.70 -39.58 -0.38 -1.66 16 23 C -0.09 -1.09 9.70 -39.58 -0.38 -1.47 16 24 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.06 0.66 6.51 -51.93 -0.34 0.33 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.03 0.32 8.05 -51.93 -0.42 -0.10 16 28 H 0.08 0.84 5.13 -51.93 -0.27 0.57 16 29 H 0.03 0.45 8.00 -51.93 -0.42 0.03 16 30 H 0.07 1.07 6.23 -51.93 -0.32 0.74 16 31 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.05 0.93 6.95 -51.93 -0.36 0.57 16 33 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.26 7.49 8.31 -40.82 -0.34 7.16 16 38 H 0.09 1.16 6.66 -51.93 -0.35 0.82 16 39 H 0.04 0.45 8.06 -51.93 -0.42 0.03 16 40 H 0.12 1.06 7.73 -52.48 -0.41 0.65 16 41 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 42 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.06 0.42 8.09 -51.93 -0.42 0.00 16 44 H 0.06 0.39 8.09 -51.93 -0.42 -0.03 16 45 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 46 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 LS Contribution 366.40 15.07 5.52 5.52 Total: -1.00 -30.92 366.40 -10.88 -41.80 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -8.32 Total: -3.06 kcal Atomic # 6 Polarization: -23.66 SS G_CDS: -2.75 Total: -26.41 kcal Atomic # 7 Polarization: -34.56 SS G_CDS: -0.30 Total: -34.86 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.92 -10.88 -41.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699499508.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.570 kcal (2) G-P(sol) polarization free energy of solvation -30.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds