Wall clock time and date at job start Mon Mar 30 2020 07:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47466 * 2 1 4 4 C 1.52998 * 109.47026 * 239.99713 * 2 1 3 5 5 C 1.53004 * 109.47054 * 120.00322 * 2 1 3 6 6 H 1.09001 * 109.46739 * 299.99499 * 5 2 1 7 7 N 1.46897 * 109.47072 * 179.97438 * 5 2 1 8 8 C 1.50694 * 109.47249 * 59.99662 * 5 2 1 9 9 O 1.21283 * 119.99888 * 100.00309 * 8 5 2 10 10 N 1.34776 * 120.00449 * 280.00338 * 8 5 2 11 11 C 1.39234 * 120.00577 * 175.70070 * 10 8 5 12 12 C 1.39482 * 119.83559 * 215.03750 * 11 10 8 13 13 C 1.36372 * 120.16569 * 179.75946 * 12 11 10 14 14 C 1.40866 * 119.83107 * 0.51533 * 13 12 11 15 15 C 1.41155 * 120.16255 * 179.72175 * 14 13 12 16 16 H 1.08004 * 119.99899 * 214.77748 * 15 14 13 17 17 C 1.39906 * 120.00434 * 34.78109 * 15 14 13 18 18 N 1.30872 * 119.99572 * 355.61169 * 17 15 14 19 19 Si 1.86795 * 119.99962 * 175.61504 * 17 15 14 20 20 H 1.48501 * 109.47448 * 59.99989 * 19 17 15 21 21 H 1.48508 * 109.47073 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47254 * 299.99583 * 19 17 15 23 23 C 1.40865 * 119.67395 * 359.73766 * 14 13 12 24 24 C 1.36381 * 119.82681 * 0.02562 * 23 14 13 25 25 H 1.08998 * 109.47179 * 299.99838 * 1 2 3 26 26 H 1.08997 * 109.47333 * 60.00106 * 1 2 3 27 27 H 1.08999 * 109.47063 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47315 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.47249 * 300.00243 * 3 2 1 30 30 H 1.08998 * 109.46789 * 59.99923 * 3 2 1 31 31 H 1.08999 * 109.47761 * 300.00571 * 4 2 1 32 32 H 1.09001 * 109.47129 * 60.00658 * 4 2 1 33 33 H 1.09007 * 109.47399 * 180.02562 * 4 2 1 34 34 H 1.00897 * 110.99993 * 299.99770 * 7 5 2 35 35 H 1.00900 * 111.00156 * 63.95328 * 7 5 2 36 36 H 0.97004 * 119.99374 * 355.69647 * 10 8 5 37 37 H 1.08001 * 119.91303 * 0.02562 * 12 11 10 38 38 H 1.08009 * 120.08110 * 180.25437 * 13 12 11 39 39 H 0.97007 * 119.99427 * 179.97438 * 18 17 15 40 40 H 1.08003 * 120.08947 * 179.97438 * 23 14 13 41 41 H 1.08001 * 119.91341 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 2.0400 -0.7213 1.2492 6 1 1.6767 -0.2075 2.1392 7 7 3.5089 -0.7219 1.2489 8 6 1.5376 -2.1421 1.2492 9 8 2.2660 -3.0428 0.8900 10 7 0.2789 -2.4119 1.6484 11 6 -0.2150 -3.7109 1.5640 12 6 -1.5580 -3.9240 1.2534 13 6 -2.0477 -5.1936 1.1642 14 6 -1.1960 -6.2911 1.3974 15 6 -1.6969 -7.6081 1.3127 16 1 -1.3169 -8.3738 1.9728 17 6 -2.6854 -7.9216 0.3736 18 7 -3.2071 -6.9773 -0.3672 19 14 -3.2606 -9.6879 0.1773 20 1 -3.8220 -10.1717 1.4642 21 1 -4.3069 -9.7538 -0.8745 22 1 -2.1107 -10.5425 -0.2135 23 6 0.1579 -6.0679 1.7158 24 6 0.6344 -4.7926 1.7966 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9562 0.8900 31 1 1.6766 -1.7489 -1.2493 32 1 1.6767 -0.2074 -2.1392 33 1 3.1300 -0.7217 -1.2490 34 1 3.8702 -1.1931 0.4332 35 1 3.8709 0.2177 1.3137 36 1 -0.2830 -1.7009 1.9945 37 1 -2.2106 -3.0813 1.0789 38 1 -3.0869 -5.3571 0.9196 39 1 -3.8922 -7.1948 -1.0186 40 1 0.8168 -6.9044 1.8962 41 1 1.6721 -4.6198 2.0411 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040463511.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:38:17 Heat of formation + Delta-G solvation = -23.966154 kcal Electronic energy + Delta-G solvation = -21653.601128 eV Core-core repulsion = 18532.662198 eV Total energy + Delta-G solvation = -3120.938930 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.31350 -37.96697 -36.68447 -34.46472 -32.90015 -32.29724 -29.58248 -29.10444 -27.56811 -27.40052 -26.03293 -24.39795 -21.61351 -20.90394 -19.89688 -18.85726 -17.38096 -17.00702 -16.46419 -15.79155 -15.19465 -14.83717 -14.57164 -14.43213 -14.02248 -13.70699 -13.48170 -12.84158 -12.65586 -12.44329 -12.33546 -12.11717 -12.07893 -11.80001 -11.67691 -11.44853 -11.31158 -11.09679 -10.97415 -10.95111 -10.90890 -10.67781 -9.98398 -9.46575 -9.36511 -9.10384 -8.84553 -8.60639 -7.51834 -6.82605 -6.59637 -4.31954 2.59703 3.06420 3.09904 3.12065 3.13559 3.36759 3.68301 3.99792 4.53231 4.55913 4.62934 4.73549 4.83563 5.16757 5.19500 5.34425 5.41373 5.54650 5.63702 5.67950 5.69941 5.82920 5.85378 6.00013 6.18487 6.22418 6.25295 6.49114 6.79429 6.90535 7.02192 7.10236 7.24671 7.32924 7.39700 7.66777 7.78757 7.91733 8.09144 8.30515 8.34979 8.65237 8.81757 8.95203 9.03594 10.31436 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.035040 B = 0.003955 C = 0.003792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.886224 B = 7078.437885 C = 7382.454281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.096 4.096 3 C -0.141 4.141 4 C -0.147 4.147 5 C 0.085 3.915 6 H 0.096 0.904 7 N -0.827 5.827 8 C 0.511 3.489 9 O -0.521 6.521 10 N -0.652 5.652 11 C 0.006 3.994 12 C -0.122 4.122 13 C -0.141 4.141 14 C 0.100 3.900 15 C -0.462 4.462 16 H 0.075 0.925 17 C 0.070 3.930 18 N -0.813 5.813 19 Si 0.915 3.085 20 H -0.266 1.266 21 H -0.280 1.280 22 H -0.266 1.266 23 C -0.205 4.205 24 C -0.086 4.086 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.072 0.928 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.057 0.943 33 H 0.054 0.946 34 H 0.352 0.648 35 H 0.342 0.658 36 H 0.394 0.606 37 H 0.090 0.910 38 H 0.131 0.869 39 H 0.277 0.723 40 H 0.095 0.905 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.700 14.792 0.089 15.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.099 4.099 3 C -0.199 4.199 4 C -0.205 4.205 5 C -0.030 4.030 6 H 0.114 0.886 7 N -0.359 5.359 8 C 0.297 3.703 9 O -0.396 6.396 10 N -0.296 5.296 11 C -0.086 4.086 12 C -0.142 4.142 13 C -0.161 4.161 14 C 0.097 3.903 15 C -0.493 4.493 16 H 0.093 0.907 17 C -0.145 4.145 18 N -0.441 5.441 19 Si 0.740 3.260 20 H -0.191 1.191 21 H -0.205 1.205 22 H -0.191 1.191 23 C -0.225 4.225 24 C -0.106 4.106 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.091 0.909 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.168 0.832 35 H 0.156 0.844 36 H 0.228 0.772 37 H 0.108 0.892 38 H 0.149 0.851 39 H 0.088 0.912 40 H 0.113 0.887 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 5.025 13.752 0.306 14.644 hybrid contribution -0.697 0.215 -1.011 1.247 sum 4.328 13.966 -0.705 14.638 Atomic orbital electron populations 1.22082 0.93740 1.03546 1.01979 1.21223 0.97030 0.95702 0.95942 1.21887 1.00724 0.94978 1.02267 1.21922 1.00757 1.01372 0.96425 1.21429 0.89976 0.93667 0.97968 0.88619 1.58586 1.04933 1.22604 1.49827 1.20255 0.82144 0.90239 0.77703 1.90666 1.55288 1.46954 1.46710 1.43130 1.13972 1.09703 1.62806 1.17272 0.93971 0.82455 1.14932 1.20305 0.93252 0.97257 1.03409 1.21179 1.00824 0.90348 1.03771 1.17708 0.90166 0.93545 0.88857 1.19468 1.17779 0.95408 1.16673 0.90692 1.25862 0.94526 0.99352 0.94724 1.69758 1.22271 1.33708 1.18316 0.86258 0.78791 0.82276 0.78653 1.19074 1.20460 1.19114 1.20817 0.95451 0.94959 1.11304 1.20424 0.98323 0.91970 0.99854 0.92391 0.92271 0.90900 0.92750 0.92111 0.92303 0.91495 0.92389 0.92739 0.83226 0.84424 0.77207 0.89194 0.85095 0.91158 0.88666 0.87405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.65 7.56 37.16 0.28 -1.37 16 2 C -0.10 -1.01 0.62 -154.51 -0.10 -1.11 16 3 C -0.14 -1.11 8.14 37.15 0.30 -0.81 16 4 C -0.15 -1.77 7.88 37.16 0.29 -1.47 16 5 C 0.09 1.05 2.57 -68.87 -0.18 0.87 16 6 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 7 N -0.83 -9.84 8.81 -5.66 -0.05 -9.89 16 8 C 0.51 8.82 5.24 -10.99 -0.06 8.76 16 9 O -0.52 -11.16 13.37 5.55 0.07 -11.08 16 10 N -0.65 -11.34 3.86 -9.74 -0.04 -11.38 16 11 C 0.01 0.13 6.30 -83.57 -0.53 -0.40 16 12 C -0.12 -2.77 9.90 -39.79 -0.39 -3.16 16 13 C -0.14 -3.64 8.61 -39.26 -0.34 -3.98 16 14 C 0.10 2.70 5.55 -106.80 -0.59 2.10 16 15 C -0.46 -12.46 9.02 -37.85 -0.34 -12.80 16 16 H 0.07 1.94 7.85 -52.48 -0.41 1.53 16 17 C 0.07 1.79 5.42 -17.34 -0.09 1.69 16 18 N -0.81 -21.26 10.60 55.55 0.59 -20.67 16 19 Si 0.92 19.16 29.56 -169.99 -5.03 14.14 16 20 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 21 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 22 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 23 C -0.21 -5.28 9.74 -39.26 -0.38 -5.66 16 24 C -0.09 -2.09 8.61 -39.79 -0.34 -2.43 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.07 0.96 5.99 -51.93 -0.31 0.65 16 28 H 0.05 0.38 6.76 -51.93 -0.35 0.03 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 1.04 7.00 -51.93 -0.36 0.68 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.05 0.60 6.66 -51.93 -0.35 0.25 16 34 H 0.35 4.46 6.75 -39.29 -0.27 4.20 16 35 H 0.34 3.04 7.39 -39.29 -0.29 2.75 16 36 H 0.39 5.48 7.92 -40.82 -0.32 5.16 16 37 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 38 H 0.13 3.48 6.13 -52.48 -0.32 3.16 16 39 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16 40 H 0.10 2.34 8.06 -52.48 -0.42 1.91 16 41 H 0.11 2.63 6.22 -52.49 -0.33 2.30 16 LS Contribution 324.66 15.07 4.89 4.89 Total: -1.00 -30.03 324.66 -7.85 -37.89 By element: Atomic # 1 Polarization: 21.67 SS G_CDS: -5.83 Total: 15.84 kcal Atomic # 6 Polarization: -17.28 SS G_CDS: -2.47 Total: -19.74 kcal Atomic # 7 Polarization: -42.43 SS G_CDS: 0.50 Total: -41.93 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: 0.07 Total: -11.08 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -5.03 Total: 14.14 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.03 -7.85 -37.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040463511.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.920 kcal (2) G-P(sol) polarization free energy of solvation -30.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds