Wall clock time and date at job start Mon Mar 30 2020 07:18:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42903 * 114.00104 * 2 1 4 4 C 1.50705 * 109.47133 * 180.02562 * 3 2 1 5 5 C 1.38251 * 119.99901 * 0.18463 * 4 3 2 6 6 C 1.38216 * 119.99872 * 180.23350 * 5 4 3 7 7 C 1.38259 * 119.99855 * 359.81122 * 6 5 4 8 8 C 1.38218 * 120.00292 * 0.02562 * 7 6 5 9 9 C 1.38215 * 119.99631 * 180.02562 * 4 3 2 10 10 C 1.50699 * 120.00218 * 359.97438 * 9 4 3 11 11 H 1.09001 * 110.54906 * 37.61695 * 10 9 4 12 12 C 1.54993 * 110.61997 * 274.73042 * 10 9 4 13 13 C 1.54815 * 102.09024 * 204.31680 * 12 10 9 14 14 C 1.54103 * 104.18943 * 20.88295 * 13 12 10 15 15 C 1.53001 * 109.87802 * 121.59885 * 14 13 12 16 16 C 1.50701 * 109.87827 * 242.60739 * 14 13 12 17 17 H 1.08002 * 119.99761 * 359.97438 * 16 14 13 18 18 C 1.37871 * 119.99694 * 180.27812 * 16 14 13 19 19 N 1.31514 * 120.00482 * 359.71466 * 18 16 14 20 20 Si 1.86801 * 119.99746 * 179.72062 * 18 16 14 21 21 H 1.48504 * 109.47266 * 60.00049 * 20 18 16 22 22 H 1.48504 * 109.46970 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47383 * 299.99456 * 20 18 16 24 24 O 1.43745 * 107.29278 * 2.02694 * 14 13 12 25 25 H 1.09004 * 109.47107 * 300.00251 * 1 2 3 26 26 H 1.09003 * 109.47261 * 59.99639 * 1 2 3 27 27 H 1.09001 * 109.46947 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47051 * 59.99773 * 3 2 1 29 29 H 1.08997 * 109.47260 * 299.99980 * 3 2 1 30 30 H 1.07997 * 120.00570 * 0.02562 * 5 4 3 31 31 H 1.07994 * 120.00167 * 179.79640 * 6 5 4 32 32 H 1.08000 * 120.00331 * 179.97438 * 7 6 5 33 33 H 1.07999 * 120.00320 * 179.97438 * 8 7 6 34 34 H 1.08994 * 110.90506 * 86.12356 * 12 10 9 35 35 H 1.09001 * 110.90739 * 322.51334 * 12 10 9 36 36 H 1.09001 * 110.48744 * 262.20428 * 13 12 10 37 37 H 1.09001 * 110.48177 * 139.55746 * 13 12 10 38 38 H 1.09001 * 109.46862 * 180.30187 * 15 14 13 39 39 H 1.08990 * 109.47255 * 300.30858 * 15 14 13 40 40 H 1.09005 * 109.46761 * 60.31228 * 15 14 13 41 41 H 0.96995 * 120.00207 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.1071 -0.0617 -0.0050 6 6 5.4849 -0.1709 -0.0007 7 6 6.2686 0.9682 0.0040 8 6 5.6742 2.2160 0.0049 9 6 4.2959 2.3252 -0.0002 10 6 3.6478 3.6857 0.0003 11 1 2.7534 3.6832 0.6233 12 6 3.3051 4.1275 -1.4452 13 6 3.2751 5.6699 -1.3143 14 6 4.0968 5.9571 -0.0427 15 6 5.2768 6.8704 -0.3811 16 6 3.2227 6.6127 0.9951 17 1 2.1830 6.8097 0.7790 18 6 3.7517 6.9666 2.2181 19 7 5.0178 6.7270 2.4811 20 14 2.6701 7.7863 3.5016 21 1 1.5412 6.8851 3.8463 22 1 3.4717 8.0632 4.7207 23 1 2.1373 9.0617 2.9587 24 8 4.5774 4.6950 0.4496 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6885 1.8464 0.8900 29 1 1.6886 1.8464 -0.8900 30 1 3.4950 -0.9515 -0.0083 31 1 5.9493 -1.1458 -0.0007 32 1 7.3452 0.8830 0.0078 33 1 6.2863 3.1058 0.0090 34 1 2.3310 3.7440 -1.7485 35 1 4.0806 3.8114 -2.1428 36 1 2.2508 6.0227 -1.1945 37 1 3.7409 6.1355 -2.1829 38 1 5.8562 7.0648 0.5214 39 1 5.9111 6.3849 -1.1226 40 1 4.9035 7.8124 -0.7831 41 1 5.3901 6.9764 3.3414 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385899521.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:31 Heat of formation + Delta-G solvation = -68.471919 kcal Electronic energy + Delta-G solvation = -22099.351048 eV Core-core repulsion = 18944.189453 eV Total energy + Delta-G solvation = -3155.161596 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.151 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.62860 -38.02263 -37.30588 -33.21791 -31.99137 -31.11326 -30.79489 -28.94058 -27.18303 -25.32828 -25.21691 -24.62716 -21.90223 -21.10075 -19.94603 -19.31127 -16.54377 -16.48647 -16.45356 -15.82433 -15.14653 -15.10882 -14.56868 -14.19476 -13.86067 -13.59491 -13.28156 -13.20957 -12.60395 -12.41658 -12.38917 -11.91895 -11.64645 -11.45607 -11.22778 -11.07555 -10.91851 -10.84132 -10.70783 -10.51103 -10.40093 -10.08617 -9.88301 -9.80423 -9.47255 -9.17228 -8.48258 -8.36095 -8.23485 -7.88127 -5.94424 -4.12269 1.67561 1.83799 3.30006 3.35726 3.37188 3.75605 4.12688 4.41296 4.87808 5.06327 5.26204 5.27883 5.30779 5.37053 5.41656 5.50831 5.53551 5.57702 5.60604 5.62635 5.81013 5.82815 6.06817 6.25195 6.29354 6.36524 6.40433 6.54751 6.59644 6.69609 6.75095 6.85237 6.92715 6.96384 7.06895 7.13272 7.23258 7.40407 7.47715 7.78241 8.04800 8.35024 8.58851 8.97089 9.59900 11.06601 Molecular weight = 276.15amu Principal moments of inertia in cm(-1) A = 0.016611 B = 0.005919 C = 0.005264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.251255 B = 4729.341594 C = 5317.745560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.390 6.390 3 C 0.102 3.898 4 C -0.090 4.090 5 C -0.104 4.104 6 C -0.134 4.134 7 C -0.126 4.126 8 C -0.091 4.091 9 C -0.059 4.059 10 C 0.116 3.884 11 H 0.067 0.933 12 C -0.142 4.142 13 C -0.142 4.142 14 C 0.225 3.775 15 C -0.130 4.130 16 C -0.544 4.544 17 H 0.055 0.945 18 C 0.082 3.918 19 N -0.859 5.859 20 Si 0.885 3.115 21 H -0.278 1.278 22 H -0.286 1.286 23 H -0.277 1.277 24 O -0.345 6.345 25 H 0.042 0.958 26 H 0.041 0.959 27 H 0.084 0.916 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.126 0.874 31 H 0.115 0.885 32 H 0.117 0.883 33 H 0.135 0.865 34 H 0.059 0.941 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.054 0.946 38 H 0.091 0.909 39 H 0.014 0.986 40 H 0.038 0.962 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.631 -10.986 -6.203 13.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.309 6.309 3 C 0.026 3.974 4 C -0.090 4.090 5 C -0.122 4.122 6 C -0.152 4.152 7 C -0.144 4.144 8 C -0.109 4.109 9 C -0.060 4.060 10 C 0.057 3.943 11 H 0.084 0.916 12 C -0.180 4.180 13 C -0.180 4.180 14 C 0.188 3.812 15 C -0.188 4.188 16 C -0.582 4.582 17 H 0.073 0.927 18 C -0.123 4.123 19 N -0.495 5.495 20 Si 0.713 3.287 21 H -0.203 1.203 22 H -0.212 1.212 23 H -0.202 1.202 24 O -0.265 6.265 25 H 0.061 0.939 26 H 0.059 0.941 27 H 0.102 0.898 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.144 0.856 31 H 0.133 0.867 32 H 0.135 0.865 33 H 0.153 0.847 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.073 0.927 38 H 0.109 0.891 39 H 0.033 0.967 40 H 0.057 0.943 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.174 -11.145 -5.937 13.021 hybrid contribution -1.038 0.733 0.703 1.452 sum -4.212 -10.412 -5.234 12.392 Atomic orbital electron populations 1.22725 0.81093 1.02499 1.00195 1.87811 1.19529 1.28002 1.95528 1.21317 0.90621 0.84336 1.01093 1.19363 0.93476 0.93325 1.02843 1.20811 0.94375 0.96989 0.99996 1.21055 0.93840 0.98147 1.02137 1.21168 0.99551 0.92695 1.00963 1.21090 0.94365 0.97767 0.97635 1.19703 0.93921 0.93757 0.98571 1.21553 0.92984 0.86388 0.93356 0.91583 1.23056 1.00457 0.97261 0.97217 1.23099 1.01459 0.93674 0.99781 1.19625 0.90928 0.82144 0.88546 1.21780 0.98559 0.97215 1.01205 1.21397 0.96167 1.40932 0.99703 0.92677 1.24976 0.94763 0.94505 0.98056 1.69926 1.12103 1.45002 1.22513 0.86794 0.80744 0.79965 0.81205 1.20312 1.21202 1.20227 1.89031 1.46101 1.15733 1.75616 0.93929 0.94061 0.89765 0.91588 0.91857 0.85588 0.86661 0.86483 0.84731 0.92202 0.91762 0.91750 0.92699 0.89076 0.96702 0.94331 0.93004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 101.05 1.11 1.44 16 2 O -0.39 -5.43 9.18 -35.23 -0.32 -5.75 16 3 C 0.10 1.53 5.15 36.01 0.19 1.72 16 4 C -0.09 -1.51 5.88 -104.62 -0.62 -2.13 16 5 C -0.10 -1.60 9.38 -39.58 -0.37 -1.97 16 6 C -0.13 -1.93 10.05 -39.58 -0.40 -2.33 16 7 C -0.13 -1.95 10.05 -39.58 -0.40 -2.35 16 8 C -0.09 -1.66 9.39 -39.58 -0.37 -2.04 16 9 C -0.06 -1.12 5.14 -104.62 -0.54 -1.65 16 10 C 0.12 2.41 2.93 -26.83 -0.08 2.33 16 11 H 0.07 1.43 7.03 -51.93 -0.36 1.07 16 12 C -0.14 -2.61 6.49 -24.72 -0.16 -2.77 16 13 C -0.14 -2.92 6.26 -25.20 -0.16 -3.08 16 14 C 0.22 5.52 0.75 -91.20 -0.07 5.46 16 15 C -0.13 -3.13 8.44 37.16 0.31 -2.82 16 16 C -0.54 -14.66 8.19 -34.44 -0.28 -14.94 16 17 H 0.06 1.46 7.33 -52.49 -0.38 1.08 16 18 C 0.08 2.26 5.26 -17.82 -0.09 2.16 16 19 N -0.86 -24.44 10.92 55.43 0.61 -23.84 16 20 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 O -0.35 -8.64 8.90 -35.23 -0.31 -8.95 16 25 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.07 1.01 7.56 -51.93 -0.39 0.62 16 29 H 0.06 0.89 7.24 -51.93 -0.38 0.51 16 30 H 0.13 1.79 7.01 -52.49 -0.37 1.42 16 31 H 0.12 1.34 8.06 -52.49 -0.42 0.91 16 32 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 33 H 0.13 2.65 7.27 -52.49 -0.38 2.26 16 34 H 0.06 0.95 7.33 -51.93 -0.38 0.57 16 35 H 0.06 1.14 8.05 -51.93 -0.42 0.72 16 36 H 0.06 1.30 7.39 -51.93 -0.38 0.92 16 37 H 0.05 1.04 7.70 -51.93 -0.40 0.64 16 38 H 0.09 2.43 6.00 -51.93 -0.31 2.12 16 39 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 329.27 15.07 4.96 4.96 Total: -1.00 -29.61 329.27 -8.27 -37.87 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -6.26 Total: 2.65 kcal Atomic # 6 Polarization: -21.06 SS G_CDS: -1.92 Total: -22.98 kcal Atomic # 7 Polarization: -24.44 SS G_CDS: 0.61 Total: -23.84 kcal Atomic # 8 Polarization: -14.06 SS G_CDS: -0.64 Total: -14.70 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.61 -8.27 -37.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385899521.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.599 kcal (2) G-P(sol) polarization free energy of solvation -29.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds