Wall clock time and date at job start Mon Mar 30 2020 08:45:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13608 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 C 1.53007 * 109.47184 * 99.80465 * 3 2 1 5 5 C 1.50694 * 109.47297 * 59.99837 * 4 3 2 6 6 O 1.21284 * 120.00100 * 0.02562 * 5 4 3 7 7 N 1.34770 * 120.00190 * 179.97438 * 5 4 3 8 8 C 1.47586 * 134.49328 * 179.97438 * 7 5 4 9 9 C 1.53950 * 86.11354 * 155.35990 * 8 7 5 10 10 C 1.50706 * 113.73627 * 137.95493 * 9 8 7 11 11 H 1.07995 * 120.00167 * 1.64697 * 10 9 8 12 12 C 1.37879 * 119.99394 * 181.92396 * 10 9 8 13 13 N 1.31514 * 120.00338 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99424 * 180.02562 * 12 10 9 15 15 H 1.48492 * 109.47487 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47233 * 120.00158 * 14 12 10 17 17 H 1.48508 * 109.46883 * 239.99963 * 14 12 10 18 18 C 1.47813 * 134.45830 * 359.86765 * 7 5 4 19 19 C 1.53004 * 109.46992 * 219.80156 * 3 2 1 20 20 C 1.52994 * 109.46878 * 60.00375 * 19 3 2 21 21 C 1.52999 * 109.47697 * 59.99916 * 20 19 3 22 22 C 1.53004 * 109.47025 * 299.99994 * 21 20 19 23 23 C 1.53000 * 109.47475 * 339.80397 * 3 2 1 24 24 H 1.09004 * 109.46755 * 299.99841 * 4 3 2 25 25 H 1.09003 * 109.46748 * 180.02562 * 4 3 2 26 26 H 1.09008 * 113.76654 * 41.06222 * 8 7 5 27 27 H 1.08991 * 113.77014 * 269.66271 * 8 7 5 28 28 H 1.09000 * 113.74485 * 269.15566 * 9 8 7 29 29 H 0.96996 * 119.99730 * 179.97438 * 13 12 10 30 30 H 1.09002 * 113.76703 * 90.37825 * 18 7 5 31 31 H 1.08998 * 113.83277 * 318.91803 * 18 7 5 32 32 H 1.09003 * 109.46831 * 180.02562 * 19 3 2 33 33 H 1.08993 * 109.47254 * 300.00221 * 19 3 2 34 34 H 1.09003 * 109.47091 * 299.99476 * 20 19 3 35 35 H 1.09009 * 109.47352 * 180.02562 * 20 19 3 36 36 H 1.08999 * 109.47447 * 180.02562 * 21 20 19 37 37 H 1.08993 * 109.47081 * 59.99742 * 21 20 19 38 38 H 1.09003 * 109.47115 * 300.00337 * 22 21 20 39 39 H 1.08993 * 109.47254 * 179.97438 * 22 21 20 40 40 H 1.09004 * 109.47204 * 59.99707 * 23 3 2 41 41 H 1.08993 * 109.47419 * 179.97438 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1179 0.2465 -1.4215 5 6 2.6150 1.5797 -1.9120 6 8 1.9178 2.2659 -1.1951 7 7 2.9408 2.0100 -3.1469 8 6 2.6378 3.2214 -3.9336 9 6 3.9365 2.9192 -4.7033 10 6 3.8192 3.1180 -6.1926 11 1 2.8913 3.4694 -6.6190 12 6 4.8947 2.8456 -7.0111 13 7 6.0227 2.4119 -6.4923 14 14 4.7496 3.0926 -8.8570 15 1 3.3872 3.5837 -9.1852 16 1 5.7563 4.0887 -9.3038 17 1 4.9899 1.8011 -9.5496 18 6 3.7470 1.4582 -4.2563 19 6 3.1175 1.1091 0.9234 20 6 2.6076 0.8632 2.3448 21 6 3.1183 -0.4903 2.8429 22 6 2.6088 -1.5988 1.9195 23 6 3.1187 -1.3529 0.4980 24 1 2.7549 -0.5432 -2.0793 25 1 4.2080 0.2466 -1.4215 26 1 2.6756 4.1431 -3.3529 27 1 1.7371 3.1366 -4.5414 28 1 4.8194 3.3972 -4.2790 29 1 6.7792 2.2200 -7.0683 30 1 3.1724 0.8548 -4.9590 31 1 4.6687 0.9746 -3.9328 32 1 4.2075 1.1099 0.9230 33 1 2.7537 2.0734 0.5687 34 1 1.5176 0.8628 2.3448 35 1 2.9702 1.6532 3.0027 36 1 2.7546 -0.6656 3.8554 37 1 4.2082 -0.4898 2.8429 38 1 1.5187 -1.5992 1.9194 39 1 2.9729 -2.5630 2.2740 40 1 2.7557 -2.1426 -0.1599 41 1 4.2086 -1.3526 0.4976 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598024694.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:45:35 Heat of formation + Delta-G solvation = 0.085894 kcal Electronic energy + Delta-G solvation = -21532.051255 eV Core-core repulsion = 18412.155300 eV Total energy + Delta-G solvation = -3119.895955 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.35584 -38.83710 -36.89742 -35.53077 -32.91525 -32.69352 -30.94016 -29.58494 -27.13696 -25.16414 -24.86768 -22.90208 -22.80514 -20.93112 -20.19144 -18.16621 -16.92090 -16.73285 -16.17572 -15.63467 -15.30306 -14.76961 -14.58299 -14.46163 -14.15775 -13.71537 -13.38830 -13.10360 -13.04510 -12.47143 -12.20271 -12.09353 -11.90590 -11.80497 -11.75735 -11.63103 -11.48812 -11.26327 -11.17969 -11.00140 -10.81962 -10.66245 -10.48450 -10.33021 -10.19231 -9.57545 -9.31475 -8.91766 -8.62980 -7.88362 -6.22409 -4.27597 3.00257 3.06129 3.10310 3.20263 3.29564 3.33109 3.49925 3.97311 4.30400 4.52671 4.57593 4.66375 4.89373 4.92688 5.08981 5.11585 5.17905 5.32265 5.37575 5.50560 5.53075 5.62351 5.68188 5.79563 5.90434 5.97228 5.99438 6.03841 6.11107 6.15807 6.24914 6.26261 6.35755 6.45141 6.54721 6.59607 6.76339 7.51075 7.75712 7.84848 8.12605 8.47044 8.68392 8.76112 9.39647 10.87290 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.035950 B = 0.003695 C = 0.003602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.671064 B = 7576.058645 C = 7771.764233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C 0.235 3.765 3 C 0.059 3.941 4 C -0.130 4.130 5 C 0.520 3.480 6 O -0.558 6.558 7 N -0.638 5.638 8 C 0.103 3.897 9 C 0.034 3.966 10 C -0.520 4.520 11 H 0.063 0.937 12 C 0.068 3.932 13 N -0.887 5.887 14 Si 0.894 3.106 15 H -0.272 1.272 16 H -0.283 1.283 17 H -0.283 1.283 18 C 0.103 3.897 19 C -0.121 4.121 20 C -0.122 4.122 21 C -0.120 4.120 22 C -0.123 4.123 23 C -0.108 4.108 24 H 0.097 0.903 25 H 0.111 0.889 26 H 0.061 0.939 27 H 0.073 0.927 28 H 0.064 0.936 29 H 0.263 0.737 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.103 0.897 34 H 0.058 0.942 35 H 0.067 0.933 36 H 0.060 0.940 37 H 0.066 0.934 38 H 0.059 0.941 39 H 0.068 0.932 40 H 0.072 0.928 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.181 -7.845 13.432 15.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.120 5.120 2 C -0.083 4.083 3 C 0.055 3.945 4 C -0.170 4.170 5 C 0.310 3.690 6 O -0.438 6.438 7 N -0.371 5.371 8 C -0.019 4.019 9 C 0.014 3.986 10 C -0.558 4.558 11 H 0.081 0.919 12 C -0.135 4.135 13 N -0.524 5.524 14 Si 0.722 3.278 15 H -0.196 1.196 16 H -0.209 1.209 17 H -0.209 1.209 18 C -0.019 4.019 19 C -0.159 4.159 20 C -0.159 4.159 21 C -0.158 4.158 22 C -0.161 4.161 23 C -0.147 4.147 24 H 0.115 0.885 25 H 0.129 0.871 26 H 0.080 0.920 27 H 0.091 0.909 28 H 0.082 0.918 29 H 0.073 0.927 30 H 0.093 0.907 31 H 0.085 0.915 32 H 0.095 0.905 33 H 0.121 0.879 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.078 0.922 39 H 0.087 0.913 40 H 0.091 0.909 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.775 -7.612 13.933 15.976 hybrid contribution 0.429 -0.040 -1.167 1.244 sum -1.346 -7.652 12.766 14.945 Atomic orbital electron populations 1.81102 1.12869 1.09401 1.08614 1.28625 0.94587 0.92210 0.92834 1.18072 0.82290 0.98136 0.96006 1.21738 1.03635 0.96897 0.94771 1.20119 0.80214 0.87297 0.81418 1.90600 1.39665 1.58027 1.55557 1.50535 1.50746 1.23466 1.12395 1.23487 1.00910 0.86757 0.90714 1.20501 0.92230 0.90483 0.95348 1.21022 0.98725 1.45623 0.90403 0.91859 1.25006 0.95048 0.94419 0.99030 1.69946 1.02651 1.44233 1.35528 0.86499 0.78346 0.77928 0.85053 1.19602 1.20855 1.20897 1.23782 0.92457 1.01695 0.83934 1.21931 1.00986 0.99564 0.93449 1.21570 1.00853 0.97107 0.96392 1.21570 1.00938 0.94696 0.98546 1.21581 1.00920 0.98868 0.94686 1.21665 1.01917 0.94264 0.96852 0.88478 0.87070 0.92038 0.90916 0.91762 0.92689 0.90671 0.91546 0.90451 0.87854 0.92320 0.91471 0.92132 0.91490 0.92190 0.91319 0.90948 0.89499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -8.11 18.54 42.16 0.78 -7.33 16 2 C 0.24 3.69 9.56 -20.76 -0.20 3.49 16 3 C 0.06 0.71 0.49 -157.29 -0.08 0.64 16 4 C -0.13 -1.68 4.49 -27.88 -0.13 -1.81 16 5 C 0.52 9.33 7.48 -10.99 -0.08 9.24 16 6 O -0.56 -11.44 13.22 5.55 0.07 -11.37 16 7 N -0.64 -12.28 3.61 -178.21 -0.64 -12.92 16 8 C 0.10 2.10 8.39 -2.96 -0.02 2.07 16 9 C 0.03 0.75 3.60 -90.84 -0.33 0.43 16 10 C -0.52 -12.90 8.77 -34.44 -0.30 -13.20 16 11 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 12 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 13 N -0.89 -23.25 13.29 55.43 0.74 -22.52 16 14 Si 0.89 19.68 29.54 -169.99 -5.02 14.66 16 15 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 16 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 17 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 18 C 0.10 2.04 8.18 -2.83 -0.02 2.02 16 19 C -0.12 -1.44 4.42 -26.73 -0.12 -1.56 16 20 C -0.12 -1.28 5.70 -26.73 -0.15 -1.43 16 21 C -0.12 -1.01 5.92 -26.73 -0.16 -1.16 16 22 C -0.12 -1.06 5.70 -26.73 -0.15 -1.21 16 23 C -0.11 -0.95 4.71 -26.73 -0.13 -1.08 16 24 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 25 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 26 H 0.06 1.22 8.14 -51.92 -0.42 0.80 16 27 H 0.07 1.46 8.09 -51.93 -0.42 1.04 16 28 H 0.06 1.56 8.14 -51.93 -0.42 1.14 16 29 H 0.26 6.59 8.31 -40.82 -0.34 6.25 16 30 H 0.08 1.49 8.09 -51.93 -0.42 1.07 16 31 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.10 1.57 5.51 -51.93 -0.29 1.29 16 34 H 0.06 0.73 7.23 -51.93 -0.38 0.36 16 35 H 0.07 0.64 8.14 -51.92 -0.42 0.22 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.62 7.23 -51.93 -0.38 0.25 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 332.36 15.07 5.01 5.01 Total: -1.00 -29.34 332.36 -7.52 -36.86 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -6.50 Total: -0.45 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: -1.96 Total: -1.94 kcal Atomic # 7 Polarization: -43.65 SS G_CDS: 0.87 Total: -42.77 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: 0.07 Total: -11.37 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -5.02 Total: 14.66 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.34 -7.52 -36.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598024694.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.948 kcal (2) G-P(sol) polarization free energy of solvation -29.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds