Wall clock time and date at job start Mon Mar 30 2020 07:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47248 * 2 1 4 4 C 1.53006 * 109.46886 * 240.00693 * 2 1 3 5 5 N 1.46499 * 109.47053 * 65.00075 * 4 2 1 6 6 C 1.46490 * 120.00271 * 90.00101 * 5 4 2 7 7 C 1.50703 * 109.47511 * 89.99700 * 6 5 4 8 8 H 1.08002 * 119.99919 * 0.02562 * 7 6 5 9 9 C 1.37872 * 120.00284 * 179.97438 * 7 6 5 10 10 N 1.31516 * 120.00140 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 120.00006 * 179.97438 * 9 7 6 12 12 H 1.48495 * 109.47151 * 60.00014 * 11 9 7 13 13 H 1.48497 * 109.47080 * 180.02562 * 11 9 7 14 14 H 1.48507 * 109.46992 * 300.00014 * 11 9 7 15 15 C 1.39674 * 119.99587 * 269.99593 * 5 4 2 16 16 C 1.38910 * 120.07645 * 359.72715 * 15 5 4 17 17 C 1.38107 * 119.92443 * 179.76732 * 16 15 5 18 18 C 1.38285 * 120.07686 * 0.51121 * 17 16 15 19 19 C 1.38284 * 120.14601 * 359.74478 * 18 17 16 20 20 C 1.38103 * 120.07946 * 359.97438 * 19 18 17 21 21 C 1.52999 * 109.47628 * 120.00681 * 2 1 3 22 22 C 1.52997 * 109.47317 * 180.02562 * 21 2 1 23 23 C 1.52992 * 109.46961 * 59.99659 * 21 2 1 24 24 C 1.53006 * 109.46623 * 299.99941 * 21 2 1 25 25 H 1.09001 * 109.47142 * 59.99487 * 1 2 3 26 26 H 1.08996 * 109.46698 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46838 * 299.99037 * 1 2 3 28 28 H 1.09005 * 109.46600 * 184.99824 * 4 2 1 29 29 H 1.09001 * 109.47164 * 304.99488 * 4 2 1 30 30 H 1.09002 * 109.47385 * 209.99721 * 6 5 4 31 31 H 1.09000 * 109.47532 * 329.99525 * 6 5 4 32 32 H 0.96995 * 120.00234 * 179.97438 * 10 9 7 33 33 H 1.08002 * 120.03650 * 359.97438 * 16 15 5 34 34 H 1.08004 * 119.96490 * 180.25091 * 17 16 15 35 35 H 1.07996 * 119.92691 * 179.71807 * 18 17 16 36 36 H 1.08006 * 119.96123 * 179.97438 * 19 18 17 37 37 H 1.07996 * 120.04524 * 179.97438 * 20 19 18 38 38 H 1.09002 * 109.47153 * 299.99641 * 22 21 2 39 39 H 1.09001 * 109.46832 * 179.97438 * 22 21 2 40 40 H 1.09004 * 109.47261 * 59.99813 * 22 21 2 41 41 H 1.09001 * 109.47066 * 180.02562 * 23 21 2 42 42 H 1.08996 * 109.47747 * 300.00196 * 23 21 2 43 43 H 1.09002 * 109.47103 * 60.00608 * 23 21 2 44 44 H 1.08993 * 109.46955 * 300.00075 * 24 21 2 45 45 H 1.09000 * 109.47050 * 59.99904 * 24 21 2 46 46 H 1.09001 * 109.47002 * 179.97438 * 24 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 7 1.6524 0.0356 -2.4424 6 6 2.5426 1.0699 -2.9750 7 6 3.4832 0.4549 -3.9792 8 1 3.4234 -0.6009 -4.1989 9 6 4.4192 1.2401 -4.6181 10 7 4.4917 2.5258 -4.3509 11 14 5.5854 0.4775 -5.8622 12 1 4.8022 -0.1219 -6.9723 13 1 6.4878 1.5260 -6.4022 14 1 6.3940 -0.5780 -5.2006 15 6 0.4341 -0.2291 -3.0720 16 6 -0.4087 -1.2135 -2.5716 17 6 -1.6148 -1.4694 -3.1938 18 6 -1.9792 -0.7543 -4.3199 19 6 -1.1402 0.2227 -4.8238 20 6 0.0647 0.4877 -4.2032 21 6 2.0401 -0.7214 1.2491 22 6 3.5701 -0.7208 1.2494 23 6 1.5301 -2.1638 1.2490 24 6 1.5301 -0.0002 2.4984 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8901 28 1 3.1264 -0.7993 -1.2057 29 1 1.6054 -1.7197 -1.2954 30 1 1.9496 1.8452 -3.4602 31 1 3.1179 1.5092 -2.1601 32 1 5.1504 3.0781 -4.8001 33 1 -0.1225 -1.7758 -1.6951 34 1 -2.2724 -2.2318 -2.8030 35 1 -2.9209 -0.9595 -4.8072 36 1 -1.4276 0.7792 -5.7037 37 1 0.7197 1.2506 -4.5974 38 1 3.9338 -1.2343 0.3593 39 1 3.9335 -1.2343 2.1395 40 1 3.9331 0.3071 1.2497 41 1 1.8932 -2.6776 2.1391 42 1 0.4402 -2.1639 1.2490 43 1 1.8935 -2.6775 0.3589 44 1 1.8934 1.0274 2.4984 45 1 0.4401 -0.0002 2.4985 46 1 1.8932 -0.5143 3.3884 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000711174922.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:01 Heat of formation + Delta-G solvation = 11.787092 kcal Electronic energy + Delta-G solvation = -22473.551021 eV Core-core repulsion = 19555.421474 eV Total energy + Delta-G solvation = -2918.129547 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.49571 -37.98350 -35.30285 -32.77728 -31.09999 -29.90224 -29.19816 -28.01965 -27.21961 -26.58990 -24.71866 -23.16139 -22.27680 -21.05954 -19.67367 -17.92651 -16.95687 -16.40584 -15.51231 -14.95179 -14.72998 -14.40994 -14.16504 -13.95535 -13.71833 -13.43985 -13.08465 -12.77851 -12.63715 -12.44737 -12.06460 -11.87021 -11.70960 -11.68032 -11.55060 -11.23858 -11.08600 -11.00006 -10.78961 -10.68332 -10.64611 -10.43249 -10.26652 -10.12290 -10.05750 -9.73247 -9.60662 -8.82891 -8.48674 -8.20861 -6.43418 -5.99251 -4.15524 2.14780 2.36858 3.28343 3.32830 3.36202 4.12323 4.41447 4.62668 4.92903 4.98199 4.99066 5.23164 5.37577 5.50910 5.53358 5.59782 5.64920 5.73713 5.77445 5.78492 5.88617 5.90622 6.03462 6.05070 6.07292 6.13607 6.16283 6.22092 6.27717 6.33555 6.37250 6.43020 6.47879 6.58354 6.67925 6.70656 6.78499 7.03047 7.13334 7.23032 7.30637 7.40372 7.66078 7.82854 8.18548 8.32937 8.55435 8.93782 9.51233 10.97123 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.011851 B = 0.007294 C = 0.004999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2362.121869 B = 3837.652666 C = 5599.309059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.098 4.098 3 H 0.071 0.929 4 C 0.129 3.871 5 N -0.608 5.608 6 C 0.252 3.748 7 C -0.530 4.530 8 H 0.058 0.942 9 C 0.062 3.938 10 N -0.895 5.895 11 Si 0.894 3.106 12 H -0.276 1.276 13 H -0.287 1.287 14 H -0.277 1.277 15 C 0.241 3.759 16 C -0.217 4.217 17 C -0.082 4.082 18 C -0.206 4.206 19 C -0.078 4.078 20 C -0.190 4.190 21 C -0.062 4.062 22 C -0.145 4.145 23 C -0.145 4.145 24 C -0.140 4.140 25 H 0.062 0.938 26 H 0.054 0.946 27 H 0.045 0.955 28 H 0.076 0.924 29 H 0.063 0.937 30 H 0.034 0.966 31 H 0.029 0.971 32 H 0.264 0.736 33 H 0.116 0.884 34 H 0.106 0.894 35 H 0.103 0.897 36 H 0.109 0.891 37 H 0.130 0.870 38 H 0.061 0.939 39 H 0.049 0.951 40 H 0.055 0.945 41 H 0.049 0.951 42 H 0.056 0.944 43 H 0.057 0.943 44 H 0.052 0.948 45 H 0.056 0.944 46 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.789 -6.229 9.631 13.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.118 4.118 3 H 0.089 0.911 4 C 0.004 3.996 5 N -0.312 5.312 6 C 0.132 3.868 7 C -0.569 4.569 8 H 0.076 0.924 9 C -0.140 4.140 10 N -0.534 5.534 11 Si 0.722 3.278 12 H -0.201 1.201 13 H -0.212 1.212 14 H -0.203 1.203 15 C 0.135 3.865 16 C -0.240 4.240 17 C -0.101 4.101 18 C -0.227 4.227 19 C -0.097 4.097 20 C -0.213 4.213 21 C -0.062 4.062 22 C -0.202 4.202 23 C -0.202 4.202 24 C -0.197 4.197 25 H 0.081 0.919 26 H 0.073 0.927 27 H 0.064 0.936 28 H 0.095 0.905 29 H 0.081 0.919 30 H 0.052 0.948 31 H 0.047 0.953 32 H 0.073 0.927 33 H 0.134 0.866 34 H 0.124 0.876 35 H 0.122 0.878 36 H 0.127 0.873 37 H 0.148 0.852 38 H 0.080 0.920 39 H 0.068 0.932 40 H 0.074 0.926 41 H 0.068 0.932 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.072 0.928 45 H 0.075 0.925 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -7.448 -5.992 9.680 13.605 hybrid contribution 0.800 -0.304 -0.769 1.150 sum -6.649 -6.296 8.911 12.777 Atomic orbital electron populations 1.22090 0.95340 1.01428 1.01514 1.21642 0.96051 1.00161 0.93972 0.91067 1.21463 1.00127 0.94138 0.83835 1.47128 1.16914 1.39968 1.27192 1.19219 0.87954 0.85664 0.93949 1.21556 1.16643 0.95562 1.23172 0.92366 1.24942 0.97354 0.94763 0.96916 1.69918 1.35780 1.04804 1.42912 0.86615 0.80705 0.78822 0.81661 1.20144 1.21219 1.20280 1.17900 0.85688 0.91996 0.90956 1.20702 0.96693 1.02644 1.04008 1.20661 0.95688 0.98314 0.95389 1.20629 1.00797 1.01426 0.99812 1.20800 0.93775 0.96770 0.98364 1.20909 0.98397 1.04179 0.97794 1.20498 0.95457 0.95326 0.94955 1.21949 0.94681 1.02059 1.01549 1.21975 1.01084 0.95667 1.01454 1.21904 1.01023 1.00118 0.96704 0.91864 0.92670 0.93564 0.90533 0.91896 0.94848 0.95316 0.92651 0.86615 0.87618 0.87840 0.87300 0.85231 0.92000 0.93222 0.92560 0.93219 0.92459 0.92388 0.92843 0.92516 0.93205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 6.94 37.16 0.26 -1.82 16 2 C -0.10 -1.46 1.96 -90.62 -0.18 -1.64 16 3 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 4 C 0.13 2.22 4.23 -4.04 -0.02 2.21 16 5 N -0.61 -12.56 2.45 -173.12 -0.42 -12.98 16 6 C 0.25 6.21 4.91 -5.20 -0.03 6.19 16 7 C -0.53 -14.37 9.39 -34.44 -0.32 -14.69 16 8 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 9 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 10 N -0.90 -25.58 13.29 55.43 0.74 -24.84 16 11 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 13 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 14 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 15 C 0.24 4.81 5.37 -83.79 -0.45 4.36 16 16 C -0.22 -3.75 7.16 -39.38 -0.28 -4.04 16 17 C -0.08 -1.30 10.04 -39.61 -0.40 -1.70 16 18 C -0.21 -3.33 10.04 -39.55 -0.40 -3.73 16 19 C -0.08 -1.38 10.04 -39.61 -0.40 -1.78 16 20 C -0.19 -3.90 9.21 -39.38 -0.36 -4.26 16 21 C -0.06 -0.76 0.57 -154.51 -0.09 -0.85 16 22 C -0.15 -1.83 8.13 37.16 0.30 -1.53 16 23 C -0.14 -1.62 7.77 37.15 0.29 -1.33 16 24 C -0.14 -1.55 8.12 37.16 0.30 -1.25 16 25 H 0.06 1.05 5.86 -51.93 -0.30 0.74 16 26 H 0.05 0.72 4.96 -51.93 -0.26 0.47 16 27 H 0.05 0.59 6.43 -51.93 -0.33 0.26 16 28 H 0.08 1.41 6.11 -51.93 -0.32 1.09 16 29 H 0.06 1.02 4.75 -51.93 -0.25 0.77 16 30 H 0.03 0.88 6.20 -51.93 -0.32 0.56 16 31 H 0.03 0.75 8.07 -51.93 -0.42 0.33 16 32 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 33 H 0.12 1.83 4.43 -52.49 -0.23 1.59 16 34 H 0.11 1.39 8.06 -52.48 -0.42 0.97 16 35 H 0.10 1.42 8.06 -52.49 -0.42 1.00 16 36 H 0.11 1.69 8.06 -52.48 -0.42 1.27 16 37 H 0.13 2.92 6.14 -52.49 -0.32 2.60 16 38 H 0.06 0.83 6.32 -51.93 -0.33 0.51 16 39 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.06 0.62 6.43 -51.93 -0.33 0.28 16 43 H 0.06 0.67 6.54 -51.93 -0.34 0.33 16 44 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.06 0.61 6.43 -51.93 -0.33 0.27 16 46 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 343.74 15.07 5.18 5.18 Total: -1.00 -27.73 343.74 -8.84 -36.57 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -7.44 Total: 3.99 kcal Atomic # 6 Polarization: -22.37 SS G_CDS: -1.87 Total: -24.24 kcal Atomic # 7 Polarization: -38.14 SS G_CDS: 0.31 Total: -37.82 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -27.73 -8.84 -36.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711174922.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.356 kcal (2) G-P(sol) polarization free energy of solvation -27.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds