Wall clock time and date at job start Mon Mar 30 2020 08:48:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31586 * 1 3 3 Si 1.86791 * 120.00349 * 2 1 4 4 H 1.48502 * 109.47507 * 269.99992 * 3 2 1 5 5 H 1.48501 * 109.47158 * 29.99970 * 3 2 1 6 6 H 1.48505 * 109.47303 * 149.99780 * 3 2 1 7 7 C 1.38623 * 119.99318 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99332 * 179.97438 * 7 2 1 9 9 O 1.34811 * 120.00434 * 0.02562 * 7 2 1 10 10 C 1.35794 * 116.99728 * 185.05363 * 9 7 2 11 11 C 1.38898 * 119.99910 * 354.45705 * 10 9 7 12 12 C 1.38014 * 120.00699 * 179.97438 * 11 10 9 13 13 C 1.38950 * 119.99286 * 359.97438 * 12 11 10 14 14 N 1.39784 * 120.00239 * 179.97438 * 13 12 11 15 15 C 1.46497 * 119.99687 * 180.02562 * 14 13 12 16 16 H 1.08999 * 110.02032 * 34.94336 * 15 14 13 17 17 C 1.53871 * 110.03323 * 273.54324 * 15 14 13 18 18 C 1.54262 * 106.60080 * 240.71567 * 17 15 14 19 19 C 1.54890 * 104.19785 * 23.61309 * 18 17 15 20 20 C 1.54274 * 110.02956 * 156.38150 * 15 14 13 21 21 H 1.09003 * 110.48215 * 214.35632 * 20 15 14 22 22 C 1.52999 * 110.48645 * 336.99307 * 20 15 14 23 23 N 1.46898 * 109.47137 * 185.00343 * 22 20 15 24 24 C 1.38948 * 119.98874 * 0.25879 * 13 12 11 25 25 C 1.38007 * 119.99174 * 359.48183 * 24 13 12 26 26 H 0.96997 * 119.99370 * 0.02562 * 1 2 3 27 27 H 1.08002 * 119.99519 * 359.95877 * 11 10 9 28 28 H 1.07997 * 120.00299 * 179.97438 * 12 11 10 29 29 H 0.97001 * 119.99831 * 0.02562 * 14 13 12 30 30 H 1.08997 * 110.03040 * 0.02562 * 17 15 14 31 31 H 1.09005 * 110.02741 * 121.38573 * 17 15 14 32 32 H 1.09004 * 110.48479 * 142.29411 * 18 17 15 33 33 H 1.08998 * 110.48922 * 264.80104 * 18 17 15 34 34 H 1.08998 * 110.75246 * 80.36593 * 19 18 17 35 35 H 1.08997 * 110.75666 * 203.74275 * 19 18 17 36 36 H 1.08996 * 109.47416 * 305.00188 * 22 20 15 37 37 H 1.08994 * 109.46969 * 65.00423 * 22 20 15 38 38 H 1.00898 * 111.00312 * 180.02562 * 23 22 20 39 39 H 1.00908 * 110.99983 * 303.95541 * 23 22 20 40 40 H 1.07999 * 120.00062 * 179.74591 * 24 13 12 41 41 H 1.08002 * 119.99444 * 180.23679 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2499 1.6176 0.0000 4 1 2.4975 2.0464 -1.4001 5 1 1.4474 2.6526 0.7000 6 1 3.5475 1.4400 0.7001 7 6 2.0088 -1.2006 0.0005 8 1 3.0889 -1.2006 0.0001 9 8 1.3347 -2.3681 0.0005 10 6 2.0702 -3.5045 0.1077 11 6 3.4575 -3.4378 0.0948 12 6 4.2052 -4.5927 0.2042 13 6 3.5699 -5.8223 0.3277 14 7 4.3270 -6.9922 0.4380 15 6 3.6571 -8.2885 0.5677 16 1 2.7370 -8.2932 -0.0167 17 6 3.3437 -8.5743 2.0468 18 6 4.1006 -9.8668 2.4159 19 6 5.2583 -9.9356 1.3891 20 6 4.5937 -9.4174 0.0896 21 1 4.0205 -10.2117 -0.3887 22 6 5.6507 -8.8661 -0.8694 23 7 6.4534 -9.9746 -1.4031 24 6 2.1821 -5.8893 0.3357 25 6 1.4350 -4.7336 0.2316 26 1 -0.4849 0.8401 -0.0004 27 1 3.9512 -2.4820 -0.0010 28 1 5.2838 -4.5407 0.1938 29 1 5.2958 -6.9456 0.4287 30 1 3.6897 -7.7483 2.6681 31 1 2.2714 -8.7177 2.1802 32 1 4.4938 -9.8021 3.4305 33 1 3.4472 -10.7335 2.3156 34 1 6.0796 -9.2847 1.6890 35 1 5.6031 -10.9619 1.2639 36 1 5.1594 -8.3450 -1.6911 37 1 6.2994 -8.1721 -0.3351 38 1 7.1595 -9.6362 -2.0394 39 1 6.8676 -10.5131 -0.6569 40 1 1.6881 -6.8453 0.4275 41 1 0.3563 -4.7853 0.2417 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089147708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:48:40 Heat of formation + Delta-G solvation = -4.087659 kcal Electronic energy + Delta-G solvation = -21013.841162 eV Core-core repulsion = 17893.764229 eV Total energy + Delta-G solvation = -3120.076934 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.69074 -38.58584 -36.53589 -34.37695 -33.30405 -31.97495 -30.20946 -29.09147 -28.22719 -26.43481 -24.93749 -23.88377 -21.99993 -21.02057 -20.63434 -19.28133 -17.76682 -17.30458 -16.70960 -16.15962 -15.48102 -15.02450 -14.81737 -14.50497 -14.37178 -13.76614 -13.54992 -13.46598 -13.18224 -12.94403 -12.63538 -12.42060 -12.34525 -11.68437 -11.47551 -11.30225 -11.22195 -11.01323 -10.91964 -10.86800 -10.77336 -10.72964 -10.47988 -10.30014 -9.22666 -9.13759 -8.95374 -8.41802 -8.14469 -6.36734 -6.30421 -3.87847 2.22953 2.60209 3.19260 3.20020 3.24560 3.83283 4.07400 4.19672 4.42348 4.48721 4.70625 4.75547 5.11787 5.17112 5.21658 5.33086 5.34860 5.41990 5.49136 5.50398 5.59709 5.68464 5.74926 5.82014 5.84561 5.89906 6.04965 6.08560 6.24049 6.25535 6.34965 6.58784 6.84229 6.89110 6.94930 7.13834 7.17096 7.34382 7.48110 7.67591 8.02434 8.13882 8.27461 9.15302 9.90382 10.88150 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.034515 B = 0.003365 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.041942 B = 8318.203446 C = 8698.374948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.036 3.964 3 Si 0.937 3.063 4 H -0.275 1.275 5 H -0.279 1.279 6 H -0.269 1.269 7 C -0.386 4.386 8 H 0.088 0.912 9 O -0.189 6.189 10 C 0.113 3.887 11 C -0.190 4.190 12 C -0.144 4.144 13 C 0.126 3.874 14 N -0.752 5.752 15 C 0.161 3.839 16 H 0.077 0.923 17 C -0.143 4.143 18 C -0.122 4.122 19 C -0.121 4.121 20 C -0.097 4.097 21 H 0.090 0.910 22 C 0.073 3.927 23 N -0.852 5.852 24 C -0.145 4.145 25 C -0.150 4.150 26 H 0.267 0.733 27 H 0.126 0.874 28 H 0.103 0.897 29 H 0.388 0.612 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.026 0.974 38 H 0.340 0.660 39 H 0.337 0.663 40 H 0.111 0.889 41 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.397 -18.231 1.902 21.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.167 4.167 3 Si 0.763 3.237 4 H -0.201 1.201 5 H -0.204 1.204 6 H -0.194 1.194 7 C -0.463 4.463 8 H 0.105 0.895 9 O -0.094 6.094 10 C 0.060 3.940 11 C -0.210 4.210 12 C -0.166 4.166 13 C 0.028 3.972 14 N -0.389 5.389 15 C 0.054 3.946 16 H 0.095 0.905 17 C -0.182 4.182 18 C -0.160 4.160 19 C -0.159 4.159 20 C -0.117 4.117 21 H 0.108 0.892 22 C -0.058 4.058 23 N -0.381 5.381 24 C -0.167 4.167 25 C -0.170 4.170 26 H 0.077 0.923 27 H 0.144 0.856 28 H 0.121 0.879 29 H 0.224 0.776 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.096 0.904 37 H 0.045 0.955 38 H 0.153 0.847 39 H 0.149 0.851 40 H 0.129 0.871 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 10.126 -18.372 1.575 21.037 hybrid contribution 1.700 1.382 0.534 2.255 sum 11.826 -16.991 2.109 20.808 Atomic orbital electron populations 1.70053 1.05827 1.27224 1.47501 1.25211 0.95796 0.98591 0.97114 0.85770 0.78866 0.80555 0.78542 1.20075 1.20415 1.19391 1.21229 0.91558 0.81156 1.52382 0.89502 1.83986 1.33809 1.11120 1.80504 1.19236 0.90130 0.88241 0.96354 1.20978 0.93736 0.98243 1.08036 1.20209 0.98046 0.91077 1.07270 1.17399 0.90727 0.85914 1.03190 1.44465 1.06712 1.02494 1.85195 1.21310 0.95516 0.82923 0.94863 0.90455 1.22776 1.00311 0.97761 0.97347 1.22309 0.97049 0.97965 0.98668 1.22579 0.97814 1.00669 0.94830 1.22284 0.96500 0.97755 0.95111 0.89198 1.21725 0.94726 0.91729 0.97629 1.58754 1.30666 1.26193 1.22511 1.20197 0.91637 0.97187 1.07667 1.20038 0.99278 0.90006 1.07670 0.92329 0.85611 0.87871 0.77627 0.90844 0.91650 0.91938 0.91710 0.91881 0.91596 0.90426 0.95547 0.84749 0.85075 0.87108 0.86601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.21 13.67 55.48 0.76 -25.45 16 2 C 0.04 1.01 5.49 -17.51 -0.10 0.91 16 3 Si 0.94 21.08 29.55 -169.99 -5.02 16.06 16 4 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 5 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 6 H -0.27 -5.82 7.11 56.52 0.40 -5.41 16 7 C -0.39 -11.09 9.48 30.87 0.29 -10.80 16 8 H 0.09 2.31 5.20 -52.48 -0.27 2.04 16 9 O -0.19 -5.54 9.76 -0.03 0.00 -5.54 16 10 C 0.11 2.78 6.65 -39.09 -0.26 2.52 16 11 C -0.19 -4.20 9.16 -39.42 -0.36 -4.56 16 12 C -0.14 -2.66 9.89 -39.40 -0.39 -3.05 16 13 C 0.13 2.14 6.66 -83.70 -0.56 1.58 16 14 N -0.75 -9.75 4.55 -51.04 -0.23 -9.98 16 15 C 0.16 1.79 2.77 -66.81 -0.19 1.61 16 16 H 0.08 0.94 6.50 -51.93 -0.34 0.60 16 17 C -0.14 -1.51 6.59 -25.62 -0.17 -1.68 16 18 C -0.12 -1.04 6.83 -25.07 -0.17 -1.21 16 19 C -0.12 -0.96 5.69 -24.74 -0.14 -1.10 16 20 C -0.10 -0.89 3.05 -88.96 -0.27 -1.16 16 21 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 22 C 0.07 0.66 5.30 -3.83 -0.02 0.64 16 23 N -0.85 -6.73 9.62 -10.37 -0.10 -6.83 16 24 C -0.14 -2.62 9.21 -39.40 -0.36 -2.98 16 25 C -0.15 -3.23 9.98 -39.42 -0.39 -3.63 16 26 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 27 H 0.13 2.80 5.63 -52.49 -0.30 2.50 16 28 H 0.10 1.64 8.06 -52.49 -0.42 1.22 16 29 H 0.39 4.55 6.51 -40.82 -0.27 4.29 16 30 H 0.07 0.91 7.92 -51.93 -0.41 0.50 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.51 7.97 -51.93 -0.41 0.10 16 35 H 0.07 0.46 8.04 -51.93 -0.42 0.04 16 36 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.03 0.24 6.40 -51.93 -0.33 -0.10 16 38 H 0.34 2.29 9.08 -39.29 -0.36 1.93 16 39 H 0.34 2.23 8.28 -39.29 -0.33 1.91 16 40 H 0.11 1.73 6.24 -52.49 -0.33 1.40 16 41 H 0.12 2.42 8.06 -52.49 -0.42 2.00 16 LS Contribution 328.14 15.07 4.94 4.94 Total: -1.00 -31.14 328.14 -8.59 -39.73 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: -5.85 Total: 9.98 kcal Atomic # 6 Polarization: -19.82 SS G_CDS: -3.09 Total: -22.91 kcal Atomic # 7 Polarization: -42.69 SS G_CDS: 0.43 Total: -42.26 kcal Atomic # 8 Polarization: -5.54 SS G_CDS: 0.00 Total: -5.54 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.14 -8.59 -39.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089147708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.640 kcal (2) G-P(sol) polarization free energy of solvation -31.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds