Wall clock time and date at job start Mon Mar 30 2020 08:48:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30901 * 1 3 3 Si 1.86803 * 119.99648 * 2 1 4 4 H 1.48500 * 109.46934 * 239.99504 * 3 2 1 5 5 H 1.48498 * 109.47139 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47285 * 119.99760 * 3 2 1 7 7 C 1.39879 * 120.00323 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00441 * 195.15860 * 7 2 1 9 9 C 1.41029 * 120.00105 * 15.16194 * 7 2 1 10 10 C 1.40664 * 120.26514 * 25.75324 * 9 7 2 11 11 C 1.38008 * 119.77053 * 180.22869 * 10 9 7 12 12 N 1.39852 * 119.84096 * 179.76892 * 11 10 9 13 13 C 1.46500 * 119.99739 * 179.72419 * 12 11 10 14 14 C 1.52997 * 109.46952 * 180.02562 * 13 12 11 15 15 H 1.09000 * 109.52679 * 55.12509 * 14 13 12 16 16 C 1.53179 * 109.52228 * 175.31635 * 14 13 12 17 17 C 1.53182 * 109.03495 * 176.88338 * 16 14 13 18 18 C 1.53093 * 109.16630 * 303.01870 * 17 16 14 19 19 O 1.42900 * 109.41225 * 57.60637 * 18 17 16 20 20 C 1.42903 * 114.10153 * 298.84579 * 19 18 17 21 21 C 1.39603 * 120.31729 * 359.49994 * 11 10 9 22 22 C 1.38055 * 120.55178 * 0.22517 * 21 11 10 23 23 C 1.38740 * 120.21849 * 0.03132 * 22 21 11 24 24 N 1.38870 * 120.16283 * 179.97438 * 23 22 21 25 25 H 0.96996 * 120.00242 * 0.02562 * 1 2 3 26 26 H 1.07998 * 120.11745 * 359.97438 * 10 9 7 27 27 H 0.96995 * 119.99945 * 359.73059 * 12 11 10 28 28 H 1.08996 * 109.47192 * 60.00597 * 13 12 11 29 29 H 1.09001 * 109.47330 * 300.00709 * 13 12 11 30 30 H 1.08994 * 109.54519 * 296.75356 * 16 14 13 31 31 H 1.09000 * 109.54404 * 57.02094 * 16 14 13 32 32 H 1.09003 * 109.51944 * 183.11243 * 17 16 14 33 33 H 1.08999 * 109.57394 * 62.95836 * 17 16 14 34 34 H 1.09002 * 109.48068 * 297.63050 * 18 17 16 35 35 H 1.08995 * 109.47762 * 177.59223 * 18 17 16 36 36 H 1.09003 * 109.47541 * 301.17099 * 20 19 18 37 37 H 1.09001 * 109.48901 * 181.14791 * 20 19 18 38 38 H 1.08004 * 119.72755 * 180.25228 * 21 11 10 39 39 H 1.08002 * 119.89019 * 180.02562 * 22 21 11 40 40 H 0.97001 * 119.99723 * 359.97438 * 24 23 22 41 41 H 0.97002 * 119.99966 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2429 1.6178 0.0000 4 1 3.0967 1.6964 -1.2125 5 1 1.2779 2.7465 -0.0006 6 1 3.0967 1.6966 1.2125 7 6 2.0085 -1.2113 0.0005 8 1 3.0603 -1.2275 0.2451 9 6 1.3402 -2.4116 -0.3184 10 6 0.1927 -2.3897 -1.1316 11 6 -0.4560 -3.5698 -1.4333 12 7 -1.5998 -3.5492 -2.2377 13 6 -2.2876 -4.8006 -2.5652 14 6 -3.4980 -4.5004 -3.4516 15 1 -3.1765 -3.9410 -4.3301 16 6 -4.1497 -5.8153 -3.8906 17 6 -5.4041 -5.5014 -4.7119 18 6 -6.3493 -4.6355 -3.8748 19 8 -5.6712 -3.4434 -3.4736 20 6 -4.5169 -3.6732 -2.6632 21 6 0.0274 -4.7847 -0.9441 22 6 1.1558 -4.8222 -0.1496 23 6 1.8225 -3.6488 0.1722 24 7 2.9571 -3.6878 0.9719 25 1 -0.4850 0.8400 -0.0004 26 1 -0.1819 -1.4521 -1.5151 27 1 -1.9377 -2.7064 -2.5788 28 1 -2.6206 -5.2834 -1.6464 29 1 -1.6040 -5.4628 -3.0964 30 1 -3.4478 -6.3845 -4.4999 31 1 -4.4260 -6.3968 -3.0110 32 1 -5.9048 -6.4312 -4.9818 33 1 -5.1227 -4.9632 -5.6170 34 1 -6.6631 -5.1903 -2.9906 35 1 -7.2244 -4.3735 -4.4694 36 1 -4.8068 -4.2153 -1.7631 37 1 -4.0720 -2.7179 -2.3847 38 1 -0.4854 -5.7030 -1.1896 39 1 1.5207 -5.7681 0.2228 40 1 3.2851 -4.5369 1.3073 41 1 3.4212 -2.8660 1.1958 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127335021.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:48:03 Heat of formation + Delta-G solvation = -37.450172 kcal Electronic energy + Delta-G solvation = -21141.350377 eV Core-core repulsion = 18019.826737 eV Total energy + Delta-G solvation = -3121.523641 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.51914 -37.87838 -35.75849 -33.78974 -33.43556 -32.26282 -30.46939 -29.38679 -26.98605 -25.13051 -24.94022 -24.49652 -22.10755 -20.98890 -20.03741 -19.60902 -17.06534 -16.46791 -16.22448 -15.80961 -15.44650 -14.96554 -14.93473 -14.71466 -14.42231 -14.17690 -13.38956 -13.04180 -12.81106 -12.68170 -12.36886 -12.03731 -11.81954 -11.69993 -11.32681 -11.27879 -11.16242 -10.99376 -10.97457 -10.68748 -10.39808 -10.29240 -9.85290 -9.74964 -9.44621 -9.31394 -9.03990 -7.75399 -7.20643 -6.59018 -5.52776 -4.05420 2.93765 3.13893 3.16549 3.32794 3.49554 3.84914 4.04668 4.32668 4.68200 4.74068 4.82765 4.87186 4.93294 5.13765 5.32785 5.40015 5.44042 5.57024 5.65240 5.71120 5.74107 5.85473 5.90653 6.02848 6.10249 6.18613 6.35482 6.38382 6.64317 7.13175 7.16406 7.16768 7.33682 7.50184 7.71312 7.89657 8.01620 8.13662 8.47173 8.76422 8.90829 8.95146 9.01671 9.27283 9.35453 10.39374 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.020453 B = 0.004230 C = 0.003597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.694982 B = 6617.777088 C = 7783.250658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.076 3.924 3 Si 0.902 3.098 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.269 1.269 7 C -0.464 4.464 8 H 0.070 0.930 9 C 0.095 3.905 10 C -0.201 4.201 11 C 0.176 3.824 12 N -0.764 5.764 13 C 0.147 3.853 14 C -0.132 4.132 15 H 0.082 0.918 16 C -0.115 4.115 17 C -0.155 4.155 18 C 0.059 3.941 19 O -0.384 6.384 20 C 0.067 3.933 21 C -0.255 4.255 22 C -0.153 4.153 23 C 0.085 3.915 24 N -0.889 5.889 25 H 0.275 0.725 26 H 0.119 0.881 27 H 0.387 0.613 28 H 0.047 0.953 29 H 0.048 0.952 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.048 0.952 35 H 0.089 0.911 36 H 0.051 0.949 37 H 0.099 0.901 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.374 0.626 41 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.243 -7.536 -6.007 12.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.139 4.139 3 Si 0.728 3.272 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.194 1.194 7 C -0.495 4.495 8 H 0.088 0.912 9 C 0.090 3.910 10 C -0.225 4.225 11 C 0.078 3.922 12 N -0.399 5.399 13 C 0.022 3.978 14 C -0.151 4.151 15 H 0.100 0.900 16 C -0.153 4.153 17 C -0.192 4.192 18 C -0.018 4.018 19 O -0.303 6.303 20 C -0.010 4.010 21 C -0.279 4.279 22 C -0.177 4.177 23 C -0.016 4.016 24 N -0.432 5.432 25 H 0.086 0.914 26 H 0.137 0.863 27 H 0.221 0.779 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.066 0.934 35 H 0.108 0.892 36 H 0.070 0.930 37 H 0.117 0.883 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.199 0.801 41 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -8.615 -7.360 -6.094 12.865 hybrid contribution 0.616 0.695 0.231 0.957 sum -7.999 -6.665 -5.863 11.949 Atomic orbital electron populations 1.69860 1.07223 1.28458 1.37224 1.25739 0.94681 1.00646 0.92871 0.86480 0.80094 0.81057 0.79608 1.19175 1.20593 1.19375 1.19107 0.96529 0.91052 1.42844 0.91179 1.16965 0.92669 0.90242 0.91128 1.20534 1.01000 0.95182 1.05821 1.17510 0.87335 0.94155 0.93202 1.44343 1.30343 1.06329 1.58920 1.20936 0.91570 0.88490 0.96840 1.22004 0.95992 0.97264 0.99881 0.89974 1.21563 0.96849 0.96790 1.00070 1.22181 0.97039 1.00397 0.99626 1.22557 0.94685 0.86866 0.97726 1.87944 1.41718 1.30110 1.70501 1.22673 0.85050 1.01135 0.92125 1.19600 1.02355 0.94416 1.11556 1.19697 0.98679 0.94587 1.04787 1.17864 0.91563 0.93923 0.98277 1.41813 1.31812 1.09125 1.60443 0.91390 0.86290 0.77912 0.93530 0.93340 0.91223 0.91608 0.91035 0.91088 0.93365 0.89240 0.93030 0.88294 0.89815 0.89834 0.80130 0.78353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.03 10.88 55.54 0.60 -20.42 16 2 C 0.08 1.94 5.18 -17.33 -0.09 1.85 16 3 Si 0.90 19.06 29.59 -169.99 -5.03 14.03 16 4 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 5 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 6 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 7 C -0.46 -12.26 8.50 -37.91 -0.32 -12.58 16 8 H 0.07 1.76 6.67 -52.48 -0.35 1.41 16 9 C 0.10 2.54 5.58 -106.66 -0.60 1.95 16 10 C -0.20 -5.24 8.50 -38.75 -0.33 -5.57 16 11 C 0.18 4.12 6.64 -83.77 -0.56 3.56 16 12 N -0.76 -14.54 5.49 -58.64 -0.32 -14.87 16 13 C 0.15 2.27 4.30 -4.04 -0.02 2.25 16 14 C -0.13 -1.68 2.43 -90.48 -0.22 -1.90 16 15 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 16 C -0.11 -1.19 5.31 -26.54 -0.14 -1.33 16 17 C -0.15 -1.42 6.14 -26.59 -0.16 -1.58 16 18 C 0.06 0.59 6.84 37.21 0.25 0.84 16 19 O -0.38 -5.16 10.77 -35.23 -0.38 -5.54 16 20 C 0.07 0.89 5.97 37.20 0.22 1.11 16 21 C -0.26 -5.84 9.31 -39.14 -0.36 -6.20 16 22 C -0.15 -3.54 9.86 -39.46 -0.39 -3.93 16 23 C 0.08 2.07 6.79 -83.22 -0.56 1.50 16 24 N -0.89 -18.38 8.98 32.75 0.29 -18.09 16 25 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16 26 H 0.12 3.22 6.15 -52.49 -0.32 2.90 16 27 H 0.39 7.11 7.67 -40.82 -0.31 6.80 16 28 H 0.05 0.74 7.94 -51.93 -0.41 0.33 16 29 H 0.05 0.76 7.94 -51.93 -0.41 0.35 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.10 1.42 7.25 -51.93 -0.38 1.04 16 38 H 0.08 1.74 6.69 -52.48 -0.35 1.38 16 39 H 0.08 1.73 8.06 -52.49 -0.42 1.30 16 40 H 0.37 6.54 8.83 -40.82 -0.36 6.18 16 41 H 0.39 7.87 7.04 -40.82 -0.29 7.58 16 LS Contribution 326.05 15.07 4.91 4.91 Total: -1.00 -28.77 326.05 -9.32 -38.09 By element: Atomic # 1 Polarization: 28.03 SS G_CDS: -6.13 Total: 21.90 kcal Atomic # 6 Polarization: -16.75 SS G_CDS: -3.28 Total: -20.02 kcal Atomic # 7 Polarization: -53.95 SS G_CDS: 0.58 Total: -53.37 kcal Atomic # 8 Polarization: -5.16 SS G_CDS: -0.38 Total: -5.54 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -5.03 Total: 14.03 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -28.77 -9.32 -38.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127335021.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.642 kcal (2) G-P(sol) polarization free energy of solvation -28.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds