Wall clock time and date at job start Mon Mar 30 2020 07:11:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46898 * 109.47093 * 2 1 4 4 C 1.46897 * 111.00489 * 284.23100 * 3 2 1 5 5 H 1.09007 * 109.46970 * 297.99035 * 4 3 2 6 6 C 1.50698 * 109.47536 * 177.98992 * 4 3 2 7 7 H 1.08001 * 119.99948 * 324.24031 * 6 4 3 8 8 C 1.37876 * 119.99866 * 144.24345 * 6 4 3 9 9 N 1.31521 * 119.99634 * 185.46310 * 8 6 4 10 10 Si 1.86799 * 120.00249 * 5.45904 * 8 6 4 11 11 H 1.48498 * 109.46794 * 93.54671 * 10 8 6 12 12 H 1.48500 * 109.47055 * 213.54576 * 10 8 6 13 13 H 1.48499 * 109.47173 * 333.54369 * 10 8 6 14 14 C 1.50701 * 109.47251 * 57.98656 * 4 3 2 15 15 C 1.38236 * 120.00221 * 236.20114 * 14 4 3 16 16 C 1.38235 * 119.99832 * 179.78426 * 15 14 4 17 17 C 1.38233 * 120.00257 * 0.44553 * 16 15 14 18 18 C 1.38231 * 119.99871 * 359.80232 * 17 16 15 19 19 C 1.38235 * 120.00208 * 359.97438 * 18 17 16 20 20 C 1.46896 * 111.00300 * 160.27273 * 3 2 1 21 21 H 1.08999 * 109.46883 * 322.95039 * 20 3 2 22 22 C 1.53007 * 109.47029 * 82.94437 * 20 3 2 23 23 C 1.52999 * 109.47600 * 202.94884 * 20 3 2 24 24 C 1.52998 * 109.47218 * 53.90098 * 23 20 3 25 25 C 1.53005 * 109.47124 * 173.90608 * 23 20 3 26 26 H 1.09000 * 109.47388 * 316.13363 * 1 2 3 27 27 H 1.09003 * 109.46931 * 76.12938 * 1 2 3 28 28 H 1.08993 * 109.47241 * 196.12780 * 1 2 3 29 29 H 1.09000 * 109.47313 * 240.00077 * 2 1 3 30 30 H 1.08994 * 109.47163 * 119.99869 * 2 1 3 31 31 H 0.96998 * 119.99665 * 180.02562 * 9 8 6 32 32 H 1.07995 * 120.00167 * 359.97438 * 15 14 4 33 33 H 1.08002 * 119.99881 * 180.27543 * 16 15 14 34 34 H 1.08003 * 120.00250 * 179.83410 * 17 16 15 35 35 H 1.07997 * 119.99726 * 179.97438 * 18 17 16 36 36 H 1.07996 * 120.00477 * 179.97438 * 19 18 17 37 37 H 1.08995 * 109.46906 * 186.74230 * 22 20 3 38 38 H 1.08994 * 109.47141 * 306.74665 * 22 20 3 39 39 H 1.09000 * 109.46360 * 66.74141 * 22 20 3 40 40 H 1.09007 * 109.46800 * 293.90328 * 23 20 3 41 41 H 1.09000 * 109.46559 * 55.07611 * 24 23 20 42 42 H 1.08998 * 109.47024 * 175.07157 * 24 23 20 43 43 H 1.08994 * 109.47202 * 295.07885 * 24 23 20 44 44 H 1.08997 * 109.47088 * 59.99993 * 25 23 20 45 45 H 1.09000 * 109.47012 * 179.97438 * 25 23 20 46 46 H 1.08997 * 109.46891 * 299.99413 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8774 1.9938 -1.3293 5 1 2.4814 1.4408 -2.0487 6 6 2.3429 3.4261 -1.2783 7 1 2.1639 4.0210 -0.3949 8 6 2.9974 3.9771 -2.3596 9 7 3.4983 5.1904 -2.2766 10 14 3.1727 3.0005 -3.9423 11 1 2.0539 3.3380 -4.8586 12 1 4.4643 3.3389 -4.5922 13 1 3.1392 1.5482 -3.6340 14 6 0.4308 1.9504 -1.7494 15 6 0.0742 1.3420 -2.9383 16 6 -1.2533 1.2983 -3.3215 17 6 -2.2232 1.8712 -2.5202 18 6 -1.8660 2.4841 -1.3338 19 6 -0.5391 2.5237 -0.9483 20 6 3.4122 1.4511 0.4629 21 1 3.5653 0.7229 1.2594 22 6 4.3525 1.1371 -0.7026 23 6 3.7077 2.8558 0.9924 24 6 2.6712 3.2291 2.0541 25 6 5.1060 2.8834 1.6127 26 1 -0.3634 0.7409 0.7121 27 1 -0.3633 0.2464 -0.9977 28 1 -0.3633 -0.9871 0.2854 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 3.9584 5.5782 -3.0374 32 1 0.8324 0.8981 -3.5664 33 1 -1.5323 0.8191 -4.2482 34 1 -3.2600 1.8394 -2.8209 35 1 -2.6238 2.9320 -0.7080 36 1 -0.2600 3.0029 -0.0216 37 1 5.3763 1.0681 -0.3350 38 1 4.0647 0.1888 -1.1563 39 1 4.2863 1.9308 -1.4467 40 1 3.6603 3.5710 0.1711 41 1 2.6577 2.4663 2.8325 42 1 2.9318 4.1920 2.4934 43 1 1.6859 3.2949 1.5926 44 1 5.8444 2.6175 0.8563 45 1 5.3167 3.8843 1.9895 46 1 5.1533 2.1683 2.4339 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706426665.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:37 Heat of formation + Delta-G solvation = 38.513515 kcal Electronic energy + Delta-G solvation = -23668.089531 eV Core-core repulsion = 20751.118928 eV Total energy + Delta-G solvation = -2916.970603 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.55067 -37.63627 -34.16893 -32.88114 -30.83831 -30.46894 -30.07566 -28.08953 -26.57762 -25.89199 -23.19655 -22.39423 -21.86276 -21.04039 -19.51342 -18.42285 -17.00586 -16.21448 -15.32841 -14.79026 -14.42494 -14.17594 -13.82947 -13.71761 -13.40787 -13.03335 -12.77433 -12.67398 -12.41728 -12.13952 -11.98412 -11.73804 -11.55063 -11.44951 -11.14291 -11.09459 -11.02522 -10.79584 -10.48412 -10.31059 -10.23348 -10.02034 -9.98283 -9.86101 -9.65315 -9.42753 -9.11500 -8.41634 -8.17750 -7.65685 -7.20636 -6.19110 -4.11388 2.10827 2.17658 3.20005 3.25273 3.31191 4.29783 4.49428 4.89556 5.13438 5.53195 5.55378 5.61420 5.68449 5.74153 5.84425 5.95440 5.97461 6.03211 6.08713 6.13278 6.23949 6.26686 6.29390 6.33108 6.38038 6.46241 6.49343 6.57570 6.62558 6.64227 6.75499 6.79628 6.85931 6.87550 6.89829 7.07280 7.12104 7.16710 7.24597 7.36825 7.42722 7.56520 7.77527 7.81613 8.05611 8.20049 8.58723 8.89486 9.42266 10.90937 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.014998 B = 0.009826 C = 0.007557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.457304 B = 2848.897777 C = 3704.355619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.051 3.949 3 N -0.518 5.518 4 C 0.199 3.801 5 H 0.030 0.970 6 C -0.488 4.488 7 H 0.099 0.901 8 C 0.078 3.922 9 N -0.886 5.886 10 Si 0.851 3.149 11 H -0.274 1.274 12 H -0.288 1.288 13 H -0.259 1.259 14 C -0.022 4.022 15 C -0.149 4.149 16 C -0.126 4.126 17 C -0.148 4.148 18 C -0.131 4.131 19 C -0.082 4.082 20 C 0.115 3.885 21 H 0.050 0.950 22 C -0.185 4.185 23 C -0.112 4.112 24 C -0.121 4.121 25 C -0.142 4.142 26 H 0.064 0.936 27 H 0.072 0.928 28 H 0.035 0.965 29 H 0.020 0.980 30 H 0.055 0.945 31 H 0.265 0.735 32 H 0.104 0.896 33 H 0.107 0.893 34 H 0.106 0.894 35 H 0.109 0.891 36 H 0.124 0.876 37 H 0.045 0.955 38 H 0.034 0.966 39 H 0.082 0.918 40 H 0.141 0.859 41 H 0.028 0.972 42 H 0.031 0.969 43 H 0.066 0.934 44 H 0.046 0.954 45 H 0.045 0.955 46 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.895 -7.721 3.207 9.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.078 4.078 3 N -0.241 5.241 4 C 0.093 3.907 5 H 0.047 0.953 6 C -0.525 4.525 7 H 0.117 0.883 8 C -0.125 4.125 9 N -0.523 5.523 10 Si 0.679 3.321 11 H -0.199 1.199 12 H -0.214 1.214 13 H -0.184 1.184 14 C -0.023 4.023 15 C -0.168 4.168 16 C -0.144 4.144 17 C -0.166 4.166 18 C -0.149 4.149 19 C -0.100 4.100 20 C 0.007 3.993 21 H 0.068 0.932 22 C -0.244 4.244 23 C -0.130 4.130 24 C -0.178 4.178 25 C -0.200 4.200 26 H 0.083 0.917 27 H 0.090 0.910 28 H 0.054 0.946 29 H 0.038 0.962 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.122 0.878 33 H 0.125 0.875 34 H 0.125 0.875 35 H 0.127 0.873 36 H 0.142 0.858 37 H 0.064 0.936 38 H 0.053 0.947 39 H 0.101 0.899 40 H 0.158 0.842 41 H 0.047 0.953 42 H 0.051 0.949 43 H 0.085 0.915 44 H 0.065 0.935 45 H 0.064 0.936 46 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -4.067 -7.305 3.441 9.041 hybrid contribution 0.645 -0.990 -1.676 2.051 sum -3.422 -8.295 1.766 9.145 Atomic orbital electron populations 1.22352 0.95657 0.99964 1.03531 1.22010 0.95903 0.90939 0.98902 1.62316 1.19413 1.14428 1.27958 1.19104 0.88361 0.96576 0.86696 0.95269 1.20918 1.34852 0.93995 1.02761 0.88293 1.24904 0.95025 0.94823 0.97789 1.69864 1.36526 1.14897 1.31033 0.87298 0.77979 0.81469 0.85328 1.19933 1.21419 1.18411 1.20452 0.97390 0.91705 0.92803 1.20996 0.95668 1.02139 0.97968 1.20883 0.93295 1.00973 0.99217 1.20825 0.98298 1.01479 0.96040 1.21061 0.96479 1.00556 0.96840 1.20922 0.91461 0.97793 0.99813 1.21335 0.86556 0.96892 0.94552 0.93173 1.22557 0.99224 1.01310 1.01266 1.21865 0.92033 0.98621 1.00515 1.21539 1.00780 0.98140 0.97387 1.21876 0.98536 1.00144 0.99459 0.91748 0.90973 0.94567 0.96198 0.92608 0.92457 0.87783 0.87537 0.87545 0.87283 0.85833 0.93597 0.94672 0.89890 0.84193 0.95266 0.94945 0.91497 0.93470 0.93557 0.94670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.57 8.24 37.16 0.31 -2.26 16 2 C 0.05 0.88 5.33 -3.82 -0.02 0.86 16 3 N -0.52 -9.90 3.22 -221.49 -0.71 -10.61 16 4 C 0.20 4.26 0.64 -70.02 -0.04 4.22 16 5 H 0.03 0.68 3.13 -51.93 -0.16 0.51 16 6 C -0.49 -11.88 4.77 -34.44 -0.16 -12.04 16 7 H 0.10 2.62 5.69 -52.49 -0.30 2.32 16 8 C 0.08 2.03 4.97 -17.82 -0.09 1.94 16 9 N -0.89 -24.69 13.96 55.43 0.77 -23.91 16 10 Si 0.85 20.29 25.25 -169.99 -4.29 16.00 16 11 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 13 H -0.26 -5.88 5.77 56.52 0.33 -5.55 16 14 C -0.02 -0.45 2.42 -104.62 -0.25 -0.71 16 15 C -0.15 -2.91 7.93 -39.58 -0.31 -3.22 16 16 C -0.13 -2.15 9.87 -39.58 -0.39 -2.54 16 17 C -0.15 -2.39 10.05 -39.59 -0.40 -2.79 16 18 C -0.13 -2.21 9.89 -39.59 -0.39 -2.60 16 19 C -0.08 -1.56 6.35 -39.58 -0.25 -1.81 16 20 C 0.12 2.15 1.83 -67.71 -0.12 2.02 16 21 H 0.05 0.88 7.53 -51.93 -0.39 0.49 16 22 C -0.19 -3.54 7.52 37.16 0.28 -3.26 16 23 C -0.11 -2.16 1.86 -90.62 -0.17 -2.33 16 24 C -0.12 -2.20 8.48 37.16 0.32 -1.88 16 25 C -0.14 -2.42 8.97 37.16 0.33 -2.09 16 26 H 0.06 1.07 7.16 -51.93 -0.37 0.70 16 27 H 0.07 1.26 3.89 -51.93 -0.20 1.06 16 28 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.02 0.36 7.66 -51.93 -0.40 -0.04 16 30 H 0.06 0.88 7.56 -51.93 -0.39 0.49 16 31 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 32 H 0.10 2.04 7.41 -52.49 -0.39 1.65 16 33 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 34 H 0.11 1.43 8.06 -52.48 -0.42 1.01 16 35 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 36 H 0.12 2.42 8.06 -52.49 -0.42 2.00 16 37 H 0.05 0.79 6.93 -51.93 -0.36 0.43 16 38 H 0.03 0.64 7.50 -51.93 -0.39 0.25 16 39 H 0.08 1.81 4.22 -51.93 -0.22 1.59 16 40 H 0.14 3.27 4.44 -51.93 -0.23 3.03 16 41 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.07 1.30 7.06 -51.93 -0.37 0.94 16 44 H 0.05 0.80 6.76 -51.93 -0.35 0.45 16 45 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 46 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 329.70 15.07 4.97 4.97 Total: -1.00 -25.55 329.70 -8.17 -33.72 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: -7.54 Total: 8.33 kcal Atomic # 6 Polarization: -27.13 SS G_CDS: -1.37 Total: -28.50 kcal Atomic # 7 Polarization: -34.58 SS G_CDS: 0.06 Total: -34.52 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -4.29 Total: 16.00 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -25.55 -8.17 -33.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706426665.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.233 kcal (2) G-P(sol) polarization free energy of solvation -25.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds