Wall clock time and date at job start Mon Mar 30 2020 07:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.47042 * 2 1 4 4 C 1.50698 * 109.46872 * 175.52914 * 3 2 1 5 5 O 1.20827 * 120.00024 * 359.97438 * 4 3 2 6 6 O 1.34231 * 119.99807 * 179.72604 * 4 3 2 7 7 C 1.50690 * 109.47372 * 55.52588 * 3 2 1 8 8 C 1.38240 * 120.00164 * 247.16289 * 7 3 2 9 9 C 1.38238 * 120.00004 * 179.76613 * 8 7 3 10 10 C 1.38231 * 120.00005 * 0.50490 * 9 8 7 11 11 C 1.38233 * 120.00034 * 359.74908 * 10 9 8 12 12 C 1.38236 * 120.00294 * 359.97438 * 11 10 9 13 13 C 1.52999 * 109.46694 * 295.52497 * 3 2 1 14 14 H 1.09002 * 109.47418 * 66.11305 * 13 3 2 15 15 C 1.53004 * 109.47384 * 306.10906 * 13 3 2 16 16 C 1.53008 * 109.47007 * 186.11310 * 13 3 2 17 17 C 1.50695 * 109.47124 * 186.67523 * 16 13 3 18 18 H 1.08004 * 120.00236 * 359.97438 * 17 16 13 19 19 C 1.37875 * 120.00095 * 179.97438 * 17 16 13 20 20 N 1.31523 * 119.99806 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00533 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46863 * 89.99695 * 21 19 17 23 23 H 1.48497 * 109.47341 * 210.00315 * 21 19 17 24 24 H 1.48497 * 109.46766 * 330.00653 * 21 19 17 25 25 H 1.08999 * 109.47100 * 175.05851 * 1 2 3 26 26 H 1.09000 * 109.46725 * 295.05397 * 1 2 3 27 27 H 1.08990 * 109.47007 * 55.05690 * 1 2 3 28 28 H 1.09001 * 109.46940 * 239.99441 * 2 1 3 29 29 H 1.09001 * 109.47134 * 120.00131 * 2 1 3 30 30 H 0.96706 * 116.99992 * 179.97438 * 6 4 3 31 31 H 1.07997 * 119.99498 * 359.97438 * 8 7 3 32 32 H 1.07997 * 119.99511 * 180.23064 * 9 8 7 33 33 H 1.08003 * 120.00019 * 179.72323 * 10 9 8 34 34 H 1.08002 * 120.00035 * 179.97438 * 11 10 9 35 35 H 1.07994 * 120.00243 * 179.97438 * 12 11 10 36 36 H 1.09001 * 109.47108 * 305.33954 * 15 13 3 37 37 H 1.09000 * 109.46820 * 65.33950 * 15 13 3 38 38 H 1.08995 * 109.47052 * 185.33913 * 15 13 3 39 39 H 1.09005 * 109.46578 * 306.67305 * 16 13 3 40 40 H 1.08997 * 109.47365 * 66.67026 * 16 13 3 41 41 H 0.96998 * 119.99880 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5430 1.4439 0.1108 5 8 4.1444 0.3984 0.1828 6 8 4.2138 2.6065 0.1243 7 6 1.4493 2.1842 1.1712 8 6 0.5495 3.2113 0.9562 9 6 0.0039 3.8885 2.0308 10 6 0.3661 3.5455 3.3200 11 6 1.2699 2.5218 3.5348 12 6 1.8111 1.8408 2.4605 13 6 1.6240 2.1304 -1.3017 14 1 0.5386 2.2264 -1.3312 15 6 2.0945 1.2942 -2.4935 16 6 2.2609 3.5199 -1.3705 17 6 1.7235 4.2602 -2.5680 18 1 1.0003 3.7869 -3.2156 19 6 2.1551 5.5417 -2.8370 20 7 3.0361 6.1179 -2.0486 21 14 1.4895 6.4592 -4.3218 22 1 0.2735 7.2169 -3.9313 23 1 2.5206 7.4025 -4.8239 24 1 1.1451 5.4874 -5.3905 25 1 -0.3633 -1.0238 -0.0885 26 1 -0.3633 0.4352 0.9310 27 1 -0.3633 0.5886 -0.8423 28 1 1.8934 -0.5139 -0.8899 29 1 1.8934 -0.5139 0.8900 30 1 5.1768 2.5568 0.1973 31 1 0.2702 3.4825 -0.0512 32 1 -0.7019 4.6885 1.8629 33 1 -0.0568 4.0775 4.1594 34 1 1.5531 2.2541 4.5420 35 1 2.5175 1.0414 2.6283 36 1 3.1672 1.1183 -2.4131 37 1 1.5690 0.3393 -2.4974 38 1 1.8825 1.8294 -3.4191 39 1 2.0217 4.0745 -0.4630 40 1 3.3426 3.4197 -1.4605 41 1 3.3400 7.0194 -2.2381 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695786089.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:38 Heat of formation + Delta-G solvation = -78.919331 kcal Electronic energy + Delta-G solvation = -22901.019764 eV Core-core repulsion = 19745.405134 eV Total energy + Delta-G solvation = -3155.614630 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.151 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.84576 -38.70234 -36.50413 -35.63831 -33.26544 -31.45829 -30.57859 -30.41682 -27.38235 -26.58783 -24.02812 -22.51736 -22.15606 -21.78551 -20.46064 -18.39257 -17.49784 -17.13852 -16.21010 -15.68248 -15.21091 -14.76254 -14.47785 -14.23897 -14.08722 -13.80490 -13.42971 -12.90060 -12.60158 -12.35438 -12.20671 -12.04578 -11.69684 -11.56572 -11.41801 -11.04652 -10.98161 -10.89553 -10.83089 -10.71317 -10.61214 -10.32593 -10.18157 -9.83424 -9.66016 -9.16423 -8.88441 -8.53437 -8.39755 -8.14849 -5.95227 -3.96902 1.66884 1.78789 2.71279 3.31676 3.39106 3.41292 3.56927 4.15486 4.47035 4.90332 5.13129 5.16351 5.30278 5.35672 5.39579 5.49626 5.56662 5.65784 5.77795 5.85993 5.92632 6.00983 6.07075 6.15863 6.23188 6.24919 6.32772 6.41149 6.47580 6.52274 6.75370 6.78184 6.91440 6.96529 7.01769 7.06420 7.08865 7.36619 7.78257 7.92905 8.10577 8.43801 8.47258 9.10952 9.65360 11.14804 Molecular weight = 276.15amu Principal moments of inertia in cm(-1) A = 0.016167 B = 0.007268 C = 0.006326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.494600 B = 3851.489860 C = 4425.275172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.101 4.101 3 C -0.007 4.007 4 C 0.501 3.499 5 O -0.536 6.536 6 O -0.480 6.480 7 C -0.059 4.059 8 C -0.087 4.087 9 C -0.121 4.121 10 C -0.124 4.124 11 C -0.127 4.127 12 C -0.120 4.120 13 C -0.081 4.081 14 H 0.079 0.921 15 C -0.141 4.141 16 C 0.016 3.984 17 C -0.519 4.519 18 H 0.054 0.946 19 C 0.060 3.940 20 N -0.888 5.888 21 Si 0.884 3.116 22 H -0.282 1.282 23 H -0.288 1.288 24 H -0.275 1.275 25 H 0.053 0.947 26 H 0.056 0.944 27 H 0.063 0.937 28 H 0.076 0.924 29 H 0.064 0.936 30 H 0.395 0.605 31 H 0.147 0.853 32 H 0.121 0.879 33 H 0.115 0.885 34 H 0.115 0.885 35 H 0.112 0.888 36 H 0.040 0.960 37 H 0.041 0.959 38 H 0.071 0.929 39 H 0.033 0.967 40 H 0.038 0.962 41 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.050 -8.284 8.010 12.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.138 4.138 3 C -0.008 4.008 4 C 0.345 3.655 5 O -0.427 6.427 6 O -0.289 6.289 7 C -0.059 4.059 8 C -0.105 4.105 9 C -0.139 4.139 10 C -0.142 4.142 11 C -0.146 4.146 12 C -0.138 4.138 13 C -0.099 4.099 14 H 0.097 0.903 15 C -0.198 4.198 16 C -0.021 4.021 17 C -0.557 4.557 18 H 0.072 0.928 19 C -0.142 4.142 20 N -0.527 5.527 21 Si 0.712 3.288 22 H -0.208 1.208 23 H -0.214 1.214 24 H -0.200 1.200 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.082 0.918 28 H 0.095 0.905 29 H 0.083 0.917 30 H 0.252 0.748 31 H 0.165 0.835 32 H 0.139 0.861 33 H 0.133 0.867 34 H 0.133 0.867 35 H 0.130 0.870 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.090 0.910 39 H 0.051 0.949 40 H 0.056 0.944 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -4.213 -8.369 8.016 12.330 hybrid contribution 0.506 0.676 -0.729 1.116 sum -3.706 -7.693 7.286 11.225 Atomic orbital electron populations 1.21819 0.94989 1.01372 1.02612 1.21495 0.96191 0.93071 1.03079 1.19704 0.86699 0.97213 0.97215 1.23244 0.91251 0.80874 0.70174 1.90630 1.70669 1.33769 1.47625 1.85002 1.25589 1.34578 1.83722 1.19340 0.97442 0.96561 0.92572 1.21540 0.94964 0.93405 1.00572 1.21169 1.00387 0.99834 0.92539 1.21078 0.98460 0.97754 0.96948 1.20933 0.98345 0.97073 0.98204 1.20923 1.00379 1.00119 0.92407 1.21458 1.01116 0.98403 0.88964 0.90326 1.21872 0.99810 0.98306 0.99828 1.19582 0.97135 0.87919 0.97425 1.21241 1.24678 0.99049 1.10752 0.92818 1.24965 0.95211 0.97673 0.96305 1.69988 1.31012 1.14101 1.37577 0.86733 0.78638 0.79891 0.83537 1.20819 1.21401 1.20023 0.92839 0.92486 0.91796 0.90534 0.91736 0.74826 0.83547 0.86142 0.86675 0.86686 0.87032 0.94104 0.94017 0.91002 0.94911 0.94354 0.93223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.35 37.16 0.35 -1.64 16 2 C -0.10 -1.53 3.80 -26.73 -0.10 -1.63 16 3 C -0.01 -0.13 0.18 -156.82 -0.03 -0.15 16 4 C 0.50 9.36 5.05 36.00 0.18 9.54 16 5 O -0.54 -10.51 16.69 -18.75 -0.31 -10.82 16 6 O -0.48 -9.01 10.17 -39.26 -0.40 -9.41 16 7 C -0.06 -1.00 2.99 -104.63 -0.31 -1.31 16 8 C -0.09 -1.52 7.40 -39.58 -0.29 -1.82 16 9 C -0.12 -1.88 10.05 -39.58 -0.40 -2.28 16 10 C -0.12 -1.73 10.05 -39.59 -0.40 -2.13 16 11 C -0.13 -1.78 10.05 -39.58 -0.40 -2.18 16 12 C -0.12 -1.87 8.92 -39.58 -0.35 -2.22 16 13 C -0.08 -1.56 0.78 -90.61 -0.07 -1.63 16 14 H 0.08 1.47 5.36 -51.93 -0.28 1.19 16 15 C -0.14 -2.61 8.29 37.16 0.31 -2.30 16 16 C 0.02 0.38 2.66 -27.88 -0.07 0.30 16 17 C -0.52 -13.72 8.34 -34.44 -0.29 -14.01 16 18 H 0.05 1.38 7.20 -52.48 -0.38 1.00 16 19 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 20 N -0.89 -25.78 13.29 55.43 0.74 -25.04 16 21 Si 0.88 21.09 29.54 -169.99 -5.02 16.07 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.76 7.29 -51.93 -0.38 0.38 16 27 H 0.06 0.86 6.46 -51.93 -0.34 0.52 16 28 H 0.08 1.17 6.19 -51.93 -0.32 0.85 16 29 H 0.06 0.96 7.86 -51.93 -0.41 0.55 16 30 H 0.39 5.56 9.10 45.56 0.41 5.98 16 31 H 0.15 2.78 5.04 -52.49 -0.26 2.52 16 32 H 0.12 1.66 8.06 -52.49 -0.42 1.24 16 33 H 0.12 1.29 8.06 -52.48 -0.42 0.87 16 34 H 0.12 1.31 8.06 -52.49 -0.42 0.88 16 35 H 0.11 1.66 7.85 -52.49 -0.41 1.25 16 36 H 0.04 0.78 7.26 -51.93 -0.38 0.40 16 37 H 0.04 0.65 6.56 -51.93 -0.34 0.31 16 38 H 0.07 1.41 6.94 -51.93 -0.36 1.05 16 39 H 0.03 0.84 5.49 -51.93 -0.29 0.55 16 40 H 0.04 1.00 5.79 -51.93 -0.30 0.70 16 41 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 319.38 15.07 4.81 4.81 Total: -1.00 -30.83 319.38 -7.01 -37.84 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -4.85 Total: 8.45 kcal Atomic # 6 Polarization: -19.93 SS G_CDS: -1.97 Total: -21.90 kcal Atomic # 7 Polarization: -25.78 SS G_CDS: 0.74 Total: -25.04 kcal Atomic # 8 Polarization: -19.52 SS G_CDS: -0.71 Total: -20.23 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.83 -7.01 -37.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695786089.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.076 kcal (2) G-P(sol) polarization free energy of solvation -30.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds