Wall clock time and date at job start Mon Mar 30 2020 08:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42900 * 109.47166 * 2 1 4 4 C 1.35861 * 117.00171 * 185.04719 * 3 2 1 5 5 C 1.33154 * 119.99739 * 115.79415 * 4 3 2 6 6 C 1.50703 * 120.00372 * 359.21786 * 5 4 3 7 7 C 1.50698 * 120.00080 * 179.22480 * 5 4 3 8 8 C 1.50699 * 109.47690 * 96.19133 * 7 5 4 9 9 H 1.08002 * 119.99504 * 0.02562 * 8 7 5 10 10 C 1.37878 * 120.00427 * 180.02562 * 8 7 5 11 11 N 1.31520 * 119.99630 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 120.00068 * 180.02562 * 10 8 7 13 13 H 1.48495 * 109.47291 * 89.99895 * 12 10 8 14 14 H 1.48503 * 109.46784 * 209.99546 * 12 10 8 15 15 H 1.48504 * 109.46989 * 329.99545 * 12 10 8 16 16 C 1.48001 * 119.99872 * 295.78973 * 4 3 2 17 17 C 1.39528 * 120.07265 * 123.58202 * 16 4 3 18 18 C 1.37863 * 119.91617 * 180.27155 * 17 16 4 19 19 C 1.38859 * 120.08138 * 0.02562 * 18 17 16 20 20 O 1.35859 * 119.91965 * 179.97438 * 19 18 17 21 21 C 1.42900 * 117.00264 * 0.02562 * 20 19 18 22 22 C 1.38854 * 120.15556 * 359.97438 * 19 18 17 23 23 C 1.37862 * 120.08407 * 0.02562 * 22 19 18 24 24 H 1.08994 * 109.47230 * 300.00069 * 1 2 3 25 25 H 1.09005 * 109.47177 * 60.00204 * 1 2 3 26 26 H 1.09000 * 109.47052 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47230 * 239.99931 * 2 1 3 28 28 H 1.09005 * 109.47177 * 119.99796 * 2 1 3 29 29 H 1.09000 * 109.47076 * 84.96527 * 6 5 4 30 30 H 1.09001 * 109.47282 * 204.96842 * 6 5 4 31 31 H 1.09003 * 109.46906 * 324.97292 * 6 5 4 32 32 H 1.09004 * 109.47244 * 216.19439 * 7 5 4 33 33 H 1.09004 * 109.46882 * 336.19328 * 7 5 4 34 34 H 0.96995 * 119.99631 * 180.02562 * 11 10 8 35 35 H 1.07996 * 120.04103 * 0.25007 * 17 16 4 36 36 H 1.07995 * 119.95705 * 179.97438 * 18 17 16 37 37 H 1.09002 * 109.46855 * 60.00362 * 21 20 19 38 38 H 1.08992 * 109.47248 * 180.02562 * 21 20 19 39 39 H 1.08995 * 109.46843 * 300.00421 * 21 20 19 40 40 H 1.08005 * 119.95936 * 179.97438 * 22 19 18 41 41 H 1.07994 * 120.04110 * 179.97438 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3488 1.5269 -0.1065 5 6 3.8556 2.1425 -1.1729 6 6 2.9416 2.6244 -2.2700 7 6 5.3431 2.3573 -1.2828 8 6 5.9502 1.2541 -2.1106 9 1 5.3217 0.4754 -2.5169 10 6 7.3081 1.2387 -2.3494 11 7 8.0734 2.1872 -1.8550 12 14 8.0605 -0.1285 -3.3760 13 1 8.0649 0.2714 -4.8061 14 1 9.4543 -0.3751 -2.9268 15 1 7.2605 -1.3688 -3.2113 16 6 4.2479 1.0383 0.9628 17 6 5.2813 0.1522 0.6568 18 6 6.1134 -0.3052 1.6563 19 6 5.9237 0.1145 2.9663 20 8 6.7453 -0.3387 3.9488 21 6 7.7818 -1.2431 3.5620 22 6 4.8962 0.9963 3.2744 23 6 4.0602 1.4579 2.2801 24 1 -0.3633 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 2.5549 3.6107 -2.0137 30 1 3.4972 2.6838 -3.2059 31 1 2.1116 1.9271 -2.3838 32 1 5.5372 3.3181 -1.7596 33 1 5.7858 2.3499 -0.2868 34 1 9.0286 2.1766 -2.0233 35 1 5.4289 -0.1752 -0.3617 36 1 6.9132 -0.9914 1.4203 37 1 8.4339 -0.7589 2.8351 38 1 8.3627 -1.5268 4.4395 39 1 7.3391 -2.1338 3.1162 40 1 4.7513 1.3203 4.2945 41 1 3.2611 2.1433 2.5206 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000205942321.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:38:17 Heat of formation + Delta-G solvation = -52.034959 kcal Electronic energy + Delta-G solvation = -21830.492474 eV Core-core repulsion = 18676.043639 eV Total energy + Delta-G solvation = -3154.448836 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.151 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.75059 -38.58049 -36.63577 -34.63036 -32.43032 -30.92576 -30.50681 -29.80017 -27.53786 -27.14285 -25.16634 -23.13484 -22.43047 -22.01731 -21.00985 -18.17898 -17.71191 -16.54095 -16.37269 -15.66710 -15.43574 -15.18062 -14.60962 -14.31956 -14.11566 -13.61566 -13.22577 -12.92808 -12.72098 -12.50840 -12.31794 -12.13549 -12.12647 -11.78694 -11.68538 -11.56651 -11.19483 -11.12976 -10.81955 -10.70492 -10.64331 -10.34961 -10.23090 -9.59036 -9.45237 -9.29234 -8.45637 -8.38294 -7.86560 -7.15017 -6.06793 -4.10261 1.82405 2.00145 2.80697 3.24029 3.31661 3.33846 3.59288 4.17905 4.38188 4.61486 5.20440 5.25712 5.26716 5.34518 5.38758 5.41736 5.43257 5.53952 5.63082 5.66623 5.87457 5.93001 5.98844 6.09134 6.10139 6.20481 6.24074 6.32829 6.37068 6.60888 6.65951 6.85797 7.03079 7.05979 7.20843 7.28598 7.38426 7.60895 7.81067 7.88196 7.91179 8.28768 8.39174 8.94172 9.51241 11.02150 Molecular weight = 276.15amu Principal moments of inertia in cm(-1) A = 0.009905 B = 0.008866 C = 0.005399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2826.101161 B = 3157.390331 C = 5185.049075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.058 3.942 3 O -0.329 6.329 4 C 0.020 3.980 5 C -0.075 4.075 6 C -0.104 4.104 7 C 0.051 3.949 8 C -0.507 4.507 9 H 0.056 0.944 10 C 0.063 3.937 11 N -0.886 5.886 12 Si 0.886 3.114 13 H -0.279 1.279 14 H -0.286 1.286 15 H -0.273 1.273 16 C -0.088 4.088 17 C -0.031 4.031 18 C -0.210 4.210 19 C 0.119 3.881 20 O -0.324 6.324 21 C 0.029 3.971 22 C -0.167 4.167 23 C -0.068 4.068 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.066 0.934 27 H 0.047 0.953 28 H 0.046 0.954 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.053 0.947 32 H 0.025 0.975 33 H 0.035 0.965 34 H 0.262 0.738 35 H 0.150 0.850 36 H 0.122 0.878 37 H 0.057 0.943 38 H 0.093 0.907 39 H 0.052 0.948 40 H 0.122 0.878 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.443 -5.709 6.964 11.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.017 4.017 3 O -0.246 6.246 4 C -0.022 4.022 5 C -0.076 4.076 6 C -0.161 4.161 7 C 0.014 3.986 8 C -0.545 4.545 9 H 0.074 0.926 10 C -0.140 4.140 11 N -0.525 5.525 12 Si 0.714 3.286 13 H -0.205 1.205 14 H -0.212 1.212 15 H -0.198 1.198 16 C -0.089 4.089 17 C -0.049 4.049 18 C -0.229 4.229 19 C 0.074 3.926 20 O -0.238 6.238 21 C -0.067 4.067 22 C -0.186 4.186 23 C -0.086 4.086 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.085 0.915 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.043 0.957 33 H 0.053 0.947 34 H 0.071 0.929 35 H 0.167 0.833 36 H 0.140 0.860 37 H 0.075 0.925 38 H 0.112 0.888 39 H 0.071 0.929 40 H 0.140 0.860 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -7.392 -5.473 7.196 11.678 hybrid contribution 0.946 -1.014 -0.761 1.582 sum -6.446 -6.487 6.435 11.182 Atomic orbital electron populations 1.21729 0.94261 1.01732 1.02754 1.22522 0.94436 0.84444 1.00288 1.86054 1.19888 1.25723 1.92939 1.18646 0.81179 1.07647 0.94751 1.22890 0.98303 0.96151 0.90251 1.20612 0.97887 0.99956 0.97640 1.18344 0.84460 0.97410 0.98369 1.20937 0.92069 1.09360 1.32156 0.92565 1.24968 0.97241 0.95920 0.95828 1.69964 1.05218 1.32744 1.44541 0.86685 0.78627 0.82520 0.80804 1.20543 1.21195 1.19781 1.18993 0.97628 0.99431 0.92804 1.21664 0.90985 0.92271 0.99974 1.21146 1.03490 1.06154 0.92081 1.19091 0.91218 0.95018 0.87268 1.85977 1.42389 1.61021 1.34440 1.22984 0.89443 0.92290 1.01951 1.20143 0.97034 1.01584 0.99852 1.20970 0.97891 0.97981 0.91730 0.92110 0.92068 0.91495 0.93481 0.93599 0.92300 0.91594 0.92802 0.95710 0.94702 0.92866 0.83274 0.85991 0.92465 0.88834 0.92929 0.86049 0.85910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 10.28 37.16 0.38 -1.36 16 2 C 0.06 0.89 6.59 37.16 0.24 1.13 16 3 O -0.33 -6.03 9.07 -19.30 -0.18 -6.20 16 4 C 0.02 0.41 5.48 -37.35 -0.20 0.21 16 5 C -0.08 -1.63 5.28 -101.12 -0.53 -2.16 16 6 C -0.10 -1.96 9.72 36.01 0.35 -1.61 16 7 C 0.05 1.29 4.36 -29.04 -0.13 1.16 16 8 C -0.51 -13.34 6.70 -34.44 -0.23 -13.57 16 9 H 0.06 1.46 7.72 -52.49 -0.40 1.05 16 10 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 11 N -0.89 -25.42 13.29 55.43 0.74 -24.69 16 12 Si 0.89 20.63 29.54 -169.99 -5.02 15.60 16 13 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 14 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 15 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 16 C -0.09 -1.77 4.16 -104.94 -0.44 -2.21 16 17 C -0.03 -0.65 7.81 -39.24 -0.31 -0.95 16 18 C -0.21 -3.98 9.02 -39.49 -0.36 -4.34 16 19 C 0.12 2.14 6.69 -39.12 -0.26 1.88 16 20 O -0.32 -5.29 10.49 -19.30 -0.20 -5.49 16 21 C 0.03 0.36 9.81 101.05 0.99 1.35 16 22 C -0.17 -2.91 9.97 -39.49 -0.39 -3.31 16 23 C -0.07 -1.23 9.78 -39.24 -0.38 -1.61 16 24 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.05 0.70 8.02 -51.93 -0.42 0.28 16 29 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 30 H 0.07 1.25 8.09 -51.93 -0.42 0.83 16 31 H 0.05 0.94 7.61 -51.93 -0.40 0.54 16 32 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.03 0.95 6.14 -51.93 -0.32 0.63 16 34 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 35 H 0.15 3.35 5.79 -52.49 -0.30 3.05 16 36 H 0.12 2.11 6.28 -52.49 -0.33 1.78 16 37 H 0.06 0.74 7.66 -51.93 -0.40 0.35 16 38 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.05 0.60 7.65 -51.93 -0.40 0.20 16 40 H 0.12 1.83 8.06 -52.48 -0.42 1.41 16 41 H 0.12 2.03 8.06 -52.49 -0.42 1.60 16 LS Contribution 341.16 15.07 5.14 5.14 Total: -1.00 -29.42 341.16 -7.21 -36.63 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -6.32 Total: 2.81 kcal Atomic # 6 Polarization: -22.44 SS G_CDS: -1.36 Total: -23.80 kcal Atomic # 7 Polarization: -25.42 SS G_CDS: 0.74 Total: -24.69 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: -0.38 Total: -11.69 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.42 -7.21 -36.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000205942321.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.408 kcal (2) G-P(sol) polarization free energy of solvation -29.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds