Wall clock time and date at job start Mon Mar 30 2020 07:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47248 * 2 1 4 4 C 1.53006 * 109.46886 * 240.00693 * 2 1 3 5 5 N 1.46499 * 109.47053 * 65.00075 * 4 2 1 6 6 C 1.46490 * 120.00271 * 90.00101 * 5 4 2 7 7 C 1.50703 * 109.47511 * 89.99700 * 6 5 4 8 8 H 1.08002 * 119.99919 * 0.02562 * 7 6 5 9 9 C 1.37872 * 120.00284 * 179.97438 * 7 6 5 10 10 N 1.31516 * 120.00140 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 120.00006 * 179.97438 * 9 7 6 12 12 H 1.48495 * 109.47151 * 60.00014 * 11 9 7 13 13 H 1.48497 * 109.47080 * 180.02562 * 11 9 7 14 14 H 1.48507 * 109.46992 * 300.00014 * 11 9 7 15 15 C 1.39674 * 119.99587 * 269.99593 * 5 4 2 16 16 C 1.38910 * 120.07645 * 359.72715 * 15 5 4 17 17 C 1.38107 * 119.92443 * 179.76732 * 16 15 5 18 18 C 1.38285 * 120.07686 * 0.51121 * 17 16 15 19 19 C 1.38284 * 120.14601 * 359.74478 * 18 17 16 20 20 C 1.38103 * 120.07946 * 359.97438 * 19 18 17 21 21 C 1.52999 * 109.47628 * 120.00681 * 2 1 3 22 22 C 1.52997 * 109.47317 * 180.02562 * 21 2 1 23 23 C 1.52992 * 109.46961 * 59.99659 * 21 2 1 24 24 C 1.53006 * 109.46623 * 299.99941 * 21 2 1 25 25 H 1.09001 * 109.47142 * 59.99487 * 1 2 3 26 26 H 1.08996 * 109.46698 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46838 * 299.99037 * 1 2 3 28 28 H 1.09005 * 109.46600 * 184.99824 * 4 2 1 29 29 H 1.09001 * 109.47164 * 304.99488 * 4 2 1 30 30 H 1.09002 * 109.47385 * 209.99721 * 6 5 4 31 31 H 1.09000 * 109.47532 * 329.99525 * 6 5 4 32 32 H 0.96995 * 120.00234 * 179.97438 * 10 9 7 33 33 H 1.08002 * 120.03650 * 359.97438 * 16 15 5 34 34 H 1.08004 * 119.96490 * 180.25091 * 17 16 15 35 35 H 1.07996 * 119.92691 * 179.71807 * 18 17 16 36 36 H 1.08006 * 119.96123 * 179.97438 * 19 18 17 37 37 H 1.07996 * 120.04524 * 179.97438 * 20 19 18 38 38 H 1.09002 * 109.47153 * 299.99641 * 22 21 2 39 39 H 1.09001 * 109.46832 * 179.97438 * 22 21 2 40 40 H 1.09004 * 109.47261 * 59.99813 * 22 21 2 41 41 H 1.09001 * 109.47066 * 180.02562 * 23 21 2 42 42 H 1.08996 * 109.47747 * 300.00196 * 23 21 2 43 43 H 1.09002 * 109.47103 * 60.00608 * 23 21 2 44 44 H 1.08993 * 109.46955 * 300.00075 * 24 21 2 45 45 H 1.09000 * 109.47050 * 59.99904 * 24 21 2 46 46 H 1.09001 * 109.47002 * 179.97438 * 24 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 7 1.6524 0.0356 -2.4424 6 6 2.5426 1.0699 -2.9750 7 6 3.4832 0.4549 -3.9792 8 1 3.4234 -0.6009 -4.1989 9 6 4.4192 1.2401 -4.6181 10 7 4.4917 2.5258 -4.3509 11 14 5.5854 0.4775 -5.8622 12 1 4.8022 -0.1219 -6.9723 13 1 6.4878 1.5260 -6.4022 14 1 6.3940 -0.5780 -5.2006 15 6 0.4341 -0.2291 -3.0720 16 6 -0.4087 -1.2135 -2.5716 17 6 -1.6148 -1.4694 -3.1938 18 6 -1.9792 -0.7543 -4.3199 19 6 -1.1402 0.2227 -4.8238 20 6 0.0647 0.4877 -4.2032 21 6 2.0401 -0.7214 1.2491 22 6 3.5701 -0.7208 1.2494 23 6 1.5301 -2.1638 1.2490 24 6 1.5301 -0.0002 2.4984 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8901 28 1 3.1264 -0.7993 -1.2057 29 1 1.6054 -1.7197 -1.2954 30 1 1.9496 1.8452 -3.4602 31 1 3.1179 1.5092 -2.1601 32 1 5.1504 3.0781 -4.8001 33 1 -0.1225 -1.7758 -1.6951 34 1 -2.2724 -2.2318 -2.8030 35 1 -2.9209 -0.9595 -4.8072 36 1 -1.4276 0.7792 -5.7037 37 1 0.7197 1.2506 -4.5974 38 1 3.9338 -1.2343 0.3593 39 1 3.9335 -1.2343 2.1395 40 1 3.9331 0.3071 1.2497 41 1 1.8932 -2.6776 2.1391 42 1 0.4402 -2.1639 1.2490 43 1 1.8935 -2.6775 0.3589 44 1 1.8934 1.0274 2.4984 45 1 0.4401 -0.0002 2.4985 46 1 1.8932 -0.5143 3.3884 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711174922.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:01 Heat of formation + Delta-G solvation = -0.365197 kcal Electronic energy + Delta-G solvation = -22474.077984 eV Core-core repulsion = 19555.421474 eV Total energy + Delta-G solvation = -2918.656510 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.85312 -39.20479 -36.83622 -34.77271 -32.47739 -31.23861 -30.69273 -29.46646 -28.14717 -27.99609 -26.17595 -24.84126 -23.67586 -22.45813 -21.14464 -19.12085 -18.48598 -18.39562 -16.99391 -16.56331 -16.05636 -15.84130 -15.60474 -15.05188 -14.96429 -14.71324 -14.60859 -14.21495 -14.11959 -13.91908 -13.47944 -13.15105 -13.01098 -12.83974 -12.76502 -12.70678 -12.63726 -12.51750 -12.29976 -12.12027 -11.99107 -11.95005 -11.79747 -11.48131 -11.30507 -11.18072 -11.02379 -10.63950 -10.39109 -9.60779 -8.35758 -7.76569 -6.37150 0.74038 0.96624 1.35380 1.37208 1.45423 2.33248 2.62751 3.06174 3.21531 3.83598 3.91502 3.92599 4.14525 4.24431 4.31330 4.37863 4.47164 4.59689 4.64325 4.74543 4.81400 4.82827 4.84759 4.87525 4.89830 4.96707 5.04568 5.09608 5.11606 5.13888 5.15079 5.20009 5.24703 5.29866 5.34919 5.37985 5.45735 5.61314 5.61535 5.69444 5.73396 5.80753 5.92680 6.08720 6.26980 6.54229 6.85775 7.00993 7.34969 8.83215 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.011851 B = 0.007294 C = 0.004999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2362.121869 B = 3837.652666 C = 5599.309059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.090 4.090 3 H 0.039 0.961 4 C 0.131 3.869 5 N -0.618 5.618 6 C 0.274 3.726 7 C -0.541 4.541 8 H 0.049 0.951 9 C 0.013 3.987 10 N -0.927 5.927 11 Si 0.959 3.041 12 H -0.273 1.273 13 H -0.279 1.279 14 H -0.269 1.269 15 C 0.218 3.782 16 C -0.211 4.211 17 C -0.075 4.075 18 C -0.198 4.198 19 C -0.083 4.083 20 C -0.225 4.225 21 C -0.058 4.058 22 C -0.145 4.145 23 C -0.142 4.142 24 C -0.137 4.137 25 H 0.035 0.965 26 H 0.073 0.927 27 H 0.061 0.939 28 H 0.056 0.944 29 H 0.080 0.920 30 H 0.006 0.994 31 H 0.003 0.997 32 H 0.266 0.734 33 H 0.133 0.867 34 H 0.147 0.853 35 H 0.138 0.862 36 H 0.125 0.875 37 H 0.091 0.909 38 H 0.047 0.953 39 H 0.070 0.930 40 H 0.039 0.961 41 H 0.066 0.934 42 H 0.067 0.933 43 H 0.050 0.950 44 H 0.042 0.958 45 H 0.064 0.936 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.566 -8.893 10.499 16.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.110 4.110 3 H 0.057 0.943 4 C 0.008 3.992 5 N -0.324 5.324 6 C 0.152 3.848 7 C -0.580 4.580 8 H 0.067 0.933 9 C -0.186 4.186 10 N -0.566 5.566 11 Si 0.784 3.216 12 H -0.199 1.199 13 H -0.204 1.204 14 H -0.194 1.194 15 C 0.113 3.887 16 C -0.234 4.234 17 C -0.094 4.094 18 C -0.218 4.218 19 C -0.102 4.102 20 C -0.248 4.248 21 C -0.059 4.059 22 C -0.202 4.202 23 C -0.199 4.199 24 C -0.194 4.194 25 H 0.054 0.946 26 H 0.091 0.909 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.098 0.902 30 H 0.024 0.976 31 H 0.021 0.979 32 H 0.075 0.925 33 H 0.151 0.849 34 H 0.164 0.836 35 H 0.156 0.844 36 H 0.143 0.857 37 H 0.109 0.891 38 H 0.066 0.934 39 H 0.089 0.911 40 H 0.058 0.942 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.069 0.931 44 H 0.061 0.939 45 H 0.083 0.917 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -9.253 -8.676 10.557 16.503 hybrid contribution 1.255 0.526 -1.052 1.720 sum -7.998 -8.150 9.505 14.858 Atomic orbital electron populations 1.21998 0.94231 1.02302 1.00919 1.21527 0.96845 0.98401 0.94250 0.94265 1.21563 0.99181 0.94797 0.83656 1.46946 1.17104 1.39863 1.28536 1.18630 0.87580 0.86181 0.92384 1.21770 1.17277 0.95109 1.23798 0.93315 1.25760 0.98934 0.95160 0.98721 1.70034 1.36559 1.06047 1.44005 0.85600 0.78642 0.78234 0.79171 1.19861 1.20378 1.19383 1.18152 0.85895 0.93332 0.91315 1.20910 0.96682 1.01463 1.04336 1.21145 0.95216 0.98386 0.94625 1.21050 1.01378 0.99817 0.99544 1.21035 0.92909 0.97481 0.98758 1.20828 0.99717 1.04828 0.99443 1.20480 0.94991 0.96326 0.94066 1.21947 0.95270 1.01139 1.01867 1.21953 1.01665 0.94239 1.02022 1.21877 1.01492 0.99556 0.96497 0.94561 0.90868 0.92033 0.92541 0.90187 0.97634 0.97883 0.92460 0.84899 0.83552 0.84393 0.85748 0.89072 0.93422 0.91072 0.94169 0.91463 0.91454 0.93077 0.93865 0.91687 0.91413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.74 6.94 71.98 0.50 -3.24 16 2 C -0.09 -2.72 1.96 -10.79 -0.02 -2.74 16 3 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 4 C 0.13 4.67 4.23 86.38 0.37 5.04 16 5 N -0.62 -27.00 2.45 -701.62 -1.72 -28.72 16 6 C 0.27 14.63 4.91 85.64 0.42 15.05 16 7 C -0.54 -30.87 9.39 25.60 0.24 -30.63 16 8 H 0.05 2.81 7.81 -2.91 -0.02 2.79 16 9 C 0.01 0.76 5.46 84.65 0.46 1.23 16 10 N -0.93 -55.30 13.29 21.45 0.28 -55.01 16 11 Si 0.96 44.76 29.54 68.60 2.03 46.78 16 12 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 13 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 14 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 15 C 0.22 8.91 5.37 38.22 0.21 9.11 16 16 C -0.21 -6.90 7.16 22.40 0.16 -6.74 16 17 C -0.08 -2.11 10.04 22.25 0.22 -1.88 16 18 C -0.20 -5.76 10.04 22.29 0.22 -5.53 16 19 C -0.08 -2.90 10.04 22.25 0.22 -2.68 16 20 C -0.23 -9.68 9.21 22.40 0.21 -9.47 16 21 C -0.06 -1.36 0.57 -52.18 -0.03 -1.39 16 22 C -0.15 -3.65 8.13 71.98 0.59 -3.07 16 23 C -0.14 -2.76 7.77 71.98 0.56 -2.20 16 24 C -0.14 -2.77 8.12 71.98 0.58 -2.19 16 25 H 0.04 1.19 5.86 -2.39 -0.01 1.17 16 26 H 0.07 1.70 4.96 -2.39 -0.01 1.69 16 27 H 0.06 1.47 6.43 -2.39 -0.02 1.46 16 28 H 0.06 2.21 6.11 -2.38 -0.01 2.19 16 29 H 0.08 2.54 4.75 -2.39 -0.01 2.53 16 30 H 0.01 0.33 6.20 -2.39 -0.01 0.32 16 31 H 0.00 0.18 8.07 -2.39 -0.02 0.16 16 32 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 33 H 0.13 3.81 4.43 -2.91 -0.01 3.79 16 34 H 0.15 2.97 8.06 -2.91 -0.02 2.95 16 35 H 0.14 3.11 8.06 -2.91 -0.02 3.08 16 36 H 0.12 3.81 8.06 -2.91 -0.02 3.79 16 37 H 0.09 4.54 6.14 -2.91 -0.02 4.52 16 38 H 0.05 1.32 6.32 -2.39 -0.02 1.30 16 39 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.04 1.11 8.14 -2.38 -0.02 1.09 16 41 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.07 1.19 6.43 -2.39 -0.02 1.17 16 43 H 0.05 1.07 6.54 -2.39 -0.02 1.05 16 44 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 45 H 0.06 1.21 6.43 -2.39 -0.02 1.19 16 46 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -63.42 343.74 6.45 -56.97 By element: Atomic # 1 Polarization: 20.38 SS G_CDS: 0.95 Total: 21.33 kcal Atomic # 6 Polarization: -46.26 SS G_CDS: 4.91 Total: -41.35 kcal Atomic # 7 Polarization: -82.30 SS G_CDS: -1.44 Total: -83.73 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.78 kcal Total: -63.42 6.45 -56.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711174922.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.608 kcal (2) G-P(sol) polarization free energy of solvation -63.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds