Wall clock time and date at job start Mon Mar 30 2020 08:48:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31586 * 1 3 3 Si 1.86791 * 120.00349 * 2 1 4 4 H 1.48502 * 109.47507 * 269.99992 * 3 2 1 5 5 H 1.48501 * 109.47158 * 29.99970 * 3 2 1 6 6 H 1.48505 * 109.47303 * 149.99780 * 3 2 1 7 7 C 1.38623 * 119.99318 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99332 * 179.97438 * 7 2 1 9 9 O 1.34811 * 120.00434 * 0.02562 * 7 2 1 10 10 C 1.35794 * 116.99728 * 185.05363 * 9 7 2 11 11 C 1.38898 * 119.99910 * 354.45705 * 10 9 7 12 12 C 1.38014 * 120.00699 * 179.97438 * 11 10 9 13 13 C 1.38950 * 119.99286 * 359.97438 * 12 11 10 14 14 N 1.39784 * 120.00239 * 179.97438 * 13 12 11 15 15 C 1.46497 * 119.99687 * 180.02562 * 14 13 12 16 16 H 1.08999 * 110.02032 * 34.94336 * 15 14 13 17 17 C 1.53871 * 110.03323 * 273.54324 * 15 14 13 18 18 C 1.54262 * 106.60080 * 240.71567 * 17 15 14 19 19 C 1.54890 * 104.19785 * 23.61309 * 18 17 15 20 20 C 1.54274 * 110.02956 * 156.38150 * 15 14 13 21 21 H 1.09003 * 110.48215 * 214.35632 * 20 15 14 22 22 C 1.52999 * 110.48645 * 336.99307 * 20 15 14 23 23 N 1.46898 * 109.47137 * 185.00343 * 22 20 15 24 24 C 1.38948 * 119.98874 * 0.25879 * 13 12 11 25 25 C 1.38007 * 119.99174 * 359.48183 * 24 13 12 26 26 H 0.96997 * 119.99370 * 0.02562 * 1 2 3 27 27 H 1.08002 * 119.99519 * 359.95877 * 11 10 9 28 28 H 1.07997 * 120.00299 * 179.97438 * 12 11 10 29 29 H 0.97001 * 119.99831 * 0.02562 * 14 13 12 30 30 H 1.08997 * 110.03040 * 0.02562 * 17 15 14 31 31 H 1.09005 * 110.02741 * 121.38573 * 17 15 14 32 32 H 1.09004 * 110.48479 * 142.29411 * 18 17 15 33 33 H 1.08998 * 110.48922 * 264.80104 * 18 17 15 34 34 H 1.08998 * 110.75246 * 80.36593 * 19 18 17 35 35 H 1.08997 * 110.75666 * 203.74275 * 19 18 17 36 36 H 1.08996 * 109.47416 * 305.00188 * 22 20 15 37 37 H 1.08994 * 109.46969 * 65.00423 * 22 20 15 38 38 H 1.00898 * 111.00312 * 180.02562 * 23 22 20 39 39 H 1.00908 * 110.99983 * 303.95541 * 23 22 20 40 40 H 1.07999 * 120.00062 * 179.74591 * 24 13 12 41 41 H 1.08002 * 119.99444 * 180.23679 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2499 1.6176 0.0000 4 1 2.4975 2.0464 -1.4001 5 1 1.4474 2.6526 0.7000 6 1 3.5475 1.4400 0.7001 7 6 2.0088 -1.2006 0.0005 8 1 3.0889 -1.2006 0.0001 9 8 1.3347 -2.3681 0.0005 10 6 2.0702 -3.5045 0.1077 11 6 3.4575 -3.4378 0.0948 12 6 4.2052 -4.5927 0.2042 13 6 3.5699 -5.8223 0.3277 14 7 4.3270 -6.9922 0.4380 15 6 3.6571 -8.2885 0.5677 16 1 2.7370 -8.2932 -0.0167 17 6 3.3437 -8.5743 2.0468 18 6 4.1006 -9.8668 2.4159 19 6 5.2583 -9.9356 1.3891 20 6 4.5937 -9.4174 0.0896 21 1 4.0205 -10.2117 -0.3887 22 6 5.6507 -8.8661 -0.8694 23 7 6.4534 -9.9746 -1.4031 24 6 2.1821 -5.8893 0.3357 25 6 1.4350 -4.7336 0.2316 26 1 -0.4849 0.8401 -0.0004 27 1 3.9512 -2.4820 -0.0010 28 1 5.2838 -4.5407 0.1938 29 1 5.2958 -6.9456 0.4287 30 1 3.6897 -7.7483 2.6681 31 1 2.2714 -8.7177 2.1802 32 1 4.4938 -9.8021 3.4305 33 1 3.4472 -10.7335 2.3156 34 1 6.0796 -9.2847 1.6890 35 1 5.6031 -10.9619 1.2639 36 1 5.1594 -8.3450 -1.6911 37 1 6.2994 -8.1721 -0.3351 38 1 7.1595 -9.6362 -2.0394 39 1 6.8676 -10.5131 -0.6569 40 1 1.6881 -6.8453 0.4275 41 1 0.3563 -4.7853 0.2417 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089147708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:48:40 Heat of formation + Delta-G solvation = -25.407648 kcal Electronic energy + Delta-G solvation = -21014.765666 eV Core-core repulsion = 17893.764229 eV Total energy + Delta-G solvation = -3121.001438 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.94032 -40.02923 -38.14387 -35.18377 -34.64523 -33.89618 -31.82195 -29.99564 -29.30822 -27.92505 -26.75139 -24.69915 -23.54419 -22.58519 -21.39586 -20.41252 -19.48404 -18.87052 -18.17091 -17.12195 -16.51215 -16.26125 -16.03115 -15.78171 -15.57948 -15.35738 -15.08530 -14.89085 -14.32763 -14.04879 -14.02672 -13.76613 -13.48451 -13.43340 -13.06194 -12.79447 -12.41292 -12.32054 -12.11115 -11.94859 -11.91661 -11.66066 -11.47212 -11.42625 -11.08227 -10.89348 -10.15679 -9.76857 -9.58136 -8.39215 -7.90979 -6.02782 0.59378 0.94636 1.36339 1.46305 1.53848 2.22682 2.65830 2.91811 3.25769 3.46347 3.67327 3.70801 3.76546 4.04658 4.14453 4.18321 4.36184 4.44450 4.53860 4.57780 4.58665 4.65472 4.71289 4.79884 4.84563 4.94521 5.04897 5.10818 5.13874 5.22506 5.24830 5.30154 5.35645 5.50414 5.53571 5.57265 5.79389 6.00932 6.11872 6.24358 6.61147 6.66614 7.04017 7.07361 7.94094 8.85498 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.034515 B = 0.003365 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.041942 B = 8318.203446 C = 8698.374948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.029 4.029 3 Si 1.017 2.983 4 H -0.264 1.264 5 H -0.273 1.273 6 H -0.254 1.254 7 C -0.406 4.406 8 H 0.098 0.902 9 O -0.243 6.243 10 C 0.061 3.939 11 C -0.193 4.193 12 C -0.147 4.147 13 C 0.156 3.844 14 N -0.736 5.736 15 C 0.154 3.846 16 H 0.071 0.929 17 C -0.142 4.142 18 C -0.118 4.118 19 C -0.114 4.114 20 C -0.089 4.089 21 H 0.091 0.909 22 C 0.076 3.924 23 N -0.856 5.856 24 C -0.144 4.144 25 C -0.156 4.156 26 H 0.269 0.731 27 H 0.118 0.882 28 H 0.137 0.863 29 H 0.400 0.600 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.064 0.936 35 H 0.082 0.918 36 H 0.058 0.942 37 H 0.031 0.969 38 H 0.348 0.652 39 H 0.347 0.653 40 H 0.140 0.860 41 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.266 -20.535 2.299 25.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.225 4.225 3 Si 0.837 3.163 4 H -0.189 1.189 5 H -0.198 1.198 6 H -0.177 1.177 7 C -0.483 4.483 8 H 0.115 0.885 9 O -0.151 6.151 10 C 0.012 3.988 11 C -0.213 4.213 12 C -0.169 4.169 13 C 0.056 3.944 14 N -0.371 5.371 15 C 0.048 3.952 16 H 0.089 0.911 17 C -0.181 4.181 18 C -0.156 4.156 19 C -0.152 4.152 20 C -0.108 4.108 21 H 0.109 0.891 22 C -0.055 4.055 23 N -0.387 5.387 24 C -0.166 4.166 25 C -0.175 4.175 26 H 0.078 0.922 27 H 0.136 0.864 28 H 0.155 0.845 29 H 0.237 0.763 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.100 0.900 36 H 0.076 0.924 37 H 0.049 0.951 38 H 0.161 0.839 39 H 0.160 0.840 40 H 0.158 0.842 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 13.059 -20.775 1.979 24.618 hybrid contribution 0.931 1.687 0.426 1.973 sum 13.991 -19.089 2.404 23.789 Atomic orbital electron populations 1.70211 1.07966 1.28392 1.50153 1.26533 0.96850 1.02626 0.96489 0.84611 0.77762 0.74840 0.79131 1.18920 1.19755 1.17737 1.21756 0.92326 0.81813 1.52385 0.88480 1.83933 1.35548 1.12317 1.83352 1.19724 0.91486 0.88010 0.99616 1.21040 0.92934 0.99357 1.07926 1.20466 0.99553 0.90258 1.06668 1.17512 0.90666 0.86961 0.99305 1.44542 1.07217 1.01969 1.83353 1.21522 0.95803 0.82410 0.95491 0.91113 1.22725 1.00726 0.98428 0.96256 1.22297 0.97149 0.96991 0.99143 1.22551 0.97447 1.01632 0.93542 1.22202 0.96120 0.96693 0.95782 0.89118 1.21612 0.94839 0.92147 0.96918 1.58707 1.31138 1.25806 1.23010 1.20433 0.92195 0.97095 1.06917 1.20236 0.99550 0.90246 1.07499 0.92162 0.86446 0.84531 0.76284 0.92543 0.91606 0.91409 0.90719 0.91688 0.89982 0.92359 0.95063 0.83930 0.84006 0.84245 0.87088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.82 13.67 21.61 0.30 -58.53 16 2 C -0.03 -1.70 5.49 84.82 0.47 -1.23 16 3 Si 1.02 44.28 29.55 68.60 2.03 46.30 16 4 H -0.26 -10.91 7.11 99.48 0.71 -10.21 16 5 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 6 H -0.25 -10.23 7.11 99.48 0.71 -9.53 16 7 C -0.41 -24.47 9.48 67.91 0.64 -23.83 16 8 H 0.10 5.37 5.20 -2.91 -0.02 5.35 16 9 O -0.24 -15.21 9.76 -23.04 -0.22 -15.43 16 10 C 0.06 3.16 6.65 22.59 0.15 3.31 16 11 C -0.19 -8.65 9.16 22.37 0.20 -8.44 16 12 C -0.15 -5.18 9.89 22.39 0.22 -4.96 16 13 C 0.16 4.98 6.66 38.21 0.25 5.23 16 14 N -0.74 -16.74 4.55 -315.38 -1.44 -18.18 16 15 C 0.15 2.96 2.77 45.72 0.13 3.09 16 16 H 0.07 1.51 6.50 -2.39 -0.02 1.49 16 17 C -0.14 -2.62 6.59 31.32 0.21 -2.41 16 18 C -0.12 -1.60 6.83 31.67 0.22 -1.38 16 19 C -0.11 -1.36 5.69 31.88 0.18 -1.18 16 20 C -0.09 -1.31 3.05 -9.72 -0.03 -1.34 16 21 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 22 C 0.08 1.14 5.30 86.30 0.46 1.60 16 23 N -0.86 -10.83 9.62 -186.73 -1.80 -12.63 16 24 C -0.14 -5.05 9.21 22.39 0.21 -4.84 16 25 C -0.16 -6.89 9.98 22.37 0.22 -6.67 16 26 H 0.27 15.67 8.31 -92.71 -0.77 14.89 16 27 H 0.12 5.36 5.63 -2.91 -0.02 5.34 16 28 H 0.14 3.88 8.06 -2.91 -0.02 3.85 16 29 H 0.40 7.82 6.51 -92.71 -0.60 7.22 16 30 H 0.06 1.25 7.92 -2.39 -0.02 1.23 16 31 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 32 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 33 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.06 0.78 7.97 -2.39 -0.02 0.76 16 35 H 0.08 0.77 8.04 -2.39 -0.02 0.76 16 36 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.03 0.44 6.40 -2.39 -0.02 0.42 16 38 H 0.35 3.68 9.08 -89.70 -0.81 2.87 16 39 H 0.35 3.34 8.28 -89.69 -0.74 2.60 16 40 H 0.14 4.05 6.24 -2.91 -0.02 4.03 16 41 H 0.11 4.88 8.06 -2.91 -0.02 4.86 16 Total: -1.00 -72.17 328.14 1.30 -70.87 By element: Atomic # 1 Polarization: 31.74 SS G_CDS: -1.09 Total: 30.64 kcal Atomic # 6 Polarization: -46.58 SS G_CDS: 3.53 Total: -43.05 kcal Atomic # 7 Polarization: -86.39 SS G_CDS: -2.94 Total: -89.33 kcal Atomic # 8 Polarization: -15.21 SS G_CDS: -0.22 Total: -15.43 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.30 kcal Total: -72.17 1.30 -70.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089147708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.458 kcal (2) G-P(sol) polarization free energy of solvation -72.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds