Wall clock time and date at job start Mon Mar 30 2020 07:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52992 * 109.47471 * 2 1 4 4 C 1.50694 * 109.47340 * 180.02562 * 3 2 1 5 5 O 1.20826 * 120.00035 * 0.02562 * 4 3 2 6 6 O 1.34234 * 120.00526 * 180.02562 * 4 3 2 7 7 C 1.50706 * 109.46993 * 300.00197 * 3 2 1 8 8 C 1.38234 * 120.00132 * 112.48852 * 7 3 2 9 9 C 1.38230 * 119.99925 * 179.79033 * 8 7 3 10 10 C 1.38239 * 120.00135 * 0.43308 * 9 8 7 11 11 C 1.38240 * 119.99487 * 359.81551 * 10 9 8 12 12 C 1.38226 * 120.00346 * 359.97438 * 11 10 9 13 13 C 1.53004 * 109.47001 * 59.99888 * 3 2 1 14 14 H 1.08994 * 109.47007 * 293.89946 * 13 3 2 15 15 C 1.52999 * 109.47115 * 173.90182 * 13 3 2 16 16 C 1.52996 * 109.47359 * 53.90301 * 13 3 2 17 17 C 1.50693 * 109.47446 * 185.00134 * 16 13 3 18 18 H 1.08000 * 119.99649 * 359.97438 * 17 16 13 19 19 C 1.37880 * 119.99991 * 179.72184 * 17 16 13 20 20 N 1.31510 * 119.99984 * 0.27637 * 19 17 16 21 21 Si 1.86802 * 119.99650 * 180.27349 * 19 17 16 22 22 H 1.48499 * 109.47298 * 60.00227 * 21 19 17 23 23 H 1.48505 * 109.46645 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47327 * 299.99702 * 21 19 17 25 25 H 1.09002 * 109.46873 * 299.99951 * 1 2 3 26 26 H 1.09000 * 109.46482 * 59.99943 * 1 2 3 27 27 H 1.09001 * 109.47337 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47140 * 239.99600 * 2 1 3 29 29 H 1.09002 * 109.47034 * 120.00569 * 2 1 3 30 30 H 0.96696 * 117.00484 * 179.97438 * 6 4 3 31 31 H 1.08002 * 119.99873 * 359.97438 * 8 7 3 32 32 H 1.07999 * 120.00191 * 180.27428 * 9 8 7 33 33 H 1.07997 * 120.00088 * 179.83815 * 10 9 8 34 34 H 1.08002 * 119.99233 * 179.97438 * 11 10 9 35 35 H 1.07999 * 120.00373 * 179.97438 * 12 11 10 36 36 H 1.08996 * 109.47182 * 170.48605 * 15 13 3 37 37 H 1.09005 * 109.46944 * 290.48698 * 15 13 3 38 38 H 1.08999 * 109.47294 * 50.48243 * 15 13 3 39 39 H 1.09002 * 109.47231 * 64.99189 * 16 13 3 40 40 H 1.09005 * 109.46842 * 305.00301 * 16 13 3 41 41 H 0.96998 * 119.99715 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5470 1.4424 -0.0006 5 8 4.1511 0.3960 -0.0015 6 8 4.2183 2.6048 -0.0002 7 6 1.5377 2.1528 -1.2305 8 6 0.6201 3.1796 -1.1096 9 6 0.1626 3.8341 -2.2379 10 6 0.6160 3.4559 -3.4879 11 6 1.5297 2.4257 -3.6091 12 6 1.9905 1.7741 -2.4805 13 6 1.5301 2.1637 1.2493 14 1 0.4456 2.2593 1.1963 15 6 2.1614 3.5551 1.3283 16 6 1.9110 1.3594 2.4938 17 6 1.3044 2.0038 3.7135 18 1 0.7072 2.8978 3.6112 19 6 1.5074 1.4490 4.9593 20 7 2.2350 0.3606 5.0838 21 14 0.7490 2.2435 6.4703 22 1 -0.7287 2.2707 6.3263 23 1 1.1148 1.4600 7.6777 24 1 1.2586 3.6315 6.6083 25 1 -0.3633 0.5138 0.8900 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 5.1840 2.5541 -0.0003 31 1 0.2629 3.4724 -0.1333 32 1 -0.5509 4.6392 -2.1432 33 1 0.2566 3.9655 -4.3696 34 1 1.8836 2.1300 -4.5857 35 1 2.7040 0.9690 -2.5752 36 1 1.6758 4.1302 2.1166 37 1 3.2244 3.4597 1.5503 38 1 2.0341 4.0666 0.3742 39 1 2.9961 1.3391 2.5952 40 1 1.5362 0.3405 2.3967 41 1 2.3782 -0.0294 5.9603 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695786074.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:34 Heat of formation + Delta-G solvation = -80.498033 kcal Electronic energy + Delta-G solvation = -22700.683647 eV Core-core repulsion = 19545.000559 eV Total energy + Delta-G solvation = -3155.683087 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.151 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.92333 -38.86809 -36.60476 -35.73093 -33.15723 -31.71722 -30.64812 -30.53037 -27.35459 -26.68642 -23.58469 -22.82137 -22.43719 -22.01294 -20.50289 -18.39119 -17.54328 -17.31313 -16.27961 -15.79629 -15.24878 -14.78332 -14.58722 -14.39674 -14.10960 -13.93700 -13.48435 -13.00379 -12.79258 -12.38042 -12.15630 -12.11417 -11.69266 -11.55412 -11.34987 -11.19840 -10.96600 -10.93606 -10.87484 -10.64141 -10.56741 -10.35892 -10.10333 -10.00053 -9.60826 -9.17839 -8.98858 -8.76718 -8.52450 -8.33165 -5.98951 -4.01325 1.44558 1.51987 2.68988 3.32906 3.38077 3.39590 3.45270 3.92785 4.45141 4.80480 4.97926 5.07834 5.19885 5.24491 5.36758 5.36884 5.58238 5.63068 5.68943 5.83040 5.93000 6.02455 6.09280 6.15830 6.17383 6.32404 6.39971 6.43130 6.54689 6.60999 6.69358 6.70887 6.82226 6.85510 6.93250 7.05499 7.11854 7.17758 7.65025 7.76371 7.98516 8.34703 8.40526 9.04168 9.62169 11.12137 Molecular weight = 276.15amu Principal moments of inertia in cm(-1) A = 0.021976 B = 0.005851 C = 0.005473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.813590 B = 4784.359102 C = 5115.083244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.101 4.101 3 C -0.005 4.005 4 C 0.502 3.498 5 O -0.519 6.519 6 O -0.504 6.504 7 C -0.054 4.054 8 C -0.103 4.103 9 C -0.122 4.122 10 C -0.127 4.127 11 C -0.121 4.121 12 C -0.119 4.119 13 C -0.078 4.078 14 H 0.079 0.921 15 C -0.144 4.144 16 C 0.024 3.976 17 C -0.516 4.516 18 H 0.056 0.944 19 C 0.058 3.942 20 N -0.893 5.893 21 Si 0.889 3.111 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.277 1.277 25 H 0.070 0.930 26 H 0.050 0.950 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.089 0.911 30 H 0.397 0.603 31 H 0.138 0.862 32 H 0.120 0.880 33 H 0.117 0.883 34 H 0.118 0.882 35 H 0.115 0.885 36 H 0.057 0.943 37 H 0.063 0.937 38 H 0.044 0.956 39 H 0.012 0.988 40 H 0.027 0.973 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.886 5.040 -15.442 16.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.138 4.138 3 C -0.006 4.006 4 C 0.345 3.655 5 O -0.407 6.407 6 O -0.314 6.314 7 C -0.055 4.055 8 C -0.121 4.121 9 C -0.140 4.140 10 C -0.145 4.145 11 C -0.139 4.139 12 C -0.137 4.137 13 C -0.096 4.096 14 H 0.097 0.903 15 C -0.201 4.201 16 C -0.012 4.012 17 C -0.554 4.554 18 H 0.074 0.926 19 C -0.143 4.143 20 N -0.532 5.532 21 Si 0.717 3.283 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.203 1.203 25 H 0.089 0.911 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.108 0.892 30 H 0.254 0.746 31 H 0.155 0.845 32 H 0.138 0.862 33 H 0.135 0.865 34 H 0.136 0.864 35 H 0.133 0.867 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.063 0.937 39 H 0.030 0.970 40 H 0.045 0.955 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.083 4.642 -15.307 16.130 hybrid contribution 0.402 0.291 0.925 1.050 sum -1.680 4.933 -14.382 15.297 Atomic orbital electron populations 1.21810 0.94928 1.01630 1.02368 1.21503 0.96380 0.92436 1.03493 1.19743 0.86567 0.98362 0.95977 1.23204 0.91187 0.80726 0.70389 1.90669 1.70425 1.33419 1.46153 1.84750 1.25560 1.35822 1.85316 1.19536 0.96867 0.95963 0.93097 1.21387 0.96399 0.94836 0.99483 1.21148 1.00253 1.00060 0.92535 1.21091 0.98183 0.97814 0.97394 1.21012 0.98121 0.96752 0.98062 1.21010 1.00422 0.99958 0.92271 1.21420 0.99973 0.95660 0.92576 0.90299 1.22070 1.01804 0.96014 1.00185 1.19287 0.96661 0.95214 0.90068 1.21121 1.31830 1.10965 0.91482 0.92567 1.25001 0.95336 0.94971 0.99009 1.69960 1.39039 1.20431 1.23797 0.86708 0.79684 0.79373 0.82523 1.20261 1.21383 1.20308 0.91118 0.93131 0.92761 0.92207 0.89234 0.74566 0.84462 0.86152 0.86514 0.86445 0.86655 0.92366 0.91838 0.93669 0.96971 0.95497 0.92964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 9.31 37.16 0.35 -2.00 16 2 C -0.10 -1.77 3.65 -26.73 -0.10 -1.86 16 3 C -0.01 -0.09 0.18 -156.81 -0.03 -0.12 16 4 C 0.50 9.22 5.23 36.00 0.19 9.41 16 5 O -0.52 -10.76 16.74 -18.75 -0.31 -11.07 16 6 O -0.50 -7.87 10.25 -39.27 -0.40 -8.27 16 7 C -0.05 -0.82 3.08 -104.62 -0.32 -1.14 16 8 C -0.10 -1.45 7.35 -39.59 -0.29 -1.74 16 9 C -0.12 -1.46 10.05 -39.58 -0.40 -1.85 16 10 C -0.13 -1.42 10.05 -39.58 -0.40 -1.81 16 11 C -0.12 -1.44 10.05 -39.59 -0.40 -1.83 16 12 C -0.12 -1.64 8.84 -39.59 -0.35 -1.99 16 13 C -0.08 -1.51 0.67 -90.62 -0.06 -1.57 16 14 H 0.08 1.49 5.37 -51.93 -0.28 1.21 16 15 C -0.14 -2.65 6.94 37.16 0.26 -2.39 16 16 C 0.02 0.61 3.83 -27.89 -0.11 0.50 16 17 C -0.52 -13.95 8.52 -34.44 -0.29 -14.24 16 18 H 0.06 1.46 7.08 -52.49 -0.37 1.09 16 19 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 20 N -0.89 -26.63 13.29 55.43 0.74 -25.89 16 21 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 H 0.07 1.20 6.57 -51.93 -0.34 0.86 16 26 H 0.05 0.72 7.17 -51.93 -0.37 0.35 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.06 0.98 7.82 -51.93 -0.41 0.57 16 29 H 0.09 1.82 6.18 -51.93 -0.32 1.50 16 30 H 0.40 4.46 9.10 45.56 0.41 4.87 16 31 H 0.14 1.96 5.09 -52.49 -0.27 1.69 16 32 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 33 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 34 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 35 H 0.12 1.59 7.81 -52.49 -0.41 1.18 16 36 H 0.06 1.10 7.26 -51.93 -0.38 0.73 16 37 H 0.06 1.23 5.99 -51.93 -0.31 0.92 16 38 H 0.04 0.73 5.55 -51.93 -0.29 0.44 16 39 H 0.01 0.33 7.56 -51.93 -0.39 -0.06 16 40 H 0.03 0.71 6.03 -51.93 -0.31 0.39 16 41 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 319.52 15.07 4.82 4.82 Total: -1.00 -31.72 319.52 -7.09 -38.81 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -4.86 Total: 6.40 kcal Atomic # 6 Polarization: -19.07 SS G_CDS: -2.05 Total: -21.12 kcal Atomic # 7 Polarization: -26.63 SS G_CDS: 0.74 Total: -25.89 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: -0.72 Total: -19.34 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.72 -7.09 -38.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695786074.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.686 kcal (2) G-P(sol) polarization free energy of solvation -31.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds