Wall clock time and date at job start Mon Mar 30 2020 07:30:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47090 * 2 1 4 4 C 1.53004 * 109.47195 * 120.00128 * 2 1 3 5 5 C 1.52999 * 109.46642 * 180.02562 * 4 2 1 6 6 C 1.52999 * 109.47206 * 59.99943 * 4 2 1 7 7 C 1.50696 * 109.46876 * 179.97438 * 6 4 2 8 8 C 1.38639 * 119.74657 * 90.00259 * 7 6 4 9 9 C 1.37622 * 120.24860 * 180.22798 * 8 7 6 10 10 C 1.40715 * 119.74171 * 359.52374 * 9 8 7 11 11 C 1.41399 * 120.24183 * 180.22515 * 10 9 8 12 12 H 1.07996 * 120.00044 * 204.52621 * 11 10 9 13 13 C 1.39950 * 119.99773 * 24.53568 * 11 10 9 14 14 N 1.30821 * 119.99991 * 17.71280 * 13 11 10 15 15 Si 1.86800 * 119.99756 * 197.70913 * 13 11 10 16 16 H 1.48502 * 109.46794 * 89.99841 * 15 13 11 17 17 H 1.48499 * 109.47177 * 209.99507 * 15 13 11 18 18 H 1.48492 * 109.47228 * 330.00168 * 15 13 11 19 19 C 1.40715 * 119.51175 * 0.47555 * 10 9 8 20 20 C 1.37615 * 119.74353 * 359.75047 * 19 10 9 21 21 C 1.50696 * 109.47066 * 299.99806 * 4 2 1 22 22 O 1.20827 * 120.00115 * 240.00298 * 21 4 2 23 23 O 1.34230 * 119.99961 * 59.99969 * 21 4 2 24 24 H 1.08994 * 109.47440 * 60.00135 * 1 2 3 25 25 H 1.09007 * 109.46915 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47033 * 299.99983 * 1 2 3 27 27 H 1.09001 * 109.47033 * 240.00017 * 2 1 3 28 28 H 1.08996 * 109.47243 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.46775 * 300.00671 * 3 2 1 30 30 H 1.09001 * 109.47169 * 60.00100 * 3 2 1 31 31 H 1.09001 * 109.47059 * 299.99566 * 5 4 2 32 32 H 1.08996 * 109.47397 * 60.00174 * 5 4 2 33 33 H 1.09009 * 109.46858 * 180.02562 * 5 4 2 34 34 H 1.08997 * 109.46707 * 60.00068 * 6 4 2 35 35 H 1.08996 * 109.47243 * 299.99985 * 6 4 2 36 36 H 1.08000 * 119.87572 * 359.95464 * 8 7 6 37 37 H 1.08002 * 120.12750 * 179.72105 * 9 8 7 38 38 H 0.97005 * 119.99803 * 180.02562 * 14 13 11 39 39 H 1.08000 * 120.12426 * 179.73134 * 19 10 9 40 40 H 1.08002 * 119.87199 * 180.02562 * 20 19 10 41 41 H 0.96699 * 117.00070 * 179.97438 * 23 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2493 5 6 3.5701 -0.7207 1.2494 6 6 1.5301 -2.1638 1.2493 7 6 2.0330 -2.8743 2.4794 8 6 1.2800 -2.8513 3.6432 9 6 1.7316 -3.4927 4.7739 10 6 2.9579 -4.1821 4.7427 11 6 3.4297 -4.8488 5.8970 12 1 4.4871 -5.0290 6.0221 13 6 2.5263 -5.2753 6.8770 14 7 1.2537 -5.3797 6.5926 15 14 3.1377 -5.6956 8.5914 16 1 3.1024 -4.4786 9.4416 17 1 2.2655 -6.7402 9.1857 18 1 4.5313 -6.2019 8.5096 19 6 3.7137 -4.1987 3.5559 20 6 3.2447 -3.5464 2.4386 21 6 1.5378 -0.0109 2.4797 22 8 2.3230 0.4483 3.2750 23 8 0.2181 0.1118 2.6921 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 3.9337 -1.2343 0.3594 32 1 3.9330 0.3071 1.2497 33 1 3.9335 -1.2349 2.1392 34 1 1.8934 -2.6775 0.3593 35 1 0.4401 -2.1638 1.2493 36 1 0.3375 -2.3243 3.6638 37 1 1.1455 -3.4698 5.6808 38 1 0.6274 -5.6749 7.2720 39 1 4.6584 -4.7211 3.5221 40 1 3.8230 -3.5581 1.5265 41 1 -0.0561 0.5751 3.4954 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691659521.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:30:29 Heat of formation + Delta-G solvation = -98.618663 kcal Electronic energy + Delta-G solvation = -22220.473260 eV Core-core repulsion = 19064.004403 eV Total energy + Delta-G solvation = -3156.468857 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.151 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.60051 -37.80707 -36.67055 -35.75781 -33.89937 -31.87295 -29.76006 -29.09795 -28.01003 -26.23824 -24.85395 -23.46963 -21.90591 -20.92865 -19.86683 -19.10424 -17.50580 -17.27757 -15.92652 -15.66402 -15.19859 -14.60766 -14.24605 -14.08105 -13.75325 -13.58973 -13.17034 -13.03220 -12.53340 -12.31202 -12.01539 -11.94562 -11.82024 -11.58313 -11.53284 -11.43380 -11.13176 -11.03262 -10.93067 -10.75905 -10.58939 -10.57124 -10.19295 -10.07449 -9.89129 -9.49927 -9.34616 -9.10501 -7.43297 -7.26162 -6.74964 -4.33147 2.69519 2.78012 3.07317 3.09912 3.11418 3.20149 3.43151 3.94174 4.57539 4.78780 4.87810 5.03148 5.25563 5.52818 5.56653 5.65940 5.69881 5.77249 5.90069 5.96239 5.98539 6.01096 6.12912 6.14020 6.22242 6.31463 6.40281 6.41562 6.53490 6.58992 6.70501 6.91666 6.97003 7.09037 7.30127 7.38882 7.63006 7.88015 8.07327 8.12724 8.31587 8.34419 8.65939 8.91300 8.99584 10.19585 Molecular weight = 276.15amu Principal moments of inertia in cm(-1) A = 0.031374 B = 0.004686 C = 0.004543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.232006 B = 5973.620379 C = 6162.317626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.086 4.086 3 C -0.153 4.153 4 C -0.038 4.038 5 C -0.136 4.136 6 C -0.045 4.045 7 C -0.221 4.221 8 C -0.096 4.096 9 C -0.163 4.163 10 C 0.112 3.888 11 C -0.463 4.463 12 H 0.077 0.923 13 C 0.076 3.924 14 N -0.794 5.794 15 Si 0.907 3.093 16 H -0.268 1.268 17 H -0.278 1.278 18 H -0.262 1.262 19 C -0.227 4.227 20 C -0.080 4.080 21 C 0.501 3.499 22 O -0.514 6.514 23 O -0.513 6.513 24 H 0.048 0.952 25 H 0.061 0.939 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.061 0.939 29 H 0.056 0.944 30 H 0.049 0.951 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.079 0.921 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.085 0.915 37 H 0.116 0.884 38 H 0.280 0.720 39 H 0.091 0.909 40 H 0.087 0.913 41 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.365 8.922 -9.728 13.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.104 4.104 3 C -0.210 4.210 4 C -0.039 4.039 5 C -0.193 4.193 6 C -0.082 4.082 7 C -0.222 4.222 8 C -0.114 4.114 9 C -0.182 4.182 10 C 0.109 3.891 11 C -0.493 4.493 12 H 0.095 0.905 13 C -0.141 4.141 14 N -0.419 5.419 15 Si 0.732 3.268 16 H -0.193 1.193 17 H -0.203 1.203 18 H -0.186 1.186 19 C -0.246 4.246 20 C -0.099 4.099 21 C 0.344 3.656 22 O -0.402 6.402 23 O -0.324 6.324 24 H 0.067 0.933 25 H 0.080 0.920 26 H 0.097 0.903 27 H 0.100 0.900 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.098 0.902 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.104 0.896 37 H 0.134 0.866 38 H 0.091 0.909 39 H 0.109 0.891 40 H 0.105 0.895 41 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -2.241 8.754 -9.761 13.301 hybrid contribution 0.009 -0.018 1.437 1.437 sum -2.232 8.736 -8.324 12.272 Atomic orbital electron populations 1.22169 0.94362 1.02829 1.02428 1.21183 0.96752 0.95815 0.96696 1.21968 1.01585 0.95937 1.01523 1.20702 0.97241 0.96447 0.89523 1.21865 0.91825 1.02121 1.03470 1.20377 1.00139 0.90330 0.97390 1.18948 0.98486 1.09725 0.95041 1.20544 0.97573 0.99691 0.93600 1.21286 0.99027 1.00334 0.97557 1.17622 0.91223 0.88768 0.91465 1.19613 0.94784 1.32691 1.02181 0.90484 1.25905 0.94465 0.93271 1.00494 1.69831 1.03442 1.33874 1.34760 0.86330 0.79918 0.78817 0.81765 1.19285 1.20322 1.18610 1.20963 1.02042 1.07876 0.93765 1.20347 0.95024 0.97774 0.96717 1.23239 0.79544 0.75683 0.87137 1.90675 1.56878 1.46106 1.46497 1.84634 1.26908 1.73609 1.47270 0.93274 0.91983 0.90304 0.89990 0.92007 0.92460 0.93176 0.91950 0.92498 0.90175 0.91531 0.91217 0.89637 0.86650 0.90934 0.89121 0.89494 0.74499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.81 8.32 37.16 0.31 -1.50 16 2 C -0.09 -1.02 2.28 -90.62 -0.21 -1.23 16 3 C -0.15 -1.69 8.59 37.16 0.32 -1.37 16 4 C -0.04 -0.57 0.33 -155.66 -0.05 -0.62 16 5 C -0.14 -2.10 6.81 37.16 0.25 -1.85 16 6 C -0.05 -0.75 4.04 -27.89 -0.11 -0.86 16 7 C -0.22 -4.69 4.22 -104.33 -0.44 -5.13 16 8 C -0.10 -2.24 8.66 -39.66 -0.34 -2.59 16 9 C -0.16 -4.32 8.70 -38.87 -0.34 -4.65 16 10 C 0.11 3.03 5.57 -106.82 -0.60 2.44 16 11 C -0.46 -12.56 9.06 -37.74 -0.34 -12.90 16 12 H 0.08 2.02 7.91 -52.49 -0.41 1.60 16 13 C 0.08 1.95 5.14 -17.34 -0.09 1.86 16 14 N -0.79 -20.82 10.95 55.55 0.61 -20.21 16 15 Si 0.91 19.03 29.59 -169.99 -5.03 14.00 16 16 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 17 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 18 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 19 C -0.23 -5.63 9.80 -38.87 -0.38 -6.01 16 20 C -0.08 -1.77 7.84 -39.67 -0.31 -2.08 16 21 C 0.50 8.46 4.05 36.00 0.15 8.60 16 22 O -0.51 -10.45 16.74 -18.75 -0.31 -10.76 16 23 O -0.51 -7.16 9.85 -39.26 -0.39 -7.55 16 24 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 25 H 0.06 0.71 6.43 -51.92 -0.33 0.38 16 26 H 0.08 0.94 5.32 -51.93 -0.28 0.66 16 27 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.06 0.68 6.43 -51.93 -0.33 0.34 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.05 0.61 7.22 -51.93 -0.37 0.23 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.06 0.83 6.39 -51.93 -0.33 0.50 16 33 H 0.08 1.50 6.13 -51.92 -0.32 1.19 16 34 H 0.07 1.00 8.08 -51.93 -0.42 0.58 16 35 H 0.07 1.12 6.34 -51.93 -0.33 0.79 16 36 H 0.09 1.85 7.62 -52.49 -0.40 1.45 16 37 H 0.12 3.18 6.16 -52.49 -0.32 2.86 16 38 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16 39 H 0.09 2.13 8.06 -52.49 -0.42 1.71 16 40 H 0.09 1.66 8.02 -52.49 -0.42 1.24 16 41 H 0.40 4.16 9.10 45.56 0.41 4.58 16 LS Contribution 321.93 15.07 4.85 4.85 Total: -1.00 -30.03 321.93 -7.57 -37.59 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -5.11 Total: 9.96 kcal Atomic # 6 Polarization: -25.70 SS G_CDS: -2.18 Total: -27.88 kcal Atomic # 7 Polarization: -20.82 SS G_CDS: 0.61 Total: -20.21 kcal Atomic # 8 Polarization: -17.61 SS G_CDS: -0.70 Total: -18.31 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -5.03 Total: 14.00 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.03 -7.57 -37.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691659521.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.024 kcal (2) G-P(sol) polarization free energy of solvation -30.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds