Wall clock time and date at job start Mon Mar 30 2020 07:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53000 * 109.46894 * 2 1 4 4 C 1.50700 * 109.47023 * 178.53534 * 3 2 1 5 5 O 1.20833 * 119.99534 * 359.97438 * 4 3 2 6 6 O 1.34225 * 120.00122 * 179.97438 * 4 3 2 7 7 C 1.50706 * 109.46956 * 298.52958 * 3 2 1 8 8 C 1.38229 * 120.00145 * 292.77641 * 7 3 2 9 9 C 1.38236 * 119.99864 * 179.97438 * 8 7 3 10 10 C 1.38235 * 120.00061 * 359.97438 * 9 8 7 11 11 C 1.38236 * 120.00109 * 0.07533 * 10 9 8 12 12 C 1.38234 * 119.99841 * 359.88268 * 11 10 9 13 13 C 1.52996 * 109.47374 * 58.53270 * 3 2 1 14 14 H 1.08994 * 109.47252 * 293.69023 * 13 3 2 15 15 C 1.52995 * 109.47176 * 53.69567 * 13 3 2 16 16 C 1.52998 * 109.46942 * 173.69035 * 13 3 2 17 17 C 1.50705 * 109.47294 * 172.77124 * 16 13 3 18 18 H 1.07995 * 119.99495 * 0.02562 * 17 16 13 19 19 C 1.37872 * 120.00121 * 180.02562 * 17 16 13 20 20 N 1.31508 * 120.00316 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 119.99950 * 180.02562 * 19 17 16 22 22 H 1.48489 * 109.47364 * 59.99253 * 21 19 17 23 23 H 1.48498 * 109.47092 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.46765 * 299.99427 * 21 19 17 25 25 H 1.09004 * 109.46846 * 294.02458 * 1 2 3 26 26 H 1.08999 * 109.46776 * 54.02008 * 1 2 3 27 27 H 1.08993 * 109.46866 * 174.02305 * 1 2 3 28 28 H 1.08999 * 109.46820 * 239.99935 * 2 1 3 29 29 H 1.08996 * 109.46884 * 119.99636 * 2 1 3 30 30 H 0.96700 * 117.00002 * 180.02562 * 6 4 3 31 31 H 1.07999 * 120.00245 * 359.97438 * 8 7 3 32 32 H 1.08001 * 120.00013 * 179.72468 * 9 8 7 33 33 H 1.08004 * 119.99830 * 179.97438 * 10 9 8 34 34 H 1.08002 * 120.00022 * 180.02562 * 11 10 9 35 35 H 1.07998 * 120.00296 * 180.12189 * 12 11 10 36 36 H 1.09004 * 109.46873 * 294.30908 * 15 13 3 37 37 H 1.08993 * 109.47706 * 54.30419 * 15 13 3 38 38 H 1.08995 * 109.47342 * 174.31361 * 15 13 3 39 39 H 1.08999 * 109.47462 * 292.76959 * 16 13 3 40 40 H 1.08999 * 109.47266 * 52.77693 * 16 13 3 41 41 H 0.97005 * 120.00851 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5466 1.4427 0.0363 5 8 4.1504 0.3963 0.0603 6 8 4.2177 2.6052 0.0421 7 6 1.5676 2.1423 -1.2483 8 6 2.0500 1.7527 -2.4837 9 6 1.6163 2.3942 -3.6288 10 6 0.6997 3.4251 -3.5385 11 6 0.2180 3.8154 -2.3029 12 6 0.6511 3.1733 -1.1579 13 6 1.5001 2.1744 1.2303 14 1 0.4177 2.2726 1.1487 15 6 1.8464 1.3783 2.4901 16 6 2.1334 3.5645 1.3155 17 6 1.4740 4.3502 2.4196 18 1 0.6827 3.9026 3.0025 19 6 1.8809 5.6404 2.6854 20 7 2.8449 6.1853 1.9760 21 14 1.0640 6.6140 4.0545 22 1 1.2515 5.9053 5.3458 23 1 1.6778 7.9638 4.1363 24 1 -0.3872 6.7473 3.7692 25 1 -0.3633 0.4184 0.9387 26 1 -0.3633 0.6038 -0.8316 27 1 -0.3633 -1.0220 -0.1070 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 5.1831 2.5546 0.0654 31 1 2.7658 0.9470 -2.5544 32 1 1.9965 2.0928 -4.5937 33 1 0.3611 3.9266 -4.4331 34 1 -0.4984 4.6205 -2.2324 35 1 0.2734 3.4768 -0.1928 36 1 1.3139 0.4272 2.4767 37 1 2.9201 1.1930 2.5192 38 1 1.5518 1.9471 3.3719 39 1 3.1985 3.4664 1.5255 40 1 1.9964 4.0849 0.3675 41 1 3.1315 7.0929 2.1632 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695786095.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:46 Heat of formation + Delta-G solvation = -79.926962 kcal Electronic energy + Delta-G solvation = -22900.074554 eV Core-core repulsion = 19744.416230 eV Total energy + Delta-G solvation = -3155.658324 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.151 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.84452 -38.70120 -36.52389 -35.63451 -33.24979 -31.42525 -30.62682 -30.41578 -27.35752 -26.60526 -24.01746 -22.50578 -22.16338 -21.78484 -20.46365 -18.37804 -17.49696 -17.15132 -16.20339 -15.67951 -15.20989 -14.77213 -14.46722 -14.24543 -14.10507 -13.80270 -13.43398 -12.91197 -12.59832 -12.27594 -12.20905 -12.03425 -11.69992 -11.57354 -11.42102 -11.00988 -10.97390 -10.88160 -10.83600 -10.75460 -10.59746 -10.34004 -10.21816 -9.84248 -9.66105 -9.16114 -8.89502 -8.53434 -8.39836 -8.15205 -5.94844 -3.96705 1.66532 1.78494 2.71382 3.33173 3.38642 3.40352 3.57059 4.15125 4.47192 4.90384 5.13049 5.16863 5.30296 5.35560 5.39844 5.49614 5.56837 5.65689 5.77772 5.86351 5.92440 5.99999 6.07044 6.16538 6.23563 6.25261 6.35019 6.40170 6.46233 6.52154 6.75213 6.77901 6.91344 6.96351 7.01859 7.06287 7.09111 7.36409 7.78250 7.92997 8.10673 8.43958 8.47355 9.10948 9.65547 11.15142 Molecular weight = 276.15amu Principal moments of inertia in cm(-1) A = 0.016062 B = 0.007286 C = 0.006341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.879129 B = 3841.852175 C = 4414.597459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.099 4.099 3 C -0.007 4.007 4 C 0.501 3.499 5 O -0.536 6.536 6 O -0.481 6.481 7 C -0.060 4.060 8 C -0.120 4.120 9 C -0.127 4.127 10 C -0.124 4.124 11 C -0.121 4.121 12 C -0.087 4.087 13 C -0.081 4.081 14 H 0.079 0.921 15 C -0.141 4.141 16 C 0.017 3.983 17 C -0.520 4.520 18 H 0.053 0.947 19 C 0.060 3.940 20 N -0.888 5.888 21 Si 0.884 3.116 22 H -0.279 1.279 23 H -0.289 1.289 24 H -0.278 1.278 25 H 0.062 0.938 26 H 0.058 0.942 27 H 0.052 0.948 28 H 0.063 0.937 29 H 0.075 0.925 30 H 0.395 0.605 31 H 0.112 0.888 32 H 0.115 0.885 33 H 0.115 0.885 34 H 0.121 0.879 35 H 0.147 0.853 36 H 0.041 0.959 37 H 0.040 0.960 38 H 0.071 0.929 39 H 0.037 0.963 40 H 0.033 0.967 41 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.277 -8.547 -8.050 12.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.137 4.137 3 C -0.008 4.008 4 C 0.345 3.655 5 O -0.427 6.427 6 O -0.289 6.289 7 C -0.060 4.060 8 C -0.138 4.138 9 C -0.146 4.146 10 C -0.142 4.142 11 C -0.139 4.139 12 C -0.105 4.105 13 C -0.099 4.099 14 H 0.097 0.903 15 C -0.198 4.198 16 C -0.020 4.020 17 C -0.558 4.558 18 H 0.071 0.929 19 C -0.141 4.141 20 N -0.527 5.527 21 Si 0.712 3.288 22 H -0.204 1.204 23 H -0.214 1.214 24 H -0.204 1.204 25 H 0.081 0.919 26 H 0.077 0.923 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.094 0.906 30 H 0.252 0.748 31 H 0.130 0.870 32 H 0.133 0.867 33 H 0.133 0.867 34 H 0.139 0.861 35 H 0.165 0.835 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.090 0.910 39 H 0.055 0.945 40 H 0.051 0.949 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -3.439 -8.626 -8.074 12.305 hybrid contribution 0.430 0.692 0.759 1.113 sum -3.009 -7.934 -7.315 11.203 Atomic orbital electron populations 1.21830 0.94979 1.01318 1.02740 1.21468 0.96215 0.93036 1.02958 1.19712 0.87056 0.97408 0.96650 1.23244 0.91316 0.80861 0.70109 1.90632 1.70699 1.33715 1.47662 1.84994 1.25296 1.34525 1.84088 1.19350 0.97441 0.96644 0.92566 1.20924 1.00334 1.00150 0.92398 1.20935 0.98616 0.97237 0.97766 1.21082 0.98044 0.97556 0.97543 1.21171 1.00457 0.99843 0.92454 1.21543 0.95611 0.93532 0.99793 1.21454 1.00703 0.98123 0.89643 0.90293 1.21867 1.00124 0.98557 0.99266 1.19560 0.96886 0.87848 0.97664 1.21202 1.19282 0.98181 1.17148 0.92877 1.24957 0.95154 0.97780 0.96212 1.69970 1.28277 1.14595 1.39839 0.86796 0.79699 0.79347 0.82940 1.20427 1.21448 1.20369 0.91851 0.92289 0.92871 0.91847 0.90593 0.74811 0.87013 0.86672 0.86663 0.86128 0.83541 0.94016 0.94125 0.91031 0.94480 0.94919 0.93157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.15 37.16 0.34 -1.66 16 2 C -0.10 -1.50 3.64 -26.73 -0.10 -1.60 16 3 C -0.01 -0.12 0.18 -156.81 -0.03 -0.15 16 4 C 0.50 9.37 5.05 36.01 0.18 9.55 16 5 O -0.54 -10.52 16.73 -18.76 -0.31 -10.83 16 6 O -0.48 -9.02 10.19 -39.24 -0.40 -9.42 16 7 C -0.06 -1.02 3.14 -104.62 -0.33 -1.35 16 8 C -0.12 -1.87 8.81 -39.59 -0.35 -2.22 16 9 C -0.13 -1.78 10.05 -39.58 -0.40 -2.18 16 10 C -0.12 -1.73 10.05 -39.58 -0.40 -2.13 16 11 C -0.12 -1.88 10.05 -39.58 -0.40 -2.28 16 12 C -0.09 -1.52 7.20 -39.58 -0.28 -1.81 16 13 C -0.08 -1.56 0.62 -90.63 -0.06 -1.61 16 14 H 0.08 1.48 5.49 -51.93 -0.29 1.19 16 15 C -0.14 -2.60 8.24 37.15 0.31 -2.30 16 16 C 0.02 0.40 2.63 -27.88 -0.07 0.33 16 17 C -0.52 -13.76 8.34 -34.44 -0.29 -14.04 16 18 H 0.05 1.36 7.24 -52.49 -0.38 0.98 16 19 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 20 N -0.89 -25.79 13.29 55.43 0.74 -25.05 16 21 Si 0.88 21.10 29.54 -169.99 -5.02 16.07 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 H 0.06 0.84 6.43 -51.93 -0.33 0.51 16 26 H 0.06 0.79 6.89 -51.93 -0.36 0.44 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.94 7.80 -51.93 -0.40 0.53 16 29 H 0.08 1.17 6.47 -51.93 -0.34 0.83 16 30 H 0.39 5.57 9.10 45.56 0.41 5.99 16 31 H 0.11 1.66 7.80 -52.49 -0.41 1.26 16 32 H 0.12 1.31 8.06 -52.49 -0.42 0.88 16 33 H 0.12 1.29 8.06 -52.48 -0.42 0.87 16 34 H 0.12 1.67 8.06 -52.49 -0.42 1.24 16 35 H 0.15 2.79 5.06 -52.49 -0.27 2.52 16 36 H 0.04 0.65 6.24 -51.93 -0.32 0.33 16 37 H 0.04 0.77 7.26 -51.93 -0.38 0.40 16 38 H 0.07 1.40 6.97 -51.93 -0.36 1.04 16 39 H 0.04 0.97 5.84 -51.93 -0.30 0.67 16 40 H 0.03 0.84 5.53 -51.93 -0.29 0.55 16 41 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 318.42 15.07 4.80 4.80 Total: -1.00 -30.83 318.42 -7.00 -37.84 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -4.84 Total: 8.47 kcal Atomic # 6 Polarization: -19.90 SS G_CDS: -1.97 Total: -21.87 kcal Atomic # 7 Polarization: -25.79 SS G_CDS: 0.74 Total: -25.05 kcal Atomic # 8 Polarization: -19.54 SS G_CDS: -0.71 Total: -20.25 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.83 -7.00 -37.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695786095.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.090 kcal (2) G-P(sol) polarization free energy of solvation -30.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds