Wall clock time and date at job start Mon Mar 30 2020 07:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47236 * 2 1 4 4 C 1.50699 * 109.46991 * 179.97438 * 3 2 1 5 5 O 1.20831 * 120.00545 * 0.02562 * 4 3 2 6 6 O 1.34231 * 120.00144 * 180.02562 * 4 3 2 7 7 C 1.50701 * 109.46785 * 60.00623 * 3 2 1 8 8 C 1.38240 * 119.99279 * 247.03522 * 7 3 2 9 9 C 1.38243 * 119.99656 * 179.76518 * 8 7 3 10 10 C 1.38239 * 119.99965 * 0.51100 * 9 8 7 11 11 C 1.38241 * 119.99650 * 359.74778 * 10 9 8 12 12 C 1.38230 * 120.00403 * 67.31211 * 7 3 2 13 13 C 1.52997 * 109.47417 * 300.00005 * 3 2 1 14 14 H 1.09008 * 109.46688 * 66.05604 * 13 3 2 15 15 C 1.53002 * 109.47291 * 186.05680 * 13 3 2 16 16 C 1.53001 * 109.47182 * 306.05928 * 13 3 2 17 17 C 1.50701 * 109.46957 * 174.99924 * 16 13 3 18 18 H 1.07996 * 120.00033 * 359.97438 * 17 16 13 19 19 C 1.37882 * 119.99636 * 179.72385 * 17 16 13 20 20 N 1.31513 * 119.99862 * 0.27643 * 19 17 16 21 21 Si 1.86795 * 119.99573 * 180.27327 * 19 17 16 22 22 H 1.48500 * 109.47322 * 90.00422 * 21 19 17 23 23 H 1.48508 * 109.46714 * 209.99971 * 21 19 17 24 24 H 1.48497 * 109.47598 * 329.99708 * 21 19 17 25 25 H 1.08993 * 109.47029 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.46744 * 299.99703 * 1 2 3 27 27 H 1.08999 * 109.46870 * 59.99713 * 1 2 3 28 28 H 1.09001 * 109.46921 * 239.99918 * 2 1 3 29 29 H 1.09003 * 109.47193 * 120.00677 * 2 1 3 30 30 H 0.96697 * 117.00123 * 180.02562 * 6 4 3 31 31 H 1.07994 * 120.00181 * 0.02562 * 8 7 3 32 32 H 1.08001 * 120.00084 * 180.23128 * 9 8 7 33 33 H 1.07997 * 120.00001 * 179.72505 * 10 9 8 34 34 H 1.08002 * 119.99616 * 179.97438 * 11 10 9 35 35 H 1.07994 * 120.00189 * 0.02562 * 12 7 3 36 36 H 1.09001 * 109.46865 * 309.03816 * 15 13 3 37 37 H 1.08991 * 109.46863 * 69.03631 * 15 13 3 38 38 H 1.08996 * 109.47054 * 189.04422 * 15 13 3 39 39 H 1.08995 * 109.46982 * 54.99594 * 16 13 3 40 40 H 1.09001 * 109.46580 * 294.99820 * 16 13 3 41 41 H 0.97001 * 119.99820 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4424 0.0006 5 8 4.1512 0.3960 0.0006 6 8 4.2183 2.6048 0.0013 7 6 1.5378 2.1528 1.2306 8 6 0.6276 3.1861 1.1089 9 6 0.1631 3.8345 2.2381 10 6 0.6169 3.4566 3.4880 11 6 1.5312 2.4269 3.6091 12 6 1.9916 1.7749 2.4804 13 6 1.5301 2.1638 -1.2492 14 1 0.4454 2.2586 -1.1966 15 6 2.1606 3.5556 -1.3276 16 6 1.9120 1.3600 -2.4938 17 6 1.3053 2.0045 -3.7136 18 1 0.7069 2.8977 -3.6112 19 6 1.5186 1.4566 -4.9608 20 7 2.2469 0.3686 -5.0853 21 14 0.7729 2.2598 -6.4735 22 1 1.7242 3.2587 -7.0233 23 1 0.4969 1.2222 -7.4994 24 1 -0.4950 2.9367 -6.1004 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 5.1839 2.5542 0.0013 31 1 0.2761 3.4839 0.1322 32 1 -0.5509 4.6393 2.1434 33 1 0.2574 3.9661 4.3697 34 1 1.8861 2.1319 4.5856 35 1 2.7064 0.9710 2.5750 36 1 2.0251 4.0700 -0.3762 37 1 3.2253 3.4607 -1.5408 38 1 1.6806 4.1278 -2.1215 39 1 1.5377 0.3409 -2.3971 40 1 2.9971 1.3406 -2.5948 41 1 2.3966 -0.0170 -5.9626 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695786092.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:42 Heat of formation + Delta-G solvation = -80.316914 kcal Electronic energy + Delta-G solvation = -22701.190677 eV Core-core repulsion = 19545.515444 eV Total energy + Delta-G solvation = -3155.675233 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.151 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.92462 -38.86723 -36.60455 -35.73200 -33.15852 -31.72183 -30.64903 -30.52845 -27.35293 -26.69061 -23.58535 -22.81938 -22.43781 -22.01472 -20.50383 -18.39157 -17.54436 -17.31474 -16.28402 -15.79834 -15.25077 -14.78585 -14.58720 -14.39448 -14.10603 -13.93799 -13.48767 -13.00295 -12.79396 -12.38148 -12.16286 -12.10891 -11.69609 -11.55644 -11.34996 -11.20104 -10.97276 -10.94819 -10.85295 -10.64798 -10.55775 -10.35186 -10.10387 -10.00447 -9.60636 -9.18092 -8.98005 -8.76584 -8.52461 -8.33652 -5.99258 -4.01509 1.44549 1.51960 2.68913 3.31568 3.38405 3.40563 3.45215 3.92765 4.45019 4.80453 4.97973 5.07824 5.19846 5.24560 5.36607 5.36868 5.58206 5.63055 5.68974 5.83036 5.93060 6.02469 6.09198 6.15708 6.17361 6.32347 6.39931 6.43102 6.54653 6.60963 6.69379 6.70838 6.82176 6.85503 6.93128 7.05429 7.11846 7.17725 7.65149 7.76276 7.98387 8.34605 8.40359 9.04214 9.62039 11.11874 Molecular weight = 276.15amu Principal moments of inertia in cm(-1) A = 0.021991 B = 0.005850 C = 0.005473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.962357 B = 4785.420940 C = 5114.755204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.101 4.101 3 C -0.005 4.005 4 C 0.502 3.498 5 O -0.519 6.519 6 O -0.504 6.504 7 C -0.055 4.055 8 C -0.104 4.104 9 C -0.122 4.122 10 C -0.127 4.127 11 C -0.121 4.121 12 C -0.118 4.118 13 C -0.078 4.078 14 H 0.079 0.921 15 C -0.145 4.145 16 C 0.024 3.976 17 C -0.515 4.515 18 H 0.057 0.943 19 C 0.058 3.942 20 N -0.893 5.893 21 Si 0.889 3.111 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.274 1.274 25 H 0.053 0.947 26 H 0.050 0.950 27 H 0.070 0.930 28 H 0.089 0.911 29 H 0.059 0.941 30 H 0.397 0.603 31 H 0.138 0.862 32 H 0.120 0.880 33 H 0.117 0.883 34 H 0.118 0.882 35 H 0.115 0.885 36 H 0.045 0.955 37 H 0.063 0.937 38 H 0.058 0.942 39 H 0.027 0.973 40 H 0.012 0.988 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.904 5.047 15.458 16.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.138 4.138 3 C -0.006 4.006 4 C 0.345 3.655 5 O -0.407 6.407 6 O -0.314 6.314 7 C -0.055 4.055 8 C -0.121 4.121 9 C -0.140 4.140 10 C -0.145 4.145 11 C -0.140 4.140 12 C -0.137 4.137 13 C -0.096 4.096 14 H 0.097 0.903 15 C -0.202 4.202 16 C -0.013 4.013 17 C -0.553 4.553 18 H 0.075 0.925 19 C -0.144 4.144 20 N -0.532 5.532 21 Si 0.717 3.283 22 H -0.208 1.208 23 H -0.213 1.213 24 H -0.199 1.199 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.089 0.911 28 H 0.108 0.892 29 H 0.078 0.922 30 H 0.254 0.746 31 H 0.156 0.844 32 H 0.138 0.862 33 H 0.135 0.865 34 H 0.136 0.864 35 H 0.133 0.867 36 H 0.064 0.936 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.045 0.955 40 H 0.030 0.970 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.105 4.652 15.326 16.154 hybrid contribution 0.432 0.294 -0.933 1.069 sum -1.673 4.946 14.393 15.311 Atomic orbital electron populations 1.21808 0.94927 1.01628 1.02370 1.21503 0.96382 0.92434 1.03491 1.19744 0.86555 0.98370 0.95976 1.23210 0.91191 0.80727 0.70390 1.90671 1.70419 1.33423 1.46150 1.84750 1.25562 1.35821 1.85312 1.19535 0.96933 0.95906 0.93098 1.21399 0.96434 0.94797 0.99487 1.21153 1.00202 1.00123 0.92528 1.21092 0.98171 0.97814 0.97400 1.21015 0.98132 0.96746 0.98060 1.21009 1.00376 0.99988 0.92279 1.21420 0.99982 0.95653 0.92575 0.90293 1.22084 1.01830 0.96021 1.00218 1.19293 0.96660 0.95230 0.90084 1.21161 1.31621 1.11148 0.91386 0.92509 1.25005 0.95337 0.94981 0.99030 1.69972 1.39061 1.20567 1.23623 0.86646 0.79577 0.79067 0.83016 1.20771 1.21312 1.19878 0.92761 0.93133 0.91115 0.89238 0.92208 0.74568 0.84434 0.86152 0.86514 0.86444 0.86660 0.93647 0.91811 0.92340 0.95489 0.96963 0.93024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 9.31 37.16 0.35 -2.00 16 2 C -0.10 -1.77 3.66 -26.73 -0.10 -1.86 16 3 C -0.01 -0.09 0.18 -156.81 -0.03 -0.12 16 4 C 0.50 9.22 5.22 36.01 0.19 9.41 16 5 O -0.52 -10.76 16.74 -18.75 -0.31 -11.07 16 6 O -0.50 -7.87 10.24 -39.26 -0.40 -8.27 16 7 C -0.05 -0.82 3.09 -104.62 -0.32 -1.14 16 8 C -0.10 -1.45 7.36 -39.58 -0.29 -1.74 16 9 C -0.12 -1.46 10.05 -39.58 -0.40 -1.86 16 10 C -0.13 -1.41 10.05 -39.58 -0.40 -1.81 16 11 C -0.12 -1.44 10.05 -39.58 -0.40 -1.83 16 12 C -0.12 -1.64 8.84 -39.59 -0.35 -1.99 16 13 C -0.08 -1.51 0.67 -90.62 -0.06 -1.57 16 14 H 0.08 1.49 5.40 -51.92 -0.28 1.21 16 15 C -0.14 -2.66 6.96 37.16 0.26 -2.40 16 16 C 0.02 0.60 3.83 -27.88 -0.11 0.49 16 17 C -0.51 -13.93 8.52 -34.44 -0.29 -14.22 16 18 H 0.06 1.48 7.08 -52.49 -0.37 1.11 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 20 N -0.89 -26.63 13.29 55.43 0.74 -25.89 16 21 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 25 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.05 0.72 7.18 -51.92 -0.37 0.35 16 27 H 0.07 1.20 6.57 -51.93 -0.34 0.86 16 28 H 0.09 1.82 6.18 -51.93 -0.32 1.50 16 29 H 0.06 0.98 7.83 -51.93 -0.41 0.57 16 30 H 0.40 4.46 9.10 45.56 0.41 4.87 16 31 H 0.14 1.96 5.06 -52.49 -0.27 1.69 16 32 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 33 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 34 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 35 H 0.12 1.59 7.81 -52.49 -0.41 1.18 16 36 H 0.04 0.73 5.51 -51.93 -0.29 0.45 16 37 H 0.06 1.23 5.96 -51.93 -0.31 0.92 16 38 H 0.06 1.11 7.24 -51.93 -0.38 0.73 16 39 H 0.03 0.71 6.03 -51.93 -0.31 0.40 16 40 H 0.01 0.33 7.56 -51.93 -0.39 -0.06 16 41 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 319.48 15.07 4.81 4.81 Total: -1.00 -31.75 319.48 -7.09 -38.84 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -4.86 Total: 6.37 kcal Atomic # 6 Polarization: -19.08 SS G_CDS: -2.05 Total: -21.13 kcal Atomic # 7 Polarization: -26.63 SS G_CDS: 0.74 Total: -25.89 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: -0.72 Total: -19.34 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.75 -7.09 -38.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695786092.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.478 kcal (2) G-P(sol) polarization free energy of solvation -31.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds