Wall clock time and date at job start Mon Mar 30 2020 07:11:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46898 * 109.47093 * 2 1 4 4 C 1.46897 * 111.00489 * 284.23100 * 3 2 1 5 5 H 1.09007 * 109.46970 * 297.99035 * 4 3 2 6 6 C 1.50698 * 109.47536 * 177.98992 * 4 3 2 7 7 H 1.08001 * 119.99948 * 324.24031 * 6 4 3 8 8 C 1.37876 * 119.99866 * 144.24345 * 6 4 3 9 9 N 1.31521 * 119.99634 * 185.46310 * 8 6 4 10 10 Si 1.86799 * 120.00249 * 5.45904 * 8 6 4 11 11 H 1.48498 * 109.46794 * 93.54671 * 10 8 6 12 12 H 1.48500 * 109.47055 * 213.54576 * 10 8 6 13 13 H 1.48499 * 109.47173 * 333.54369 * 10 8 6 14 14 C 1.50701 * 109.47251 * 57.98656 * 4 3 2 15 15 C 1.38236 * 120.00221 * 236.20114 * 14 4 3 16 16 C 1.38235 * 119.99832 * 179.78426 * 15 14 4 17 17 C 1.38233 * 120.00257 * 0.44553 * 16 15 14 18 18 C 1.38231 * 119.99871 * 359.80232 * 17 16 15 19 19 C 1.38235 * 120.00208 * 359.97438 * 18 17 16 20 20 C 1.46896 * 111.00300 * 160.27273 * 3 2 1 21 21 H 1.08999 * 109.46883 * 322.95039 * 20 3 2 22 22 C 1.53007 * 109.47029 * 82.94437 * 20 3 2 23 23 C 1.52999 * 109.47600 * 202.94884 * 20 3 2 24 24 C 1.52998 * 109.47218 * 53.90098 * 23 20 3 25 25 C 1.53005 * 109.47124 * 173.90608 * 23 20 3 26 26 H 1.09000 * 109.47388 * 316.13363 * 1 2 3 27 27 H 1.09003 * 109.46931 * 76.12938 * 1 2 3 28 28 H 1.08993 * 109.47241 * 196.12780 * 1 2 3 29 29 H 1.09000 * 109.47313 * 240.00077 * 2 1 3 30 30 H 1.08994 * 109.47163 * 119.99869 * 2 1 3 31 31 H 0.96998 * 119.99665 * 180.02562 * 9 8 6 32 32 H 1.07995 * 120.00167 * 359.97438 * 15 14 4 33 33 H 1.08002 * 119.99881 * 180.27543 * 16 15 14 34 34 H 1.08003 * 120.00250 * 179.83410 * 17 16 15 35 35 H 1.07997 * 119.99726 * 179.97438 * 18 17 16 36 36 H 1.07996 * 120.00477 * 179.97438 * 19 18 17 37 37 H 1.08995 * 109.46906 * 186.74230 * 22 20 3 38 38 H 1.08994 * 109.47141 * 306.74665 * 22 20 3 39 39 H 1.09000 * 109.46360 * 66.74141 * 22 20 3 40 40 H 1.09007 * 109.46800 * 293.90328 * 23 20 3 41 41 H 1.09000 * 109.46559 * 55.07611 * 24 23 20 42 42 H 1.08998 * 109.47024 * 175.07157 * 24 23 20 43 43 H 1.08994 * 109.47202 * 295.07885 * 24 23 20 44 44 H 1.08997 * 109.47088 * 59.99993 * 25 23 20 45 45 H 1.09000 * 109.47012 * 179.97438 * 25 23 20 46 46 H 1.08997 * 109.46891 * 299.99413 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8774 1.9938 -1.3293 5 1 2.4814 1.4408 -2.0487 6 6 2.3429 3.4261 -1.2783 7 1 2.1639 4.0210 -0.3949 8 6 2.9974 3.9771 -2.3596 9 7 3.4983 5.1904 -2.2766 10 14 3.1727 3.0005 -3.9423 11 1 2.0539 3.3380 -4.8586 12 1 4.4643 3.3389 -4.5922 13 1 3.1392 1.5482 -3.6340 14 6 0.4308 1.9504 -1.7494 15 6 0.0742 1.3420 -2.9383 16 6 -1.2533 1.2983 -3.3215 17 6 -2.2232 1.8712 -2.5202 18 6 -1.8660 2.4841 -1.3338 19 6 -0.5391 2.5237 -0.9483 20 6 3.4122 1.4511 0.4629 21 1 3.5653 0.7229 1.2594 22 6 4.3525 1.1371 -0.7026 23 6 3.7077 2.8558 0.9924 24 6 2.6712 3.2291 2.0541 25 6 5.1060 2.8834 1.6127 26 1 -0.3634 0.7409 0.7121 27 1 -0.3633 0.2464 -0.9977 28 1 -0.3633 -0.9871 0.2854 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 3.9584 5.5782 -3.0374 32 1 0.8324 0.8981 -3.5664 33 1 -1.5323 0.8191 -4.2482 34 1 -3.2600 1.8394 -2.8209 35 1 -2.6238 2.9320 -0.7080 36 1 -0.2600 3.0029 -0.0216 37 1 5.3763 1.0681 -0.3350 38 1 4.0647 0.1888 -1.1563 39 1 4.2863 1.9308 -1.4467 40 1 3.6603 3.5710 0.1711 41 1 2.6577 2.4663 2.8325 42 1 2.9318 4.1920 2.4934 43 1 1.6859 3.2949 1.5926 44 1 5.8444 2.6175 0.8563 45 1 5.3167 3.8843 1.9895 46 1 5.1533 2.1683 2.4339 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706426665.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:37 Heat of formation + Delta-G solvation = 26.042185 kcal Electronic energy + Delta-G solvation = -23668.630328 eV Core-core repulsion = 20751.118928 eV Total energy + Delta-G solvation = -2917.511400 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.05185 -39.09571 -35.63537 -34.75426 -32.41118 -31.90264 -31.48660 -29.61742 -28.21453 -27.36550 -24.84355 -23.87658 -23.28429 -22.45743 -21.06333 -19.98376 -18.88243 -17.65543 -16.85795 -16.41295 -15.97429 -15.61734 -15.37625 -15.25931 -14.90578 -14.72585 -14.36189 -14.09236 -13.99827 -13.57655 -13.39657 -13.21411 -13.05248 -12.90121 -12.82588 -12.66324 -12.57949 -12.26348 -12.02318 -11.84762 -11.76102 -11.62438 -11.51259 -11.43277 -11.23428 -11.05512 -10.88640 -10.26741 -9.57693 -9.11206 -8.76382 -8.20265 -6.10638 0.69540 0.77873 1.26479 1.31927 1.33858 2.33521 3.00170 3.23004 3.43012 4.09795 4.19754 4.27909 4.30874 4.38109 4.40460 4.47767 4.56992 4.58023 4.66027 4.73701 4.80969 4.83494 4.87639 4.89105 4.95470 5.02273 5.06790 5.13736 5.19665 5.24345 5.29778 5.34325 5.37212 5.40847 5.53230 5.55193 5.61515 5.63716 5.78527 5.81578 5.87815 6.07868 6.14594 6.28504 6.36316 6.61304 6.87496 6.90466 7.44830 8.93378 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.014998 B = 0.009826 C = 0.007557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.457304 B = 2848.897777 C = 3704.355619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.051 3.949 3 N -0.520 5.520 4 C 0.209 3.791 5 H 0.014 0.986 6 C -0.455 4.455 7 H 0.071 0.929 8 C 0.033 3.967 9 N -0.934 5.934 10 Si 0.891 3.109 11 H -0.280 1.280 12 H -0.295 1.295 13 H -0.244 1.244 14 C -0.042 4.042 15 C -0.167 4.167 16 C -0.125 4.125 17 C -0.139 4.139 18 C -0.128 4.128 19 C -0.094 4.094 20 C 0.114 3.886 21 H 0.073 0.927 22 C -0.182 4.182 23 C -0.112 4.112 24 C -0.111 4.111 25 C -0.136 4.136 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.013 0.987 30 H 0.075 0.925 31 H 0.260 0.740 32 H 0.096 0.904 33 H 0.134 0.866 34 H 0.143 0.857 35 H 0.136 0.864 36 H 0.109 0.891 37 H 0.062 0.938 38 H 0.039 0.961 39 H 0.051 0.949 40 H 0.095 0.905 41 H 0.049 0.951 42 H 0.032 0.968 43 H 0.046 0.954 44 H 0.043 0.957 45 H 0.044 0.956 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.634 -9.966 3.863 12.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.077 4.077 3 N -0.243 5.243 4 C 0.101 3.899 5 H 0.032 0.968 6 C -0.494 4.494 7 H 0.089 0.911 8 C -0.165 4.165 9 N -0.575 5.575 10 Si 0.719 3.281 11 H -0.206 1.206 12 H -0.222 1.222 13 H -0.168 1.168 14 C -0.043 4.043 15 C -0.186 4.186 16 C -0.143 4.143 17 C -0.157 4.157 18 C -0.146 4.146 19 C -0.113 4.113 20 C 0.005 3.995 21 H 0.091 0.909 22 C -0.240 4.240 23 C -0.131 4.131 24 C -0.169 4.169 25 C -0.194 4.194 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.031 0.969 30 H 0.093 0.907 31 H 0.070 0.930 32 H 0.114 0.886 33 H 0.152 0.848 34 H 0.161 0.839 35 H 0.154 0.846 36 H 0.127 0.873 37 H 0.081 0.919 38 H 0.058 0.942 39 H 0.070 0.930 40 H 0.113 0.887 41 H 0.068 0.932 42 H 0.051 0.949 43 H 0.065 0.935 44 H 0.062 0.938 45 H 0.063 0.937 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.818 -9.583 4.103 11.938 hybrid contribution 1.084 -0.341 -1.789 2.119 sum -4.734 -9.924 2.315 11.236 Atomic orbital electron populations 1.22248 0.94756 1.00986 1.02757 1.22086 0.96668 0.89537 0.99430 1.62253 1.19775 1.15876 1.26390 1.18860 0.89208 0.94348 0.87460 0.96832 1.20966 1.32444 0.95094 1.00875 0.91114 1.25348 0.95811 0.95328 1.00024 1.69979 1.39268 1.16701 1.31513 0.86650 0.77078 0.81518 0.82859 1.20620 1.22206 1.16820 1.20290 0.96664 0.93581 0.93790 1.21082 0.96932 1.02913 0.97672 1.21218 0.92337 1.00469 1.00284 1.21243 0.99905 0.99571 0.95012 1.21370 0.95906 0.99862 0.97467 1.20865 0.92593 0.98375 0.99450 1.21405 0.86262 0.96900 0.94896 0.90932 1.22496 1.00525 1.00268 1.00718 1.21676 0.93886 0.97955 0.99544 1.21420 0.99288 0.98822 0.97340 1.21793 0.96764 1.00878 0.99967 0.92341 0.92073 0.92385 0.96902 0.90662 0.93035 0.88554 0.84814 0.83928 0.84642 0.87318 0.91906 0.94174 0.93045 0.88697 0.93220 0.94937 0.93451 0.93784 0.93666 0.92195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.55 8.24 71.98 0.59 -3.96 16 2 C 0.05 1.66 5.33 86.31 0.46 2.12 16 3 N -0.52 -19.52 3.22 -854.67 -2.75 -22.27 16 4 C 0.21 8.99 0.64 43.42 0.03 9.01 16 5 H 0.01 0.65 3.13 -2.38 -0.01 0.64 16 6 C -0.46 -23.01 4.77 25.60 0.12 -22.89 16 7 H 0.07 3.95 5.69 -2.91 -0.02 3.93 16 8 C 0.03 1.79 4.97 84.65 0.42 2.21 16 9 N -0.93 -54.77 13.96 21.45 0.30 -54.48 16 10 Si 0.89 43.07 25.25 68.60 1.73 44.80 16 11 H -0.28 -13.67 7.11 99.48 0.71 -12.96 16 12 H -0.30 -14.43 7.11 99.48 0.71 -13.73 16 13 H -0.24 -11.03 5.77 99.48 0.57 -10.45 16 14 C -0.04 -1.69 2.42 -19.86 -0.05 -1.74 16 15 C -0.17 -6.31 7.93 22.27 0.18 -6.13 16 16 C -0.13 -3.92 9.87 22.27 0.22 -3.70 16 17 C -0.14 -3.97 10.05 22.27 0.22 -3.74 16 18 C -0.13 -3.97 9.89 22.27 0.22 -3.75 16 19 C -0.09 -3.53 6.35 22.27 0.14 -3.38 16 20 C 0.11 4.12 1.83 44.92 0.08 4.20 16 21 H 0.07 2.33 7.53 -2.39 -0.02 2.32 16 22 C -0.18 -6.84 7.52 71.98 0.54 -6.30 16 23 C -0.11 -4.32 1.86 -10.79 -0.02 -4.34 16 24 C -0.11 -4.00 8.48 71.98 0.61 -3.39 16 25 C -0.14 -4.50 8.97 71.98 0.65 -3.85 16 26 H 0.06 1.83 7.16 -2.39 -0.02 1.81 16 27 H 0.06 2.01 3.89 -2.39 -0.01 2.00 16 28 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.01 0.44 7.66 -2.39 -0.02 0.42 16 30 H 0.07 2.15 7.56 -2.39 -0.02 2.13 16 31 H 0.26 14.75 8.31 -92.71 -0.77 13.97 16 32 H 0.10 3.70 7.41 -2.91 -0.02 3.68 16 33 H 0.13 3.41 8.06 -2.91 -0.02 3.38 16 34 H 0.14 3.07 8.06 -2.91 -0.02 3.04 16 35 H 0.14 3.43 8.06 -2.91 -0.02 3.41 16 36 H 0.11 4.32 8.06 -2.91 -0.02 4.29 16 37 H 0.06 2.10 6.93 -2.39 -0.02 2.08 16 38 H 0.04 1.43 7.50 -2.39 -0.02 1.41 16 39 H 0.05 2.28 4.22 -2.39 -0.01 2.27 16 40 H 0.10 4.62 4.44 -2.38 -0.01 4.60 16 41 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.05 1.87 7.06 -2.39 -0.02 1.85 16 44 H 0.04 1.45 6.76 -2.39 -0.02 1.44 16 45 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 46 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -57.33 329.70 4.51 -52.82 By element: Atomic # 1 Polarization: 27.95 SS G_CDS: 0.81 Total: 28.76 kcal Atomic # 6 Polarization: -54.05 SS G_CDS: 4.42 Total: -49.63 kcal Atomic # 7 Polarization: -74.29 SS G_CDS: -2.45 Total: -76.75 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 1.73 Total: 44.80 kcal Total: -57.33 4.51 -52.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706426665.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.863 kcal (2) G-P(sol) polarization free energy of solvation -57.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds