Wall clock time and date at job start Mon Mar 30 2020 07:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46912 * 109.47052 * 2 1 4 4 C 1.46896 * 110.99912 * 288.11529 * 3 2 1 5 5 C 1.52999 * 109.47320 * 160.32153 * 4 3 2 6 6 C 1.53001 * 109.47361 * 184.94408 * 5 4 3 7 7 C 1.53000 * 109.46834 * 180.02562 * 6 5 4 8 8 C 1.50707 * 109.46845 * 179.97438 * 7 6 5 9 9 H 1.07992 * 119.99689 * 359.97438 * 8 7 6 10 10 C 1.37878 * 119.99715 * 180.02562 * 8 7 6 11 11 N 1.31520 * 120.00195 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 119.99684 * 179.97438 * 10 8 7 13 13 H 1.48507 * 109.47037 * 90.00251 * 12 10 8 14 14 H 1.48503 * 109.47195 * 209.99568 * 12 10 8 15 15 H 1.48500 * 109.47110 * 330.00027 * 12 10 8 16 16 C 1.46894 * 110.99801 * 164.16266 * 3 2 1 17 17 C 1.50701 * 109.47409 * 293.95142 * 16 3 2 18 18 C 1.38238 * 119.99989 * 90.00209 * 17 16 3 19 19 C 1.38230 * 120.00398 * 179.72923 * 18 17 16 20 20 C 1.38234 * 119.99567 * 0.25596 * 19 18 17 21 21 C 1.50701 * 119.99987 * 180.02562 * 20 19 18 22 22 C 1.38240 * 120.00197 * 0.02562 * 20 19 18 23 23 C 1.38231 * 120.00013 * 359.96027 * 22 20 19 24 24 H 1.09006 * 109.47109 * 299.31276 * 1 2 3 25 25 H 1.09001 * 109.47385 * 59.30774 * 1 2 3 26 26 H 1.08994 * 109.47369 * 179.31114 * 1 2 3 27 27 H 1.08994 * 109.47134 * 240.00548 * 2 1 3 28 28 H 1.09000 * 109.47597 * 119.99709 * 2 1 3 29 29 H 1.08995 * 109.47184 * 280.32279 * 4 3 2 30 30 H 1.09004 * 109.46988 * 40.32426 * 4 3 2 31 31 H 1.08998 * 109.47111 * 304.94368 * 5 4 3 32 32 H 1.08999 * 109.46949 * 64.94021 * 5 4 3 33 33 H 1.08998 * 109.46976 * 300.00043 * 6 5 4 34 34 H 1.08995 * 109.47292 * 60.00372 * 6 5 4 35 35 H 1.08998 * 109.47351 * 299.99784 * 7 6 5 36 36 H 1.08999 * 109.47236 * 59.99759 * 7 6 5 37 37 H 0.96993 * 119.99858 * 180.02562 * 11 10 8 38 38 H 1.09006 * 109.47309 * 173.95508 * 16 3 2 39 39 H 1.09001 * 109.47322 * 53.95431 * 16 3 2 40 40 H 1.08007 * 119.99744 * 0.02562 * 18 17 16 41 41 H 1.07993 * 120.00313 * 180.27262 * 19 18 17 42 42 H 1.09001 * 109.47113 * 89.99988 * 21 20 19 43 43 H 1.09000 * 109.47442 * 210.00228 * 21 20 19 44 44 H 1.08995 * 109.46998 * 329.99688 * 21 20 19 45 45 H 1.07998 * 119.99856 * 179.97438 * 22 20 19 46 46 H 1.08001 * 119.99972 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.7931 2.0235 -1.3034 5 6 1.8445 3.5442 -1.1424 6 6 1.4871 4.2103 -2.4726 7 6 1.5392 5.7310 -2.3115 8 6 1.1878 6.3871 -3.6219 9 1 0.9515 5.7803 -4.4834 10 6 1.1691 7.7622 -3.7211 11 7 1.4575 8.5012 -2.6721 12 14 0.7343 8.5755 -5.3456 13 1 -0.7324 8.7991 -5.4102 14 1 1.4387 9.8786 -5.4509 15 1 1.1508 7.6955 -6.4669 16 6 3.4390 1.4416 0.3743 17 6 3.5983 1.0051 1.8078 18 6 3.8116 -0.3281 2.1048 19 6 3.9633 -0.7278 3.4193 20 6 3.8965 0.2050 4.4373 21 6 4.0625 -0.2306 5.8705 22 6 3.6774 1.5373 4.1408 23 6 3.5259 1.9370 2.8263 24 1 -0.3634 0.5031 0.8961 25 1 -0.3634 0.5245 -0.8837 26 1 -0.3634 -1.0275 -0.0124 27 1 1.8933 -0.5137 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 2.5663 1.7059 -2.0029 30 1 0.8150 1.7316 -1.6859 31 1 1.1312 3.8529 -0.3782 32 1 2.8490 3.8441 -0.8440 33 1 2.2005 3.9016 -3.2367 34 1 0.4826 3.9104 -2.7708 35 1 0.8261 6.0401 -1.5473 36 1 2.5439 6.0306 -2.0134 37 1 1.4439 9.4685 -2.7418 38 1 3.8038 2.4627 0.2628 39 1 4.0122 0.7783 -0.2734 40 1 3.8645 -1.0567 1.3093 41 1 4.1344 -1.7686 3.6509 42 1 5.1165 -0.1848 6.1444 43 1 3.4892 0.4309 6.5200 44 1 3.7018 -1.2529 5.9836 45 1 3.6248 2.2659 4.9363 46 1 3.3552 2.9780 2.5946 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699499508.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:37 Heat of formation + Delta-G solvation = -19.551037 kcal Electronic energy + Delta-G solvation = -20646.179496 eV Core-core repulsion = 17726.691025 eV Total energy + Delta-G solvation = -2919.488471 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.61576 -38.82067 -36.32070 -34.47993 -33.91424 -31.95727 -31.64977 -30.34851 -28.36656 -26.37439 -25.05931 -23.87294 -23.33033 -21.89531 -21.73315 -21.17978 -18.43699 -17.40285 -16.70518 -16.53387 -16.45062 -16.12792 -15.95363 -15.54940 -15.20935 -14.52692 -14.47921 -14.31911 -14.26943 -13.75061 -13.70597 -13.35396 -13.18061 -12.95573 -12.84170 -12.79729 -12.64632 -12.47188 -12.33499 -12.16115 -12.01490 -11.94003 -11.76388 -11.59259 -11.30376 -11.26269 -10.95942 -10.55433 -9.77484 -9.45933 -9.18443 -8.19772 -6.31379 0.41867 0.53477 1.39114 1.41071 1.52164 2.40767 2.71172 3.12797 3.18096 3.81982 3.91408 4.00454 4.11124 4.16183 4.19289 4.22114 4.29030 4.46229 4.56181 4.58964 4.62197 4.64096 4.67673 4.71609 4.83383 4.86206 4.89237 4.94062 4.99458 5.01355 5.11389 5.21840 5.23192 5.29179 5.31434 5.36381 5.39379 5.53108 5.56143 5.73657 5.75481 5.78179 5.87176 6.11051 6.18612 6.21136 6.26517 6.86289 7.37904 8.92234 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.025706 B = 0.002888 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.986375 B = 9692.104086 C =10430.027141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.045 3.955 3 N -0.544 5.544 4 C 0.065 3.935 5 C -0.099 4.099 6 C -0.096 4.096 7 C 0.024 3.976 8 C -0.544 4.544 9 H 0.060 0.940 10 C -0.004 4.004 11 N -0.935 5.935 12 Si 0.967 3.033 13 H -0.271 1.271 14 H -0.281 1.281 15 H -0.262 1.262 16 C 0.093 3.907 17 C -0.090 4.090 18 C -0.116 4.116 19 C -0.127 4.127 20 C -0.096 4.096 21 C -0.112 4.112 22 C -0.132 4.132 23 C -0.113 4.113 24 H 0.049 0.951 25 H 0.049 0.951 26 H 0.074 0.926 27 H 0.038 0.962 28 H 0.083 0.917 29 H 0.038 0.962 30 H 0.079 0.921 31 H 0.051 0.949 32 H 0.048 0.952 33 H 0.050 0.950 34 H 0.051 0.949 35 H -0.012 1.012 36 H -0.012 1.012 37 H 0.263 0.737 38 H 0.072 0.928 39 H 0.048 0.952 40 H 0.132 0.868 41 H 0.142 0.858 42 H 0.077 0.923 43 H 0.070 0.930 44 H 0.077 0.923 45 H 0.131 0.869 46 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.548 -22.616 13.251 26.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.083 4.083 3 N -0.268 5.268 4 C -0.063 4.063 5 C -0.137 4.137 6 C -0.134 4.134 7 C -0.013 4.013 8 C -0.582 4.582 9 H 0.079 0.921 10 C -0.201 4.201 11 N -0.576 5.576 12 Si 0.791 3.209 13 H -0.197 1.197 14 H -0.207 1.207 15 H -0.186 1.186 16 C -0.034 4.034 17 C -0.091 4.091 18 C -0.134 4.134 19 C -0.144 4.144 20 C -0.097 4.097 21 C -0.168 4.168 22 C -0.150 4.150 23 C -0.132 4.132 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.093 0.907 27 H 0.056 0.944 28 H 0.102 0.898 29 H 0.057 0.943 30 H 0.098 0.902 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.006 0.994 36 H 0.006 0.994 37 H 0.072 0.928 38 H 0.091 0.909 39 H 0.066 0.934 40 H 0.150 0.850 41 H 0.160 0.840 42 H 0.096 0.904 43 H 0.089 0.911 44 H 0.096 0.904 45 H 0.149 0.851 46 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 4.297 -22.198 13.645 26.408 hybrid contribution 0.253 0.757 -1.316 1.539 sum 4.550 -21.440 12.330 25.148 Atomic orbital electron populations 1.21762 0.94644 1.02018 1.01759 1.22236 0.96474 0.88264 1.01290 1.62003 1.17029 1.18076 1.29696 1.22079 1.01364 0.93707 0.89117 1.21444 1.00691 0.94468 0.97145 1.21398 1.00170 0.95343 0.96490 1.19005 0.94537 0.92428 0.95313 1.21746 1.46512 0.92177 0.97749 0.92141 1.26037 0.95158 0.98374 1.00549 1.70111 1.50250 1.05532 1.31667 0.85426 0.78493 0.77721 0.79279 1.19687 1.20680 1.18648 1.21048 0.88759 1.01273 0.92347 1.19780 1.00476 0.94083 0.94729 1.21201 0.99941 0.94903 0.97361 1.21266 1.00829 1.00268 0.92068 1.20263 0.98887 0.93256 0.97256 1.20822 1.02846 1.02401 0.90756 1.21249 1.01056 0.96343 0.96344 1.21151 0.99298 0.99593 0.93109 0.93158 0.93200 0.90698 0.94355 0.89843 0.94337 0.90220 0.92994 0.93335 0.93140 0.93027 0.99409 0.99368 0.92783 0.90930 0.93358 0.85027 0.84007 0.90405 0.91134 0.90447 0.85123 0.86855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 9.99 71.98 0.72 -2.24 16 2 C 0.04 0.95 5.52 86.30 0.48 1.42 16 3 N -0.54 -14.14 4.38 -900.80 -3.95 -18.09 16 4 C 0.06 1.84 4.83 86.30 0.42 2.26 16 5 C -0.10 -3.55 5.25 30.59 0.16 -3.39 16 6 C -0.10 -4.07 5.15 30.59 0.16 -3.92 16 7 C 0.02 1.34 4.97 29.85 0.15 1.49 16 8 C -0.54 -32.00 9.11 25.60 0.23 -31.77 16 9 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 10 C 0.00 -0.22 5.46 84.65 0.46 0.24 16 11 N -0.94 -58.61 13.29 21.45 0.28 -58.33 16 12 Si 0.97 45.21 29.54 68.60 2.03 47.23 16 13 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 14 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 15 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 16 C 0.09 2.28 4.94 85.56 0.42 2.71 16 17 C -0.09 -2.10 4.94 -19.86 -0.10 -2.20 16 18 C -0.12 -2.22 7.85 22.27 0.17 -2.05 16 19 C -0.13 -2.16 9.70 22.27 0.22 -1.95 16 20 C -0.10 -1.72 5.88 -19.86 -0.12 -1.84 16 21 C -0.11 -1.32 10.01 71.24 0.71 -0.61 16 22 C -0.13 -2.74 9.70 22.27 0.22 -2.53 16 23 C -0.11 -2.74 9.70 22.27 0.22 -2.53 16 24 H 0.05 1.14 8.14 -2.38 -0.02 1.12 16 25 H 0.05 1.09 6.51 -2.39 -0.02 1.07 16 26 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.04 0.75 8.05 -2.39 -0.02 0.73 16 28 H 0.08 1.67 5.13 -2.39 -0.01 1.66 16 29 H 0.04 1.05 8.00 -2.39 -0.02 1.03 16 30 H 0.08 2.19 6.23 -2.38 -0.01 2.18 16 31 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.05 1.76 6.95 -2.39 -0.02 1.75 16 33 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 35 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 36 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 37 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 38 H 0.07 1.98 6.66 -2.38 -0.02 1.96 16 39 H 0.05 1.08 8.06 -2.39 -0.02 1.06 16 40 H 0.13 2.07 7.73 -2.91 -0.02 2.05 16 41 H 0.14 1.69 8.06 -2.91 -0.02 1.67 16 42 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 43 H 0.07 0.77 8.09 -2.39 -0.02 0.75 16 44 H 0.08 0.72 8.09 -2.39 -0.02 0.70 16 45 H 0.13 2.30 8.06 -2.91 -0.02 2.27 16 46 H 0.11 2.90 8.06 -2.91 -0.02 2.87 16 Total: -1.00 -66.98 366.40 3.79 -63.20 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: 0.91 Total: 12.87 kcal Atomic # 6 Polarization: -51.40 SS G_CDS: 4.52 Total: -46.89 kcal Atomic # 7 Polarization: -72.75 SS G_CDS: -3.66 Total: -76.41 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.23 kcal Total: -66.98 3.79 -63.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699499508.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.645 kcal (2) G-P(sol) polarization free energy of solvation -66.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds